Wall clock time and date at job start Tue Mar 31 2020 19:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.50700 * 119.99671 * 2 1 4 4 C 1.32999 * 119.99827 * 180.02562 * 2 1 3 5 5 C 1.47096 * 119.99539 * 172.84812 * 4 2 1 6 6 O 1.21618 * 120.00279 * 353.77579 * 5 4 2 7 7 N 1.34779 * 119.99967 * 173.77161 * 5 4 2 8 8 C 1.46502 * 120.00233 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46711 * 325.00289 * 8 7 5 10 10 C 1.52998 * 109.47262 * 84.99867 * 8 7 5 11 11 C 1.53009 * 109.46739 * 59.99999 * 10 8 7 12 12 C 1.52995 * 109.46861 * 60.00149 * 11 10 8 13 13 C 1.53005 * 109.47386 * 299.99748 * 12 11 10 14 14 C 1.52995 * 109.47303 * 205.00309 * 8 7 5 15 15 H 1.09002 * 109.47462 * 179.97438 * 14 8 7 16 16 C 1.52998 * 109.47322 * 59.99595 * 14 8 7 17 17 N 1.46902 * 109.47499 * 175.00092 * 16 14 8 18 18 C 1.46898 * 111.00329 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.47359 * 180.02562 * 18 17 16 20 20 O 1.21296 * 119.99676 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00056 * 180.02562 * 19 18 17 22 22 C 1.37104 * 119.99772 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99864 * 359.97438 * 22 21 19 24 24 C 1.38947 * 119.99646 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00231 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99605 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47207 * 89.99927 * 26 24 22 28 28 H 1.48509 * 109.46798 * 209.99585 * 26 24 22 29 29 H 1.48497 * 109.47331 * 329.99814 * 26 24 22 30 30 H 1.09003 * 109.46957 * 269.99055 * 1 2 3 31 31 H 1.08997 * 109.47241 * 29.99535 * 1 2 3 32 32 H 1.09000 * 109.47040 * 149.99785 * 1 2 3 33 33 H 1.08994 * 109.46994 * 264.50434 * 3 2 1 34 34 H 1.08994 * 109.46895 * 24.51266 * 3 2 1 35 35 H 1.09003 * 109.46480 * 144.50372 * 3 2 1 36 36 H 1.08001 * 119.99972 * 353.11816 * 4 2 1 37 37 H 0.97001 * 119.99481 * 0.02562 * 7 5 4 38 38 H 1.08990 * 109.47498 * 180.02562 * 10 8 7 39 39 H 1.09002 * 109.47348 * 300.00586 * 10 8 7 40 40 H 1.09002 * 109.47202 * 299.99844 * 11 10 8 41 41 H 1.08994 * 109.46772 * 179.97438 * 11 10 8 42 42 H 1.09003 * 109.47221 * 179.97438 * 12 11 10 43 43 H 1.09002 * 109.47462 * 59.99854 * 12 11 10 44 44 H 1.09002 * 109.46907 * 300.00446 * 13 12 11 45 45 H 1.08998 * 109.47070 * 180.02562 * 13 12 11 46 46 H 1.09002 * 109.47499 * 295.00526 * 16 14 8 47 47 H 1.09004 * 109.46754 * 55.00271 * 16 14 8 48 48 H 1.00899 * 110.99768 * 303.95782 * 17 16 14 49 49 H 1.09000 * 109.47250 * 300.00266 * 18 17 16 50 50 H 1.09004 * 109.46949 * 60.00128 * 18 17 16 51 51 H 0.96996 * 120.00247 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99830 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 3.6344 -1.1566 -0.1591 6 8 4.2231 -0.1207 -0.4027 7 7 4.3220 -2.3091 -0.0344 8 6 5.7784 -2.3141 -0.1929 9 1 6.0637 -1.5858 -0.9522 10 6 6.4376 -1.9477 1.1383 11 6 6.0370 -2.9699 2.2040 12 6 6.4984 -4.3634 1.7729 13 6 5.8392 -4.7298 0.4416 14 6 6.2398 -3.7076 -0.6240 15 1 7.3233 -3.7112 -0.7424 16 6 5.5806 -4.0740 -1.9552 17 7 6.1139 -5.3583 -2.4287 18 6 5.5027 -5.7427 -3.7080 19 6 6.0727 -7.0623 -4.1607 20 8 6.9065 -7.6267 -3.4843 21 7 5.6568 -7.6146 -5.3176 22 6 6.1750 -8.8154 -5.7291 23 1 6.9167 -9.3184 -5.1265 24 6 5.7458 -9.3851 -6.9215 25 7 4.8429 -8.7733 -7.6545 26 14 6.4524 -11.0208 -7.4826 27 1 5.6240 -12.1289 -6.9433 28 1 6.4501 -11.0780 -8.9666 29 1 7.8447 -11.1557 -6.9841 30 1 -0.3633 -0.0002 1.0277 31 1 -0.3633 0.8900 -0.5137 32 1 -0.3633 -0.8900 -0.5139 33 1 2.5274 1.5706 -1.0229 34 1 1.6323 2.0872 0.4264 35 1 3.1667 1.2014 0.5968 36 1 1.6378 -2.0838 0.1111 37 1 3.8524 -3.1354 0.1595 38 1 7.5210 -1.9509 1.0203 39 1 6.1088 -0.9548 1.4454 40 1 4.9534 -2.9662 2.3220 41 1 6.5070 -2.7091 3.1522 42 1 6.2135 -5.0916 2.5324 43 1 7.5820 -4.3671 1.6550 44 1 4.7556 -4.7261 0.5596 45 1 6.1676 -5.7228 0.1348 46 1 4.5027 -4.1573 -1.8162 47 1 5.7932 -3.2988 -2.6914 48 1 7.1196 -5.3266 -2.5038 49 1 4.4242 -5.8374 -3.5816 50 1 5.7152 -4.9789 -4.4562 51 1 4.9903 -7.1631 -5.8586 52 1 4.5436 -9.1709 -8.4871 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268765099.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:58 Heat of formation + Delta-G solvation = -80.851309 kcal Electronic energy + Delta-G solvation = -29392.842238 eV Core-core repulsion = 25391.404144 eV Total energy + Delta-G solvation = -4001.438094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.59569 -38.79700 -38.15403 -35.70146 -35.30152 -33.84929 -33.80081 -31.43596 -31.06814 -30.35495 -28.21265 -27.86523 -26.97003 -24.82856 -23.40896 -22.83099 -21.80158 -21.14033 -19.34736 -19.25636 -18.87143 -17.87261 -17.22360 -16.19333 -15.90740 -15.59921 -15.45688 -15.11997 -14.62768 -14.55122 -14.43007 -14.32859 -14.13150 -13.89390 -13.70497 -13.59043 -13.39589 -12.96776 -12.70335 -12.64906 -12.31952 -12.28633 -12.21016 -11.99920 -11.89341 -11.82558 -11.70150 -11.49918 -11.46392 -11.06369 -10.99764 -10.62011 -10.40640 -10.39232 -10.21637 -10.12830 -9.70144 -9.50581 -9.44917 -8.99660 -8.44961 -8.03682 -7.95193 -6.41432 -3.82278 1.13714 3.12117 3.15006 3.17983 3.26488 3.32382 3.91571 4.06254 4.26720 4.47617 4.54608 4.56555 4.65188 4.72975 4.93661 4.96775 5.06225 5.11658 5.14642 5.20066 5.21936 5.27608 5.32679 5.36950 5.38295 5.46829 5.49313 5.52412 5.59498 5.63482 5.76674 5.79152 5.83103 5.85378 5.94032 5.98589 5.99885 6.06252 6.11560 6.22580 6.25768 6.27998 6.31515 6.41774 6.47548 7.22406 7.43548 7.55426 7.67267 8.06791 8.15464 8.61695 9.18198 9.54906 10.06319 10.76367 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013341 B = 0.002159 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.308791 B =12966.134004 C =14506.718985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.032 4.032 3 C -0.124 4.124 4 C -0.238 4.238 5 C 0.546 3.454 6 O -0.545 6.545 7 N -0.717 5.717 8 C 0.154 3.846 9 H 0.086 0.914 10 C -0.127 4.127 11 C -0.117 4.117 12 C -0.122 4.122 13 C -0.107 4.107 14 C -0.091 4.091 15 H 0.085 0.915 16 C 0.064 3.936 17 N -0.666 5.666 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.400 0.600 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.086 0.914 46 H 0.070 0.930 47 H 0.026 0.974 48 H 0.348 0.652 49 H 0.084 0.916 50 H 0.042 0.958 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.547 18.158 17.740 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.034 4.034 3 C -0.180 4.180 4 C -0.259 4.259 5 C 0.336 3.664 6 O -0.425 6.425 7 N -0.368 5.368 8 C 0.048 3.952 9 H 0.104 0.896 10 C -0.166 4.166 11 C -0.154 4.154 12 C -0.159 4.159 13 C -0.145 4.145 14 C -0.110 4.110 15 H 0.103 0.897 16 C -0.065 4.065 17 N -0.298 5.298 18 C -0.082 4.082 19 C 0.227 3.773 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.143 0.857 37 H 0.236 0.764 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.104 0.896 46 H 0.088 0.912 47 H 0.044 0.956 48 H 0.167 0.833 49 H 0.102 0.898 50 H 0.060 0.940 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.062 18.051 18.194 26.337 hybrid contribution -0.058 -0.445 -1.293 1.368 sum -6.120 17.607 16.901 25.161 Atomic orbital electron populations 1.21018 0.91233 1.03410 1.02827 1.22564 0.95854 0.95487 0.89520 1.21146 1.00211 0.93033 1.03638 1.22389 0.93438 0.98985 1.11093 1.18539 0.87764 0.83434 0.76695 1.90748 1.71361 1.31485 1.48878 1.46035 1.07829 1.10467 1.72515 1.20925 0.79524 0.97300 0.97409 0.89584 1.21886 1.00502 0.99183 0.95032 1.21500 1.01023 0.95029 0.97889 1.21593 1.00704 0.96228 0.97419 1.21495 0.99719 1.00059 0.93221 1.21428 1.01106 0.93358 0.95097 0.89709 1.21979 0.99752 0.90076 0.94714 1.60086 1.11477 1.29239 1.28985 1.21659 0.99999 0.96162 0.90373 1.19816 0.86479 0.87709 0.83311 1.90519 1.35941 1.64512 1.55776 1.41872 1.38396 1.20642 1.19201 1.19701 1.21645 0.96783 1.04709 0.87927 1.25267 0.96692 0.99863 0.96186 1.69614 1.30428 1.39653 1.14669 0.85856 0.79450 0.81431 0.77536 1.20391 1.20947 1.19428 0.90488 0.90875 0.90987 0.90298 0.92827 0.89278 0.85744 0.76400 0.91123 0.91639 0.92179 0.92408 0.92077 0.91922 0.92680 0.89570 0.91205 0.95564 0.83259 0.89753 0.93999 0.77477 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.70 10.01 36.01 0.36 -0.34 16 2 C -0.03 -0.26 6.11 -101.16 -0.62 -0.88 16 3 C -0.12 -1.09 8.47 36.01 0.30 -0.78 16 4 C -0.24 -2.06 9.62 -37.81 -0.36 -2.43 16 5 C 0.55 5.86 7.58 -12.67 -0.10 5.77 16 6 O -0.54 -7.37 12.95 5.26 0.07 -7.30 16 7 N -0.72 -6.57 3.61 -54.99 -0.20 -6.77 16 8 C 0.15 1.49 2.23 -67.93 -0.15 1.34 16 9 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 10 C -0.13 -1.15 5.60 -26.73 -0.15 -1.30 16 11 C -0.12 -0.96 5.77 -26.73 -0.15 -1.11 16 12 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 13 C -0.11 -1.07 4.92 -26.73 -0.13 -1.20 16 14 C -0.09 -0.91 2.12 -90.62 -0.19 -1.10 16 15 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 16 C 0.06 0.77 4.84 -3.82 -0.02 0.76 16 17 N -0.67 -10.36 5.58 -115.06 -0.64 -11.00 16 18 C 0.05 0.90 6.17 -4.98 -0.03 0.86 16 19 C 0.44 10.42 7.82 -10.99 -0.09 10.33 16 20 O -0.58 -15.77 15.78 5.54 0.09 -15.68 16 21 N -0.56 -14.38 5.29 -10.96 -0.06 -14.43 16 22 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 23 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 26 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 33 H 0.08 0.76 8.04 -51.93 -0.42 0.35 16 34 H 0.05 0.36 8.09 -51.93 -0.42 -0.06 16 35 H 0.09 0.95 6.14 -51.93 -0.32 0.63 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.40 3.15 6.65 -40.82 -0.27 2.88 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.50 7.60 -51.93 -0.39 0.10 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.51 6.51 -51.93 -0.34 0.17 16 45 H 0.09 1.07 7.75 -51.93 -0.40 0.67 16 46 H 0.07 0.82 7.61 -51.93 -0.40 0.42 16 47 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.35 5.65 8.43 -39.29 -0.33 5.32 16 49 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 50 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 52 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 412.92 15.07 6.22 6.22 Total: -1.00 -31.96 412.92 -9.55 -41.52 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -9.01 Total: 14.63 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -1.73 Total: 0.67 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.17 Total: -56.14 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.16 Total: -22.98 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.96 -9.55 -41.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268765099.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.336 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds