Wall clock time and date at job start Tue Mar 31 2020 19:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47262 * 2 1 4 4 H 1.09003 * 115.55793 * 29.31076 * 3 2 1 5 5 C 1.52997 * 117.49733 * 243.62099 * 3 2 1 6 6 C 1.52996 * 117.49752 * 174.99765 * 3 2 1 7 7 H 1.09001 * 117.51857 * 0.02562 * 6 3 2 8 8 C 1.50705 * 117.49813 * 214.97655 * 6 3 2 9 9 O 1.21277 * 119.99967 * 359.97438 * 8 6 3 10 10 N 1.34773 * 119.99626 * 179.97438 * 8 6 3 11 11 C 1.46507 * 119.99566 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46934 * 184.87466 * 11 10 8 13 13 H 1.09003 * 109.45290 * 173.96381 * 12 11 10 14 14 C 1.53040 * 109.45946 * 293.92800 * 12 11 10 15 15 C 1.53120 * 109.27782 * 179.19583 * 14 12 11 16 16 C 1.53120 * 109.16109 * 302.35095 * 15 14 12 17 17 C 1.53033 * 109.28036 * 57.65115 * 16 15 14 18 18 N 1.46839 * 109.52332 * 300.82263 * 17 16 15 19 19 C 1.46907 * 111.00206 * 185.83847 * 18 17 16 20 20 C 1.50700 * 109.46792 * 73.42738 * 19 18 17 21 21 O 1.21294 * 120.00348 * 359.97438 * 20 19 18 22 22 N 1.34782 * 119.99889 * 180.02562 * 20 19 18 23 23 C 1.37090 * 120.00149 * 179.97438 * 22 20 19 24 24 H 1.08003 * 120.00102 * 359.97438 * 23 22 20 25 25 C 1.38948 * 120.00083 * 179.97438 * 23 22 20 26 26 N 1.31405 * 120.00082 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00266 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47132 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47392 * 119.99924 * 27 25 23 30 30 H 1.48499 * 109.47114 * 240.00341 * 27 25 23 31 31 H 1.08995 * 109.47267 * 60.00100 * 1 2 3 32 32 H 1.08999 * 109.47129 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47150 * 300.00248 * 1 2 3 34 34 H 1.09001 * 109.47150 * 239.99752 * 2 1 3 35 35 H 1.09006 * 109.46576 * 120.00010 * 2 1 3 36 36 H 1.09002 * 117.49631 * 145.02038 * 5 3 2 37 37 H 1.09002 * 117.51684 * 359.97438 * 5 3 2 38 38 H 0.96997 * 120.00232 * 0.02562 * 10 8 6 39 39 H 1.08996 * 109.47184 * 64.87173 * 11 10 8 40 40 H 1.08997 * 109.47074 * 304.87493 * 11 10 8 41 41 H 1.09004 * 109.49995 * 59.26179 * 14 12 11 42 42 H 1.09000 * 109.50760 * 299.13895 * 14 12 11 43 43 H 1.09000 * 109.52484 * 182.44111 * 15 14 12 44 44 H 1.09001 * 109.57396 * 62.28455 * 15 14 12 45 45 H 1.08998 * 109.50164 * 297.70801 * 16 15 14 46 46 H 1.08999 * 109.50441 * 177.59559 * 16 15 14 47 47 H 1.09000 * 109.46050 * 180.80486 * 17 16 15 48 48 H 1.09003 * 109.46328 * 60.84185 * 17 16 15 49 49 H 1.09000 * 109.46865 * 313.43129 * 19 18 17 50 50 H 1.08998 * 109.47418 * 193.43023 * 19 18 17 51 51 H 0.97006 * 119.99566 * 359.71777 * 22 20 19 52 52 H 0.97007 * 120.00378 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8440 1.9075 -1.2158 6 6 3.5502 1.6578 0.1183 7 1 4.1806 0.7720 0.1958 8 6 4.0229 2.8620 0.8914 9 8 3.2159 3.6170 1.3910 10 7 5.3425 3.0998 1.0276 11 6 5.8020 4.2701 1.7797 12 6 7.3252 4.3742 1.6804 13 1 7.6570 5.3012 2.1481 14 6 7.9654 3.1837 2.3980 15 6 9.4889 3.2813 2.2788 16 6 9.8756 3.3225 0.7978 17 6 9.1799 4.5089 0.1267 18 7 7.7251 4.3685 0.2675 19 6 7.0199 5.4159 -0.4834 20 6 7.1059 5.1207 -1.9587 21 8 7.6968 4.1350 -2.3465 22 7 6.5270 5.9525 -2.8472 23 6 6.6056 5.6842 -4.1893 24 1 7.1318 4.8065 -4.5347 25 6 6.0083 6.5415 -5.1053 26 7 5.3677 7.6091 -4.6852 27 14 6.1160 6.1764 -6.9342 28 1 6.8867 4.9245 -7.1445 29 1 4.7478 6.0149 -7.4882 30 1 6.7999 7.2997 -7.6237 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8901 36 1 2.7213 2.9427 -1.5343 37 1 3.0102 1.1858 -2.0157 38 1 5.9879 2.4962 0.6278 39 1 5.5122 4.1668 2.8253 40 1 5.3485 5.1700 1.3642 41 1 7.6233 2.2557 1.9396 42 1 7.6811 3.1971 3.4501 43 1 9.9476 2.4126 2.7511 44 1 9.8362 4.1896 2.7713 45 1 9.5636 2.3967 0.3144 46 1 10.9559 3.4349 0.7068 47 1 9.4419 4.5326 -0.9310 48 1 9.5031 5.4354 0.6015 49 1 7.4807 6.3823 -0.2788 50 1 5.9739 5.4403 -0.1780 51 1 6.0515 6.7390 -2.5368 52 1 4.9510 8.2078 -5.3247 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266856529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:45 Heat of formation + Delta-G solvation = -59.858261 kcal Electronic energy + Delta-G solvation = -30595.673870 eV Core-core repulsion = 26595.146103 eV Total energy + Delta-G solvation = -4000.527767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.18062 -39.25968 -37.70198 -36.94898 -34.60571 -33.99658 -33.10123 -32.15546 -31.18174 -31.02502 -27.63827 -26.65676 -24.63372 -24.18830 -23.50238 -22.91901 -21.29818 -20.61930 -19.97342 -19.38785 -19.07689 -17.82894 -17.21346 -16.36849 -15.88777 -15.35720 -15.33470 -14.95637 -14.75340 -14.55068 -14.40224 -14.09548 -13.99316 -13.87452 -13.66275 -13.47019 -13.19542 -12.80601 -12.63707 -12.46787 -12.20281 -12.13252 -12.08407 -11.80107 -11.50758 -11.43547 -11.38690 -11.16445 -11.07906 -11.04704 -10.70694 -10.34151 -10.29561 -10.25200 -10.22370 -10.14707 -10.03163 -9.62150 -9.46598 -8.84624 -8.46465 -7.94974 -7.87517 -6.39111 -3.79860 2.69547 3.17135 3.26495 3.27772 3.34238 3.88558 3.92266 3.95984 4.23514 4.60225 4.64288 4.72394 4.80397 4.86921 4.92937 5.07861 5.10599 5.19087 5.20772 5.24453 5.25842 5.29882 5.36248 5.38534 5.52031 5.62929 5.66005 5.67403 5.73353 5.82459 5.82721 5.84033 5.87696 5.95375 5.95906 6.02990 6.04163 6.05661 6.10707 6.14355 6.29814 6.34335 6.39441 6.46126 6.62125 7.25818 7.35712 7.57176 7.75419 8.08960 8.44170 8.64647 9.20924 9.57898 10.09663 10.78781 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.006431 B = 0.004439 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4353.090150 B = 6306.537984 C = 9693.592678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.122 4.122 4 H 0.116 0.884 5 C -0.142 4.142 6 C -0.189 4.189 7 H 0.120 0.880 8 C 0.543 3.457 9 O -0.552 6.552 10 N -0.707 5.707 11 C 0.124 3.876 12 C 0.070 3.930 13 H 0.053 0.947 14 C -0.109 4.109 15 C -0.120 4.120 16 C -0.114 4.114 17 C 0.060 3.940 18 N -0.506 5.506 19 C 0.038 3.962 20 C 0.448 3.552 21 O -0.576 6.576 22 N -0.566 5.566 23 C -0.296 4.296 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.927 3.073 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.282 1.282 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.411 0.589 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.093 0.907 48 H 0.023 0.977 49 H 0.047 0.953 50 H 0.091 0.909 51 H 0.391 0.609 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 -10.453 14.345 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.140 4.140 4 H 0.134 0.866 5 C -0.180 4.180 6 C -0.210 4.210 7 H 0.138 0.862 8 C 0.330 3.670 9 O -0.430 6.430 10 N -0.359 5.359 11 C 0.000 4.000 12 C -0.039 4.039 13 H 0.071 0.929 14 C -0.146 4.146 15 C -0.158 4.158 16 C -0.152 4.152 17 C -0.068 4.068 18 N -0.231 5.231 19 C -0.093 4.093 20 C 0.233 3.767 21 O -0.460 6.460 22 N -0.203 5.203 23 C -0.426 4.426 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.754 3.246 28 H -0.193 1.193 29 H -0.208 1.208 30 H -0.208 1.208 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.248 0.752 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.111 0.889 48 H 0.041 0.959 49 H 0.065 0.935 50 H 0.109 0.891 51 H 0.224 0.776 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.580 -10.873 14.136 17.844 hybrid contribution 0.388 1.099 -0.626 1.323 sum -0.192 -9.774 13.510 16.676 Atomic orbital electron populations 1.21737 0.95328 1.01418 1.02175 1.21144 0.96132 0.93865 1.01993 1.22457 0.91377 0.98410 1.01787 0.86619 1.23105 1.01098 1.03626 0.90140 1.22238 0.97270 0.98882 1.02589 0.86194 1.19641 0.82243 0.85617 0.79519 1.90665 1.54167 1.48938 1.49279 1.45742 1.06916 1.28218 1.55058 1.21444 0.92997 0.89432 0.96160 1.21948 0.93681 0.98427 0.89888 0.92930 1.21602 0.95385 0.98337 0.99321 1.21588 0.95636 1.01425 0.97120 1.21557 0.99161 0.99743 0.94728 1.22128 0.86335 0.95811 1.02494 1.61454 1.06447 1.47591 1.07640 1.21988 0.99913 0.92747 0.94673 1.19685 0.84728 0.85710 0.86560 1.90498 1.46554 1.29045 1.79895 1.41877 1.48347 1.23864 1.06234 1.19710 1.32480 1.09534 0.80876 0.87941 1.25240 0.96656 0.95515 1.00536 1.69621 1.35713 1.13478 1.35506 0.85837 0.77969 0.78483 0.82268 1.19262 1.20771 1.20829 0.92432 0.92793 0.92610 0.91637 0.91655 0.88018 0.87780 0.75227 0.91331 0.91114 0.91031 0.91607 0.92022 0.92473 0.90851 0.91929 0.88854 0.95893 0.93494 0.89094 0.77638 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.87 37.16 0.37 -0.91 16 2 C -0.09 -0.88 6.22 -26.73 -0.17 -1.05 16 3 C -0.12 -1.46 5.25 -90.62 -0.48 -1.93 16 4 H 0.12 1.57 7.60 -51.93 -0.39 1.17 16 5 C -0.14 -1.87 9.88 -26.73 -0.26 -2.14 16 6 C -0.19 -2.42 5.91 -91.77 -0.54 -2.96 16 7 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 8 C 0.54 8.29 7.61 -10.98 -0.08 8.21 16 9 O -0.55 -10.17 16.25 5.56 0.09 -10.08 16 10 N -0.71 -9.64 5.13 -60.29 -0.31 -9.95 16 11 C 0.12 1.59 4.59 -4.04 -0.02 1.57 16 12 C 0.07 0.83 2.10 -67.72 -0.14 0.69 16 13 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 14 C -0.11 -1.09 5.26 -26.65 -0.14 -1.23 16 15 C -0.12 -1.18 6.00 -26.61 -0.16 -1.34 16 16 C -0.11 -1.36 6.09 -26.65 -0.16 -1.53 16 17 C 0.06 0.89 5.11 -3.84 -0.02 0.87 16 18 N -0.51 -7.65 3.56 -228.13 -0.81 -8.46 16 19 C 0.04 0.67 5.29 -4.97 -0.03 0.64 16 20 C 0.45 10.32 7.48 -10.98 -0.08 10.24 16 21 O -0.58 -14.89 14.55 5.55 0.08 -14.81 16 22 N -0.57 -14.31 5.29 -10.96 -0.06 -14.37 16 23 C -0.30 -8.21 9.68 -14.94 -0.14 -8.35 16 24 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 27 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 30 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.58 7.88 -51.93 -0.41 0.17 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.10 1.22 8.03 -51.93 -0.42 0.80 16 38 H 0.41 5.46 7.29 -40.82 -0.30 5.16 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.02 6.32 -51.93 -0.33 0.69 16 41 H 0.07 0.75 7.14 -51.93 -0.37 0.38 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 1.70 6.49 -51.93 -0.34 1.37 16 48 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.05 0.78 8.03 -51.93 -0.42 0.36 16 50 H 0.09 1.57 5.46 -51.93 -0.28 1.29 16 51 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 52 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 412.13 15.07 6.21 6.21 Total: -1.00 -31.52 412.13 -10.26 -41.78 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -9.01 Total: 16.36 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -2.16 Total: 1.27 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.45 Total: -56.79 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: 0.17 Total: -24.89 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.52 -10.26 -41.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266856529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.076 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds