Wall clock time and date at job start Tue Mar 31 2020 19:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.50700 * 119.99671 * 2 1 4 4 C 1.32999 * 119.99827 * 180.02562 * 2 1 3 5 5 C 1.47096 * 119.99539 * 172.84812 * 4 2 1 6 6 O 1.21618 * 120.00279 * 353.77579 * 5 4 2 7 7 N 1.34779 * 119.99967 * 173.77161 * 5 4 2 8 8 C 1.46502 * 120.00233 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46711 * 325.00289 * 8 7 5 10 10 C 1.52998 * 109.47262 * 84.99867 * 8 7 5 11 11 C 1.53009 * 109.46739 * 59.99999 * 10 8 7 12 12 C 1.52995 * 109.46861 * 60.00149 * 11 10 8 13 13 C 1.53005 * 109.47386 * 299.99748 * 12 11 10 14 14 C 1.52995 * 109.47303 * 205.00309 * 8 7 5 15 15 H 1.09002 * 109.47462 * 179.97438 * 14 8 7 16 16 C 1.52998 * 109.47322 * 59.99595 * 14 8 7 17 17 N 1.46902 * 109.47499 * 175.00092 * 16 14 8 18 18 C 1.46898 * 111.00329 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.47359 * 180.02562 * 18 17 16 20 20 O 1.21296 * 119.99676 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00056 * 180.02562 * 19 18 17 22 22 C 1.37104 * 119.99772 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99864 * 359.97438 * 22 21 19 24 24 C 1.38947 * 119.99646 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00231 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99605 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47207 * 89.99927 * 26 24 22 28 28 H 1.48509 * 109.46798 * 209.99585 * 26 24 22 29 29 H 1.48497 * 109.47331 * 329.99814 * 26 24 22 30 30 H 1.09003 * 109.46957 * 269.99055 * 1 2 3 31 31 H 1.08997 * 109.47241 * 29.99535 * 1 2 3 32 32 H 1.09000 * 109.47040 * 149.99785 * 1 2 3 33 33 H 1.08994 * 109.46994 * 264.50434 * 3 2 1 34 34 H 1.08994 * 109.46895 * 24.51266 * 3 2 1 35 35 H 1.09003 * 109.46480 * 144.50372 * 3 2 1 36 36 H 1.08001 * 119.99972 * 353.11816 * 4 2 1 37 37 H 0.97001 * 119.99481 * 0.02562 * 7 5 4 38 38 H 1.08990 * 109.47498 * 180.02562 * 10 8 7 39 39 H 1.09002 * 109.47348 * 300.00586 * 10 8 7 40 40 H 1.09002 * 109.47202 * 299.99844 * 11 10 8 41 41 H 1.08994 * 109.46772 * 179.97438 * 11 10 8 42 42 H 1.09003 * 109.47221 * 179.97438 * 12 11 10 43 43 H 1.09002 * 109.47462 * 59.99854 * 12 11 10 44 44 H 1.09002 * 109.46907 * 300.00446 * 13 12 11 45 45 H 1.08998 * 109.47070 * 180.02562 * 13 12 11 46 46 H 1.09002 * 109.47499 * 295.00526 * 16 14 8 47 47 H 1.09004 * 109.46754 * 55.00271 * 16 14 8 48 48 H 1.00899 * 110.99768 * 303.95782 * 17 16 14 49 49 H 1.09000 * 109.47250 * 300.00266 * 18 17 16 50 50 H 1.09004 * 109.46949 * 60.00128 * 18 17 16 51 51 H 0.96996 * 120.00247 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99830 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 3.6344 -1.1566 -0.1591 6 8 4.2231 -0.1207 -0.4027 7 7 4.3220 -2.3091 -0.0344 8 6 5.7784 -2.3141 -0.1929 9 1 6.0637 -1.5858 -0.9522 10 6 6.4376 -1.9477 1.1383 11 6 6.0370 -2.9699 2.2040 12 6 6.4984 -4.3634 1.7729 13 6 5.8392 -4.7298 0.4416 14 6 6.2398 -3.7076 -0.6240 15 1 7.3233 -3.7112 -0.7424 16 6 5.5806 -4.0740 -1.9552 17 7 6.1139 -5.3583 -2.4287 18 6 5.5027 -5.7427 -3.7080 19 6 6.0727 -7.0623 -4.1607 20 8 6.9065 -7.6267 -3.4843 21 7 5.6568 -7.6146 -5.3176 22 6 6.1750 -8.8154 -5.7291 23 1 6.9167 -9.3184 -5.1265 24 6 5.7458 -9.3851 -6.9215 25 7 4.8429 -8.7733 -7.6545 26 14 6.4524 -11.0208 -7.4826 27 1 5.6240 -12.1289 -6.9433 28 1 6.4501 -11.0780 -8.9666 29 1 7.8447 -11.1557 -6.9841 30 1 -0.3633 -0.0002 1.0277 31 1 -0.3633 0.8900 -0.5137 32 1 -0.3633 -0.8900 -0.5139 33 1 2.5274 1.5706 -1.0229 34 1 1.6323 2.0872 0.4264 35 1 3.1667 1.2014 0.5968 36 1 1.6378 -2.0838 0.1111 37 1 3.8524 -3.1354 0.1595 38 1 7.5210 -1.9509 1.0203 39 1 6.1088 -0.9548 1.4454 40 1 4.9534 -2.9662 2.3220 41 1 6.5070 -2.7091 3.1522 42 1 6.2135 -5.0916 2.5324 43 1 7.5820 -4.3671 1.6550 44 1 4.7556 -4.7261 0.5596 45 1 6.1676 -5.7228 0.1348 46 1 4.5027 -4.1573 -1.8162 47 1 5.7932 -3.2988 -2.6914 48 1 7.1196 -5.3266 -2.5038 49 1 4.4242 -5.8374 -3.5816 50 1 5.7152 -4.9789 -4.4562 51 1 4.9903 -7.1631 -5.8586 52 1 4.5436 -9.1709 -8.4871 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268765099.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:57 Heat of formation + Delta-G solvation = -101.822470 kcal Electronic energy + Delta-G solvation = -29393.751616 eV Core-core repulsion = 25391.404144 eV Total energy + Delta-G solvation = -4002.347472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.42090 -40.16933 -39.48837 -36.72004 -36.24204 -35.79570 -34.61465 -33.29156 -32.28754 -31.12715 -28.89947 -28.61715 -28.22846 -26.44665 -24.68122 -23.64917 -22.56653 -22.04854 -21.09637 -20.04631 -19.94740 -19.61532 -17.97969 -17.81762 -17.00835 -16.72754 -16.49190 -16.26317 -16.09069 -15.84247 -15.36920 -15.30315 -15.11939 -14.99572 -14.81567 -14.72307 -14.33156 -14.17900 -13.58675 -13.50687 -13.36636 -13.29013 -13.22245 -13.08996 -12.95407 -12.87346 -12.71521 -12.63648 -12.51664 -12.41787 -12.36140 -12.12295 -11.84836 -11.50786 -11.38361 -11.23621 -10.94715 -10.52930 -10.34690 -10.16735 -10.01976 -9.73212 -9.31662 -8.46977 -5.95820 0.46313 1.37988 1.41696 1.54531 2.04859 2.28830 2.36632 2.37785 2.88646 3.20272 3.48292 3.74395 3.81012 3.84436 3.91786 3.97002 4.16791 4.27934 4.32204 4.34141 4.36696 4.48005 4.51891 4.56827 4.59584 4.60509 4.68001 4.69979 4.70483 4.78515 4.81108 4.91290 4.93332 5.02236 5.06369 5.17184 5.20752 5.23490 5.29225 5.36976 5.40702 5.53288 5.55772 5.59020 5.65917 5.70035 5.88016 6.09307 6.38945 6.59561 6.68832 7.12161 7.37263 7.55831 8.10854 8.70503 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013341 B = 0.002159 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.308791 B =12966.134004 C =14506.718985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.031 4.031 3 C -0.123 4.123 4 C -0.250 4.250 5 C 0.539 3.461 6 O -0.579 6.579 7 N -0.708 5.708 8 C 0.160 3.840 9 H 0.068 0.932 10 C -0.123 4.123 11 C -0.110 4.110 12 C -0.117 4.117 13 C -0.103 4.103 14 C -0.081 4.081 15 H 0.084 0.916 16 C 0.069 3.931 17 N -0.672 5.672 18 C 0.065 3.935 19 C 0.439 3.561 20 O -0.621 6.621 21 N -0.574 5.574 22 C -0.333 4.333 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.270 1.270 28 H -0.271 1.271 29 H -0.273 1.273 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.147 0.853 37 H 0.408 0.592 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.078 0.922 47 H 0.026 0.974 48 H 0.343 0.657 49 H 0.103 0.897 50 H 0.060 0.940 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.936 18.280 18.353 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.033 4.033 3 C -0.179 4.179 4 C -0.271 4.271 5 C 0.330 3.670 6 O -0.462 6.462 7 N -0.360 5.360 8 C 0.055 3.945 9 H 0.086 0.914 10 C -0.161 4.161 11 C -0.147 4.147 12 C -0.155 4.155 13 C -0.140 4.140 14 C -0.100 4.100 15 H 0.102 0.898 16 C -0.060 4.060 17 N -0.304 5.304 18 C -0.068 4.068 19 C 0.227 3.773 20 O -0.508 6.508 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.197 1.197 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.165 0.835 37 H 0.246 0.754 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.044 0.956 48 H 0.161 0.839 49 H 0.121 0.879 50 H 0.078 0.922 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.479 18.178 18.813 27.209 hybrid contribution 0.377 -0.410 -1.448 1.552 sum -7.102 17.768 17.364 25.839 Atomic orbital electron populations 1.21063 0.88979 1.04190 1.03950 1.22845 0.97405 0.94794 0.88225 1.21080 0.99897 0.94404 1.02530 1.22507 0.92191 1.00269 1.12150 1.18969 0.88757 0.83124 0.76115 1.90739 1.72203 1.32682 1.50598 1.45963 1.07536 1.10564 1.71931 1.20780 0.80010 0.96337 0.97390 0.91366 1.21832 1.00737 0.98796 0.94776 1.21444 1.01204 0.94233 0.97850 1.21547 1.00497 0.96641 0.96784 1.21426 1.00391 0.98502 0.93723 1.21323 1.00901 0.93552 0.94207 0.89817 1.22018 1.00181 0.88320 0.95443 1.60102 1.11162 1.31373 1.27808 1.21521 1.00584 0.92965 0.91711 1.20844 0.85324 0.89092 0.82089 1.90489 1.37525 1.66099 1.56643 1.41946 1.38781 1.20377 1.20037 1.19670 1.22581 0.98378 1.05626 0.90257 1.26057 0.96702 1.02967 0.95666 1.69675 1.30754 1.40856 1.14936 0.84921 0.78486 0.77340 0.77553 1.19576 1.19581 1.19741 0.89019 0.90074 0.90252 0.91640 0.90829 0.91431 0.83535 0.75421 0.90608 0.92844 0.91948 0.91508 0.91421 0.92080 0.91717 0.91982 0.90390 0.95559 0.83854 0.87882 0.92185 0.77034 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 10.01 71.24 0.71 -0.34 16 2 C -0.03 -0.45 6.11 -17.61 -0.11 -0.56 16 3 C -0.12 -2.10 8.47 71.24 0.60 -1.50 16 4 C -0.25 -3.98 9.62 23.43 0.23 -3.75 16 5 C 0.54 11.31 7.58 86.57 0.66 11.96 16 6 O -0.58 -15.98 12.95 -4.09 -0.05 -16.03 16 7 N -0.71 -12.26 3.61 -446.14 -1.61 -13.87 16 8 C 0.16 3.01 2.23 44.99 0.10 3.11 16 9 H 0.07 1.57 7.58 -2.39 -0.02 1.55 16 10 C -0.12 -2.12 5.60 30.60 0.17 -1.95 16 11 C -0.11 -1.63 5.77 30.60 0.18 -1.45 16 12 C -0.12 -1.87 5.92 30.59 0.18 -1.69 16 13 C -0.10 -1.92 4.92 30.60 0.15 -1.77 16 14 C -0.08 -1.55 2.12 -10.80 -0.02 -1.57 16 15 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 16 C 0.07 1.58 4.84 86.30 0.42 2.00 16 17 N -0.67 -20.44 5.58 -517.93 -2.89 -23.33 16 18 C 0.06 2.21 6.17 85.56 0.53 2.74 16 19 C 0.44 20.88 7.82 87.66 0.69 21.56 16 20 O -0.62 -34.26 15.78 -3.08 -0.05 -34.31 16 21 N -0.57 -29.60 5.29 -306.99 -1.62 -31.22 16 22 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 23 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 25 N -0.92 -49.92 13.05 21.66 0.28 -49.64 16 26 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 29 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.57 8.12 -2.39 -0.02 0.55 16 32 H 0.08 0.58 8.07 -2.39 -0.02 0.56 16 33 H 0.07 1.29 8.04 -2.39 -0.02 1.27 16 34 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 35 H 0.07 1.47 6.14 -2.39 -0.01 1.46 16 36 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.41 5.71 6.65 -92.71 -0.62 5.09 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 0.91 7.60 -2.39 -0.02 0.90 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 1.08 6.51 -2.39 -0.02 1.06 16 45 H 0.06 1.51 7.75 -2.39 -0.02 1.49 16 46 H 0.08 1.67 7.61 -2.39 -0.02 1.65 16 47 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 48 H 0.34 11.10 8.43 -89.69 -0.76 10.34 16 49 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 50 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 51 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 52 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -69.82 412.92 0.67 -69.15 By element: Atomic # 1 Polarization: 47.08 SS G_CDS: -1.17 Total: 45.91 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 5.76 Total: 8.32 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -5.84 Total: -118.06 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.10 Total: -50.35 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -69.82 0.67 -69.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268765099.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.672 kcal (2) G-P(sol) polarization free energy of solvation -69.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds