Wall clock time and date at job start Tue Mar 31 2020 19:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47262 * 2 1 4 4 H 1.09003 * 115.55793 * 29.31076 * 3 2 1 5 5 C 1.52997 * 117.49733 * 243.62099 * 3 2 1 6 6 C 1.52996 * 117.49752 * 174.99765 * 3 2 1 7 7 H 1.09001 * 117.51857 * 0.02562 * 6 3 2 8 8 C 1.50705 * 117.49813 * 214.97655 * 6 3 2 9 9 O 1.21277 * 119.99967 * 359.97438 * 8 6 3 10 10 N 1.34773 * 119.99626 * 179.97438 * 8 6 3 11 11 C 1.46507 * 119.99566 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46934 * 184.87466 * 11 10 8 13 13 H 1.09003 * 109.45290 * 173.96381 * 12 11 10 14 14 C 1.53040 * 109.45946 * 293.92800 * 12 11 10 15 15 C 1.53120 * 109.27782 * 179.19583 * 14 12 11 16 16 C 1.53120 * 109.16109 * 302.35095 * 15 14 12 17 17 C 1.53033 * 109.28036 * 57.65115 * 16 15 14 18 18 N 1.46839 * 109.52332 * 300.82263 * 17 16 15 19 19 C 1.46907 * 111.00206 * 185.83847 * 18 17 16 20 20 C 1.50700 * 109.46792 * 73.42738 * 19 18 17 21 21 O 1.21294 * 120.00348 * 359.97438 * 20 19 18 22 22 N 1.34782 * 119.99889 * 180.02562 * 20 19 18 23 23 C 1.37090 * 120.00149 * 179.97438 * 22 20 19 24 24 H 1.08003 * 120.00102 * 359.97438 * 23 22 20 25 25 C 1.38948 * 120.00083 * 179.97438 * 23 22 20 26 26 N 1.31405 * 120.00082 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00266 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47132 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47392 * 119.99924 * 27 25 23 30 30 H 1.48499 * 109.47114 * 240.00341 * 27 25 23 31 31 H 1.08995 * 109.47267 * 60.00100 * 1 2 3 32 32 H 1.08999 * 109.47129 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47150 * 300.00248 * 1 2 3 34 34 H 1.09001 * 109.47150 * 239.99752 * 2 1 3 35 35 H 1.09006 * 109.46576 * 120.00010 * 2 1 3 36 36 H 1.09002 * 117.49631 * 145.02038 * 5 3 2 37 37 H 1.09002 * 117.51684 * 359.97438 * 5 3 2 38 38 H 0.96997 * 120.00232 * 0.02562 * 10 8 6 39 39 H 1.08996 * 109.47184 * 64.87173 * 11 10 8 40 40 H 1.08997 * 109.47074 * 304.87493 * 11 10 8 41 41 H 1.09004 * 109.49995 * 59.26179 * 14 12 11 42 42 H 1.09000 * 109.50760 * 299.13895 * 14 12 11 43 43 H 1.09000 * 109.52484 * 182.44111 * 15 14 12 44 44 H 1.09001 * 109.57396 * 62.28455 * 15 14 12 45 45 H 1.08998 * 109.50164 * 297.70801 * 16 15 14 46 46 H 1.08999 * 109.50441 * 177.59559 * 16 15 14 47 47 H 1.09000 * 109.46050 * 180.80486 * 17 16 15 48 48 H 1.09003 * 109.46328 * 60.84185 * 17 16 15 49 49 H 1.09000 * 109.46865 * 313.43129 * 19 18 17 50 50 H 1.08998 * 109.47418 * 193.43023 * 19 18 17 51 51 H 0.97006 * 119.99566 * 359.71777 * 22 20 19 52 52 H 0.97007 * 120.00378 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8440 1.9075 -1.2158 6 6 3.5502 1.6578 0.1183 7 1 4.1806 0.7720 0.1958 8 6 4.0229 2.8620 0.8914 9 8 3.2159 3.6170 1.3910 10 7 5.3425 3.0998 1.0276 11 6 5.8020 4.2701 1.7797 12 6 7.3252 4.3742 1.6804 13 1 7.6570 5.3012 2.1481 14 6 7.9654 3.1837 2.3980 15 6 9.4889 3.2813 2.2788 16 6 9.8756 3.3225 0.7978 17 6 9.1799 4.5089 0.1267 18 7 7.7251 4.3685 0.2675 19 6 7.0199 5.4159 -0.4834 20 6 7.1059 5.1207 -1.9587 21 8 7.6968 4.1350 -2.3465 22 7 6.5270 5.9525 -2.8472 23 6 6.6056 5.6842 -4.1893 24 1 7.1318 4.8065 -4.5347 25 6 6.0083 6.5415 -5.1053 26 7 5.3677 7.6091 -4.6852 27 14 6.1160 6.1764 -6.9342 28 1 6.8867 4.9245 -7.1445 29 1 4.7478 6.0149 -7.4882 30 1 6.7999 7.2997 -7.6237 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8901 36 1 2.7213 2.9427 -1.5343 37 1 3.0102 1.1858 -2.0157 38 1 5.9879 2.4962 0.6278 39 1 5.5122 4.1668 2.8253 40 1 5.3485 5.1700 1.3642 41 1 7.6233 2.2557 1.9396 42 1 7.6811 3.1971 3.4501 43 1 9.9476 2.4126 2.7511 44 1 9.8362 4.1896 2.7713 45 1 9.5636 2.3967 0.3144 46 1 10.9559 3.4349 0.7068 47 1 9.4419 4.5326 -0.9310 48 1 9.5031 5.4354 0.6015 49 1 7.4807 6.3823 -0.2788 50 1 5.9739 5.4403 -0.1780 51 1 6.0515 6.7390 -2.5368 52 1 4.9510 8.2078 -5.3247 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266856529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:44 Heat of formation + Delta-G solvation = -80.489687 kcal Electronic energy + Delta-G solvation = -30596.568515 eV Core-core repulsion = 26595.146103 eV Total energy + Delta-G solvation = -4001.422413 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.36408 -40.55304 -39.37115 -38.00886 -35.97775 -35.72053 -34.35202 -33.20935 -32.98387 -32.06837 -29.06677 -27.81560 -26.42636 -25.10954 -24.49938 -24.11819 -22.34957 -21.60165 -21.05097 -20.95170 -20.33462 -19.84638 -18.33498 -17.85390 -17.21812 -16.78334 -16.60189 -16.37773 -16.07034 -15.74011 -15.57827 -15.49287 -15.18141 -15.05641 -14.89718 -14.66845 -14.54925 -13.92371 -13.80791 -13.51380 -13.49324 -13.41920 -13.18533 -13.04304 -13.00645 -12.81980 -12.67594 -12.39624 -12.20786 -12.13269 -12.10483 -11.93213 -11.58260 -11.52220 -11.27792 -11.24307 -11.16954 -11.05584 -10.77001 -10.26896 -10.00402 -9.98453 -9.21341 -8.45456 -5.93964 1.35839 1.40425 1.50577 1.54663 2.07673 2.16900 2.28564 2.71230 2.88404 3.21198 3.37317 3.65500 3.70124 3.80650 3.80912 3.85991 4.00534 4.13306 4.17532 4.25841 4.26813 4.33968 4.38935 4.42946 4.47368 4.48431 4.57253 4.61453 4.65680 4.74148 4.78114 4.92290 4.93985 4.97205 4.97692 5.05804 5.12009 5.14805 5.21154 5.27043 5.30204 5.34961 5.41389 5.47089 5.51283 5.52886 5.90409 6.09405 6.22784 6.59677 6.61309 7.14453 7.26507 7.58095 8.13556 8.72496 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.006431 B = 0.004439 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4353.090150 B = 6306.537984 C = 9693.592678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.109 4.109 4 H 0.096 0.904 5 C -0.154 4.154 6 C -0.191 4.191 7 H 0.147 0.853 8 C 0.535 3.465 9 O -0.590 6.590 10 N -0.700 5.700 11 C 0.123 3.877 12 C 0.075 3.925 13 H 0.068 0.932 14 C -0.105 4.105 15 C -0.113 4.113 16 C -0.109 4.109 17 C 0.060 3.940 18 N -0.516 5.516 19 C 0.052 3.948 20 C 0.449 3.551 21 O -0.605 6.605 22 N -0.580 5.580 23 C -0.326 4.326 24 H 0.081 0.919 25 C -0.015 4.015 26 N -0.925 5.925 27 Si 0.991 3.009 28 H -0.271 1.271 29 H -0.273 1.273 30 H -0.272 1.272 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.414 0.586 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.050 0.950 48 H 0.035 0.965 49 H 0.061 0.939 50 H 0.095 0.905 51 H 0.391 0.609 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 -11.770 15.744 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.126 4.126 3 C -0.128 4.128 4 H 0.114 0.886 5 C -0.192 4.192 6 C -0.211 4.211 7 H 0.164 0.836 8 C 0.323 3.677 9 O -0.471 6.471 10 N -0.351 5.351 11 C -0.001 4.001 12 C -0.033 4.033 13 H 0.086 0.914 14 C -0.142 4.142 15 C -0.150 4.150 16 C -0.147 4.147 17 C -0.067 4.067 18 N -0.241 5.241 19 C -0.079 4.079 20 C 0.236 3.764 21 O -0.490 6.490 22 N -0.217 5.217 23 C -0.456 4.456 24 H 0.099 0.901 25 C -0.214 4.214 26 N -0.566 5.566 27 Si 0.815 3.185 28 H -0.195 1.195 29 H -0.198 1.198 30 H -0.197 1.197 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.251 0.749 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.069 0.931 48 H 0.053 0.947 49 H 0.079 0.921 50 H 0.113 0.887 51 H 0.224 0.776 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.031 -12.191 15.559 19.766 hybrid contribution 0.242 1.520 -1.018 1.846 sum 0.273 -10.670 14.541 18.038 Atomic orbital electron populations 1.21745 0.94782 1.02398 1.01760 1.21168 0.96573 0.91824 1.03081 1.22472 0.90593 0.99681 1.00029 0.88613 1.23083 1.02594 1.02439 0.91067 1.22365 0.98331 0.98783 1.01661 0.83571 1.20093 0.82403 0.85937 0.79268 1.90641 1.55093 1.50366 1.51036 1.45760 1.06509 1.28264 1.54538 1.21520 0.93544 0.88308 0.96754 1.22037 0.93039 1.00327 0.87901 0.91420 1.21624 0.95476 0.96862 1.00286 1.21555 0.95348 1.02922 0.95191 1.21521 0.99530 0.97469 0.96152 1.22075 0.86328 0.97918 1.00397 1.61415 1.06571 1.46528 1.09612 1.21765 1.00824 0.94248 0.91041 1.20627 0.82745 0.84473 0.88585 1.90470 1.47330 1.30157 1.81083 1.41972 1.49252 1.24473 1.06022 1.19674 1.33768 1.09637 0.82476 0.90122 1.26028 0.95817 0.95060 1.04540 1.69694 1.35945 1.13990 1.36996 0.84892 0.78239 0.78322 0.77032 1.19513 1.19811 1.19721 0.93005 0.91082 0.92959 0.90570 0.90425 0.91030 0.86164 0.74890 0.89651 0.93036 0.91453 0.89151 0.90029 0.91373 0.92341 0.90706 0.93105 0.94685 0.92087 0.88685 0.77581 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.87 71.98 0.71 -1.65 16 2 C -0.09 -1.52 6.22 30.60 0.19 -1.33 16 3 C -0.11 -2.59 5.25 -10.80 -0.06 -2.64 16 4 H 0.10 2.68 7.60 -2.39 -0.02 2.66 16 5 C -0.15 -4.14 9.88 30.59 0.30 -3.84 16 6 C -0.19 -4.81 5.91 -11.54 -0.07 -4.88 16 7 H 0.15 2.87 8.14 -2.39 -0.02 2.85 16 8 C 0.54 16.41 7.61 87.66 0.67 17.07 16 9 O -0.59 -22.22 16.25 -3.02 -0.05 -22.27 16 10 N -0.70 -18.66 5.13 -463.05 -2.38 -21.03 16 11 C 0.12 3.00 4.59 86.38 0.40 3.40 16 12 C 0.08 1.64 2.10 44.94 0.09 1.73 16 13 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 14 C -0.10 -1.76 5.26 30.65 0.16 -1.60 16 15 C -0.11 -1.81 6.00 30.67 0.18 -1.63 16 16 C -0.11 -2.42 6.09 30.65 0.19 -2.23 16 17 C 0.06 1.75 5.11 86.33 0.44 2.19 16 18 N -0.52 -15.25 3.56 -875.66 -3.11 -18.36 16 19 C 0.05 1.86 5.29 85.56 0.45 2.31 16 20 C 0.45 21.36 7.48 87.66 0.66 22.02 16 21 O -0.61 -32.44 14.55 -3.07 -0.04 -32.48 16 22 N -0.58 -30.39 5.29 -306.98 -1.62 -32.01 16 23 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 24 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 25 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 26 N -0.92 -51.30 13.05 21.66 0.28 -51.02 16 27 Si 0.99 43.56 29.55 68.60 2.03 45.58 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 29 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 30 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 1.17 7.88 -2.39 -0.02 1.15 16 35 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.12 2.78 8.03 -2.39 -0.02 2.76 16 38 H 0.41 10.64 7.29 -92.71 -0.68 9.96 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.48 6.32 -2.39 -0.02 1.46 16 41 H 0.07 1.22 7.14 -2.38 -0.02 1.20 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 45 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.05 1.91 6.49 -2.39 -0.02 1.89 16 48 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.06 2.00 8.03 -2.39 -0.02 1.99 16 50 H 0.10 3.33 5.46 -2.39 -0.01 3.32 16 51 H 0.39 20.05 7.90 -92.70 -0.73 19.32 16 52 H 0.28 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -70.74 412.13 0.22 -70.52 By element: Atomic # 1 Polarization: 50.84 SS G_CDS: -0.49 Total: 50.36 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 5.60 Total: 10.71 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -6.83 Total: -122.42 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: -0.09 Total: -54.75 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -70.74 0.22 -70.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266856529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.966 kcal (2) G-P(sol) polarization free energy of solvation -70.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds