Wall clock time and date at job start Tue Mar 31 2020 19:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47153 * 2 1 4 4 H 1.09000 * 115.54752 * 29.33710 * 3 2 1 5 5 C 1.53073 * 117.51445 * 243.61014 * 3 2 1 6 6 C 1.52998 * 59.98682 * 252.52548 * 5 3 2 7 7 H 1.08994 * 117.49890 * 107.50178 * 6 5 3 8 8 C 1.50707 * 117.49646 * 252.50357 * 6 5 3 9 9 O 1.21276 * 120.00310 * 68.74448 * 8 6 5 10 10 N 1.34774 * 119.99616 * 248.74243 * 8 6 5 11 11 C 1.46500 * 119.99950 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47226 * 184.98387 * 11 10 8 13 13 H 1.08999 * 109.45169 * 185.73683 * 12 11 10 14 14 C 1.53031 * 109.46044 * 65.76323 * 12 11 10 15 15 C 1.53115 * 109.28124 * 180.80231 * 14 12 11 16 16 C 1.53126 * 109.15981 * 57.65546 * 15 14 12 17 17 C 1.53041 * 109.27616 * 302.35033 * 16 15 14 18 18 N 1.46847 * 109.52693 * 59.17573 * 17 16 15 19 19 C 1.46895 * 111.00133 * 174.16269 * 18 17 16 20 20 C 1.50695 * 109.47228 * 63.76245 * 19 18 17 21 21 O 1.21289 * 119.99991 * 0.02562 * 20 19 18 22 22 N 1.34781 * 120.00039 * 180.02562 * 20 19 18 23 23 C 1.37092 * 120.00236 * 180.02562 * 22 20 19 24 24 H 1.08002 * 120.00243 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00145 * 180.02562 * 23 22 20 26 26 N 1.31412 * 120.00026 * 180.02562 * 25 23 22 27 27 Si 1.86794 * 120.00111 * 359.97438 * 25 23 22 28 28 H 1.48508 * 109.47082 * 270.00243 * 27 25 23 29 29 H 1.48504 * 109.47008 * 29.99794 * 27 25 23 30 30 H 1.48497 * 109.47186 * 150.00186 * 27 25 23 31 31 H 1.09007 * 109.47057 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46739 * 299.99579 * 1 2 3 33 33 H 1.08987 * 109.47416 * 59.99691 * 1 2 3 34 34 H 1.09005 * 109.47124 * 240.00135 * 2 1 3 35 35 H 1.09000 * 109.47668 * 120.00145 * 2 1 3 36 36 H 1.08997 * 117.51132 * 145.04516 * 5 3 2 37 37 H 1.09001 * 117.49396 * 0.02562 * 5 3 2 38 38 H 0.96998 * 120.00210 * 0.02562 * 10 8 6 39 39 H 1.08998 * 109.46884 * 64.98837 * 11 10 8 40 40 H 1.09002 * 109.47366 * 304.98851 * 11 10 8 41 41 H 1.09010 * 109.50320 * 60.86553 * 14 12 11 42 42 H 1.08999 * 109.53720 * 300.76975 * 14 12 11 43 43 H 1.09004 * 109.52476 * 297.75816 * 15 14 12 44 44 H 1.09003 * 109.58163 * 177.59185 * 15 14 12 45 45 H 1.09000 * 109.50380 * 182.40852 * 16 15 14 46 46 H 1.09000 * 109.50283 * 62.28666 * 16 15 14 47 47 H 1.09005 * 109.46221 * 299.16070 * 17 16 15 48 48 H 1.09003 * 109.46007 * 179.19373 * 17 16 15 49 49 H 1.09007 * 109.46742 * 303.76368 * 19 18 17 50 50 H 1.09000 * 109.47011 * 183.77042 * 19 18 17 51 51 H 0.97004 * 119.99796 * 359.97438 * 22 20 19 52 52 H 0.97001 * 120.00207 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4818 5 6 2.8446 1.9081 -1.2161 6 6 3.5502 1.6578 0.1182 7 1 4.1803 0.7719 0.1959 8 6 4.0229 2.8617 0.8918 9 8 3.2159 3.6152 1.3936 10 7 5.3424 3.1008 1.0260 11 6 5.8020 4.2714 1.7776 12 6 7.3247 4.3786 1.6737 13 1 7.6762 5.1874 2.3143 14 6 7.7176 4.6692 0.2236 15 6 9.2428 4.7558 0.1206 16 6 9.8555 3.4440 0.6194 17 6 9.4005 3.1889 2.0582 18 7 7.9347 3.1138 2.1034 19 6 7.4681 2.7327 3.4432 20 6 7.8509 3.8037 4.4318 21 8 8.4526 4.7878 4.0571 22 7 7.5245 3.6679 5.7325 23 6 7.8722 4.6425 6.6318 24 1 8.4080 5.5188 6.2982 25 6 7.5362 4.5022 7.9728 26 7 7.8691 5.4366 8.8347 27 14 6.6100 2.9862 8.5500 28 1 5.1487 3.2372 8.4665 29 1 6.9640 1.8312 7.6862 30 1 6.9810 2.6850 9.9560 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8898 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.7224 2.9433 -1.5344 37 1 3.0101 1.1866 -2.0162 38 1 5.9878 2.4983 0.6244 39 1 5.5157 4.1665 2.8241 40 1 5.3454 5.1708 1.3644 41 1 7.2775 5.6159 -0.0900 42 1 7.3542 3.8681 -0.4201 43 1 9.6030 5.5821 0.7335 44 1 9.5301 4.9202 -0.9180 45 1 10.9427 3.5153 0.5887 46 1 9.5259 2.6231 -0.0175 47 1 9.7423 4.0033 2.6970 48 1 9.8235 2.2484 2.4114 49 1 7.9293 1.7886 3.7335 50 1 6.3841 2.6192 3.4318 51 1 7.0429 2.8810 6.0321 52 1 7.6348 5.3386 9.7709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266856528.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:41 Heat of formation + Delta-G solvation = -76.788189 kcal Electronic energy + Delta-G solvation = -30528.931558 eV Core-core repulsion = 26527.669655 eV Total energy + Delta-G solvation = -4001.261904 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.61567 -40.76650 -39.17347 -37.95021 -36.09590 -35.74194 -34.31549 -33.78032 -32.95387 -32.04941 -29.16092 -27.81598 -26.29181 -25.06160 -24.43628 -23.95750 -22.42011 -21.57093 -21.35584 -21.03009 -20.68347 -19.91349 -18.31271 -17.75164 -17.29419 -16.91234 -16.78284 -16.39540 -15.98624 -15.74362 -15.48181 -15.39218 -15.29212 -15.13128 -14.96800 -14.71927 -14.51342 -14.35020 -13.79901 -13.55493 -13.46176 -13.34116 -13.16201 -13.07863 -12.94075 -12.84243 -12.61501 -12.47216 -12.15517 -12.05647 -12.01103 -11.88568 -11.58011 -11.42944 -11.30113 -11.19494 -11.18333 -11.04738 -10.98158 -10.72009 -10.26042 -10.03366 -9.08684 -8.47089 -6.06911 1.24430 1.30068 1.38339 1.54658 1.85823 2.17188 2.20502 2.86975 2.92225 2.94140 3.10045 3.69206 3.74488 3.82249 3.83333 3.94279 4.00547 4.15395 4.23087 4.25709 4.31882 4.33982 4.43814 4.51173 4.52865 4.56319 4.61362 4.66021 4.75805 4.83002 4.84370 4.92951 4.98852 5.02589 5.06213 5.13549 5.17035 5.19111 5.27026 5.28574 5.29598 5.33445 5.45832 5.47750 5.54075 5.56877 5.87409 5.98499 6.06439 6.52044 6.68108 6.82954 7.33532 7.33933 7.88803 8.70394 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008572 B = 0.003531 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.551038 B = 7927.835640 C =10418.439671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.129 4.129 4 H 0.087 0.913 5 C -0.132 4.132 6 C -0.189 4.189 7 H 0.152 0.848 8 C 0.531 3.469 9 O -0.597 6.597 10 N -0.693 5.693 11 C 0.135 3.865 12 C 0.058 3.942 13 H 0.055 0.945 14 C -0.099 4.099 15 C -0.120 4.120 16 C -0.103 4.103 17 C 0.037 3.963 18 N -0.483 5.483 19 C 0.042 3.958 20 C 0.418 3.582 21 O -0.608 6.608 22 N -0.590 5.590 23 C -0.325 4.325 24 H 0.056 0.944 25 C -0.014 4.014 26 N -0.932 5.932 27 Si 0.959 3.041 28 H -0.263 1.263 29 H -0.230 1.230 30 H -0.272 1.272 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.134 0.866 38 H 0.421 0.579 39 H 0.037 0.963 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.035 0.965 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.027 0.973 48 H 0.079 0.921 49 H 0.122 0.878 50 H 0.106 0.894 51 H 0.387 0.613 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.036 -16.658 -23.561 29.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 C -0.147 4.147 4 H 0.105 0.895 5 C -0.169 4.169 6 C -0.210 4.210 7 H 0.169 0.831 8 C 0.319 3.681 9 O -0.479 6.479 10 N -0.345 5.345 11 C 0.010 3.990 12 C -0.050 4.050 13 H 0.073 0.927 14 C -0.136 4.136 15 C -0.157 4.157 16 C -0.141 4.141 17 C -0.091 4.091 18 N -0.206 5.206 19 C -0.090 4.090 20 C 0.206 3.794 21 O -0.494 6.494 22 N -0.231 5.231 23 C -0.455 4.455 24 H 0.074 0.926 25 C -0.213 4.213 26 N -0.573 5.573 27 Si 0.780 3.220 28 H -0.187 1.187 29 H -0.154 1.154 30 H -0.197 1.197 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.152 0.848 38 H 0.260 0.740 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.054 0.946 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.045 0.955 48 H 0.098 0.902 49 H 0.140 0.860 50 H 0.124 0.876 51 H 0.222 0.778 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.295 -15.748 -23.592 29.288 hybrid contribution 0.253 0.796 2.081 2.242 sum -7.042 -14.951 -21.511 27.127 Atomic orbital electron populations 1.21752 0.95289 1.02184 1.01636 1.21146 0.96186 0.92219 1.03064 1.22479 0.91012 0.99370 1.01881 0.89522 1.23193 1.00241 1.03224 0.90258 1.22330 0.98076 0.98174 1.02395 0.83059 1.20387 0.82117 0.86063 0.79486 1.90687 1.55365 1.50863 1.50973 1.45694 1.06736 1.27757 1.54297 1.21169 0.93630 0.89031 0.95134 1.22090 0.91700 0.92870 0.98383 0.92687 1.21539 0.96339 1.02108 0.93651 1.21563 0.95079 0.97530 1.01549 1.21516 1.00062 0.98011 0.94505 1.22320 0.87065 1.01228 0.98449 1.62535 1.07899 1.29893 1.20298 1.22305 1.02999 0.96798 0.86892 1.22259 0.83252 0.90272 0.83613 1.90464 1.45867 1.34654 1.78390 1.42286 1.52518 1.20521 1.07744 1.18991 1.36009 1.01192 0.89296 0.92558 1.26087 0.98318 1.01754 0.95105 1.69797 1.47399 1.35997 1.04107 0.85436 0.78897 0.78445 0.79247 1.18748 1.15363 1.19690 0.91445 0.93818 0.92376 0.89622 0.91445 0.89583 0.84768 0.74029 0.94470 0.92122 0.91780 0.89370 0.94646 0.89679 0.91056 0.89331 0.95469 0.90229 0.85971 0.87645 0.77788 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.87 71.98 0.71 -1.10 16 2 C -0.09 -1.06 6.22 30.59 0.19 -0.87 16 3 C -0.13 -2.17 5.25 -10.77 -0.06 -2.23 16 4 H 0.09 2.02 7.60 -2.39 -0.02 2.00 16 5 C -0.13 -1.76 9.88 30.62 0.30 -1.45 16 6 C -0.19 -3.13 5.91 -11.54 -0.07 -3.20 16 7 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 8 C 0.53 13.56 7.61 87.66 0.67 14.23 16 9 O -0.60 -21.42 16.25 -3.02 -0.05 -21.47 16 10 N -0.69 -15.64 4.98 -463.05 -2.30 -17.94 16 11 C 0.14 4.01 4.55 86.38 0.39 4.40 16 12 C 0.06 1.71 1.66 44.94 0.07 1.78 16 13 H 0.06 2.21 5.54 -2.39 -0.01 2.19 16 14 C -0.10 -2.19 5.26 30.64 0.16 -2.02 16 15 C -0.12 -2.59 6.00 30.67 0.18 -2.41 16 16 C -0.10 -2.11 6.09 30.65 0.19 -1.93 16 17 C 0.04 1.02 5.06 86.33 0.44 1.46 16 18 N -0.48 -12.83 4.03 -875.65 -3.53 -16.36 16 19 C 0.04 1.26 5.33 85.56 0.46 1.72 16 20 C 0.42 18.30 7.14 87.65 0.63 18.92 16 21 O -0.61 -31.46 11.19 -3.06 -0.03 -31.49 16 22 N -0.59 -27.96 5.09 -306.99 -1.56 -29.53 16 23 C -0.33 -19.14 10.16 84.04 0.85 -18.28 16 24 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 25 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 26 N -0.93 -56.90 13.96 21.66 0.30 -56.60 16 27 Si 0.96 39.88 27.74 68.60 1.90 41.78 16 28 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 29 H -0.23 -8.06 6.52 99.48 0.65 -7.41 16 30 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 31 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 0.68 7.88 -2.38 -0.02 0.66 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.13 0.97 8.03 -2.39 -0.02 0.95 16 38 H 0.42 7.26 7.44 -92.71 -0.69 6.57 16 39 H 0.04 1.32 6.62 -2.39 -0.02 1.31 16 40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.09 1.55 7.33 -2.39 -0.02 1.53 16 43 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.03 1.02 5.81 -2.38 -0.01 1.01 16 48 H 0.08 1.96 8.09 -2.39 -0.02 1.94 16 49 H 0.12 2.99 8.10 -2.38 -0.02 2.97 16 50 H 0.11 2.98 6.23 -2.39 -0.01 2.97 16 51 H 0.39 15.59 5.76 -92.71 -0.53 15.06 16 52 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -78.69 403.31 -0.05 -78.73 By element: Atomic # 1 Polarization: 44.52 SS G_CDS: -0.36 Total: 44.16 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 5.59 Total: 8.71 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -7.10 Total: -120.43 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -0.08 Total: -52.96 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 1.90 Total: 41.78 kcal Total: -78.69 -0.05 -78.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266856528.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.945 kcal (2) G-P(sol) polarization free energy of solvation -78.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds