Wall clock time and date at job start Tue Mar 31 2020 19:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50693 * 120.00564 * 2 1 4 4 C 1.33000 * 119.99510 * 180.02562 * 2 1 3 5 5 C 1.47105 * 120.00070 * 352.86444 * 4 2 1 6 6 O 1.21612 * 120.00024 * 353.85964 * 5 4 2 7 7 N 1.34769 * 119.99725 * 173.86528 * 5 4 2 8 8 C 1.46503 * 119.99844 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.47128 * 34.99295 * 8 7 5 10 10 C 1.53011 * 109.46759 * 274.99402 * 8 7 5 11 11 C 1.53000 * 109.47065 * 299.99904 * 10 8 7 12 12 C 1.53003 * 109.47176 * 300.00073 * 11 10 8 13 13 C 1.52999 * 109.47059 * 60.00258 * 12 11 10 14 14 C 1.52994 * 109.47458 * 154.99583 * 8 7 5 15 15 H 1.08994 * 109.47404 * 179.97438 * 14 8 7 16 16 C 1.53002 * 109.47370 * 299.99829 * 14 8 7 17 17 N 1.46897 * 109.47462 * 184.99949 * 16 14 8 18 18 C 1.46893 * 110.99908 * 179.97438 * 17 16 14 19 19 C 1.50709 * 109.47013 * 179.97438 * 18 17 16 20 20 O 1.21285 * 119.99807 * 359.72789 * 19 18 17 21 21 N 1.34773 * 119.99666 * 180.02562 * 19 18 17 22 22 C 1.37103 * 119.99838 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99655 * 359.97438 * 22 21 19 24 24 C 1.38939 * 120.00365 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00026 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00359 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46851 * 60.00079 * 26 24 22 28 28 H 1.48500 * 109.47135 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47151 * 300.00198 * 26 24 22 30 30 H 1.08995 * 109.47825 * 144.69478 * 1 2 3 31 31 H 1.09007 * 109.46775 * 264.69440 * 1 2 3 32 32 H 1.08997 * 109.46630 * 24.68576 * 1 2 3 33 33 H 1.09003 * 109.47488 * 270.00640 * 3 2 1 34 34 H 1.09002 * 109.47298 * 30.00307 * 3 2 1 35 35 H 1.09001 * 109.47215 * 150.00137 * 3 2 1 36 36 H 1.07997 * 120.00033 * 172.86759 * 4 2 1 37 37 H 0.97001 * 120.00606 * 359.97438 * 7 5 4 38 38 H 1.08999 * 109.47008 * 179.97438 * 10 8 7 39 39 H 1.09000 * 109.46513 * 60.00054 * 10 8 7 40 40 H 1.08999 * 109.46813 * 179.97438 * 11 10 8 41 41 H 1.09008 * 109.46968 * 60.00157 * 11 10 8 42 42 H 1.09000 * 109.46613 * 299.99918 * 12 11 10 43 43 H 1.08995 * 109.47154 * 180.02562 * 12 11 10 44 44 H 1.08999 * 109.46655 * 180.02562 * 13 12 11 45 45 H 1.08994 * 109.47606 * 59.99597 * 13 12 11 46 46 H 1.08999 * 109.46558 * 64.99618 * 16 14 8 47 47 H 1.09002 * 109.46757 * 305.00157 * 16 14 8 48 48 H 1.00897 * 110.99748 * 56.04268 * 17 16 14 49 49 H 1.08997 * 109.47583 * 60.00239 * 18 17 16 50 50 H 1.08997 * 109.47299 * 299.99921 * 18 17 16 51 51 H 0.96996 * 120.00699 * 359.97438 * 21 19 18 52 52 H 0.96998 * 120.00420 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1719 -1.1519 -0.0005 5 6 1.4448 -2.4209 0.1572 6 8 0.2531 -2.4129 0.3994 7 7 2.0995 -3.5924 0.0333 8 6 1.3753 -4.8563 0.1898 9 1 0.3661 -4.7484 -0.2077 10 6 1.3026 -5.2220 1.6737 11 6 2.7192 -5.3734 2.2316 12 6 3.4521 -6.4790 1.4692 13 6 3.5249 -6.1133 -0.0147 14 6 2.1082 -5.9619 -0.5726 15 1 1.5697 -6.9023 -0.4558 16 6 2.1810 -5.5962 -2.0565 17 7 2.7771 -6.7097 -2.8066 18 6 2.8626 -6.3937 -4.2386 19 6 3.4783 -7.5564 -4.9737 20 8 3.8175 -8.5484 -4.3638 21 7 3.6575 -7.4914 -6.3079 22 6 4.2172 -8.5493 -6.9767 23 1 4.5148 -9.4345 -6.4343 24 6 4.4024 -8.4822 -8.3521 25 7 4.0407 -7.4049 -9.0120 26 14 5.1656 -9.9233 -9.2633 27 1 4.3230 -11.1312 -9.0733 28 1 5.2526 -9.6036 -10.7109 29 1 6.5274 -10.1809 -8.7300 30 1 -0.3634 -0.8386 -0.5939 31 1 -0.3633 -0.0950 1.0233 32 1 -0.3632 0.9337 -0.4292 33 1 2.4422 1.6197 -1.0277 34 1 1.6716 2.0647 0.5139 35 1 3.2130 1.1745 0.5138 36 1 3.2456 -1.1555 -0.1166 37 1 3.0499 -3.5989 -0.1602 38 1 0.7634 -6.1621 1.7902 39 1 0.7804 -4.4343 2.2168 40 1 2.6673 -5.6335 3.2889 41 1 3.2580 -4.4330 2.1152 42 1 2.9133 -7.4193 1.5857 43 1 4.4612 -6.5872 1.8669 44 1 4.0466 -6.9012 -0.5579 45 1 4.0636 -5.1730 -0.1312 46 1 2.7948 -4.7042 -2.1811 47 1 1.1765 -5.4015 -2.4324 48 1 2.2624 -7.5642 -2.6552 49 1 3.4809 -5.5072 -4.3789 50 1 1.8627 -6.2048 -4.6293 51 1 3.3898 -6.6965 -6.7951 52 1 4.1697 -7.3581 -9.9722 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268765102.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:07 Heat of formation + Delta-G solvation = -80.680659 kcal Electronic energy + Delta-G solvation = -29405.939759 eV Core-core repulsion = 25404.509065 eV Total energy + Delta-G solvation = -4001.430694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.59445 -38.79681 -38.15453 -35.70011 -35.30043 -33.84922 -33.80026 -31.43607 -31.06815 -30.35163 -28.20917 -27.85999 -26.96842 -24.82762 -23.40790 -22.82924 -21.79995 -21.14004 -19.34697 -19.25440 -18.87142 -17.87200 -17.22028 -16.19737 -15.86722 -15.57046 -15.54637 -15.06919 -14.72911 -14.51368 -14.38572 -14.33970 -14.14401 -13.85726 -13.70319 -13.58569 -13.39712 -12.96800 -12.71027 -12.63504 -12.33706 -12.28861 -12.21259 -11.94035 -11.89153 -11.82510 -11.72892 -11.49774 -11.46383 -11.05064 -10.98795 -10.61722 -10.44348 -10.38811 -10.21098 -10.12757 -9.73793 -9.49636 -9.42587 -8.98574 -8.44926 -8.03635 -7.95220 -6.41237 -3.82204 1.14060 3.11986 3.15568 3.20277 3.25853 3.30270 3.91636 4.06336 4.26753 4.47968 4.54770 4.56573 4.65313 4.73135 4.93662 4.96927 5.06304 5.12295 5.14816 5.20091 5.22005 5.27672 5.33163 5.37125 5.39284 5.46621 5.49036 5.52569 5.59927 5.63252 5.76695 5.79506 5.83252 5.86057 5.94552 5.98742 5.99955 6.06397 6.11668 6.22952 6.26043 6.28759 6.32044 6.41892 6.47754 7.22384 7.43717 7.55287 7.67209 8.06618 8.15640 8.61799 9.18184 9.54925 10.06409 10.76490 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012797 B = 0.002192 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.430040 B =12771.082143 C =14370.857290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.032 4.032 3 C -0.128 4.128 4 C -0.239 4.239 5 C 0.546 3.454 6 O -0.545 6.545 7 N -0.717 5.717 8 C 0.154 3.846 9 H 0.086 0.914 10 C -0.128 4.128 11 C -0.117 4.117 12 C -0.122 4.122 13 C -0.107 4.107 14 C -0.091 4.091 15 H 0.085 0.915 16 C 0.065 3.935 17 N -0.666 5.666 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.125 0.875 37 H 0.400 0.600 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.026 0.974 48 H 0.348 0.652 49 H 0.084 0.916 50 H 0.042 0.958 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.667 15.053 20.456 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.034 4.034 3 C -0.185 4.185 4 C -0.260 4.260 5 C 0.336 3.664 6 O -0.425 6.425 7 N -0.369 5.369 8 C 0.049 3.951 9 H 0.104 0.896 10 C -0.166 4.166 11 C -0.154 4.154 12 C -0.159 4.159 13 C -0.145 4.145 14 C -0.110 4.110 15 H 0.103 0.897 16 C -0.065 4.065 17 N -0.298 5.298 18 C -0.082 4.082 19 C 0.227 3.773 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.142 0.858 37 H 0.236 0.764 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.044 0.956 48 H 0.167 0.833 49 H 0.102 0.898 50 H 0.060 0.940 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.616 14.594 20.940 25.938 hybrid contribution -0.121 -0.206 -1.283 1.305 sum -4.737 14.388 19.657 24.816 Atomic orbital electron populations 1.21156 0.90903 1.02519 1.03516 1.22563 0.96894 0.94457 0.89450 1.21016 1.00065 0.94427 1.02974 1.22384 1.00277 0.92139 1.11155 1.18538 0.86889 0.84284 0.76712 1.90745 1.15136 1.87672 1.48927 1.46034 1.12973 1.05353 1.72491 1.20927 0.96389 0.82607 0.95222 0.89598 1.21889 0.97377 1.01804 0.95556 1.21500 0.95805 0.99103 0.99030 1.21591 1.00238 0.98466 0.95645 1.21496 0.95721 1.02396 0.94885 1.21430 0.97458 0.98131 0.93970 0.89707 1.21978 0.97164 0.94880 0.92493 1.60082 1.57284 1.05081 1.07333 1.21659 0.99515 0.98595 0.88419 1.19814 0.85416 0.89131 0.82969 1.90516 1.55376 1.33785 1.67072 1.41864 1.54644 1.18002 1.05572 1.19651 1.36419 0.96732 0.90105 0.87984 1.25262 0.97833 0.98179 0.96691 1.69604 1.47804 1.27725 1.09257 0.85916 0.79633 0.80784 0.77874 1.19922 1.20986 1.19875 0.89149 0.90410 0.92753 0.90348 0.90924 0.91100 0.85758 0.76400 0.91133 0.91616 0.92407 0.92193 0.91922 0.92076 0.89566 0.92676 0.91198 0.95571 0.83265 0.89752 0.94011 0.77475 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 8.47 36.01 0.31 -0.81 16 2 C -0.03 -0.26 6.11 -101.17 -0.62 -0.88 16 3 C -0.13 -0.70 10.01 36.00 0.36 -0.34 16 4 C -0.24 -2.07 9.62 -37.80 -0.36 -2.43 16 5 C 0.55 5.87 7.58 -12.67 -0.10 5.77 16 6 O -0.54 -7.37 12.95 5.27 0.07 -7.30 16 7 N -0.72 -6.58 3.61 -54.99 -0.20 -6.78 16 8 C 0.15 1.49 2.23 -67.93 -0.15 1.34 16 9 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 10 C -0.13 -1.16 5.60 -26.73 -0.15 -1.31 16 11 C -0.12 -0.97 5.77 -26.73 -0.15 -1.12 16 12 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 13 C -0.11 -1.07 4.92 -26.73 -0.13 -1.20 16 14 C -0.09 -0.91 2.12 -90.62 -0.19 -1.10 16 15 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 16 C 0.06 0.77 4.84 -3.82 -0.02 0.76 16 17 N -0.67 -10.34 5.58 -115.06 -0.64 -10.98 16 18 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 19 C 0.44 10.41 7.82 -10.98 -0.09 10.32 16 20 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 21 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 22 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.66 13.05 55.49 0.72 -23.94 16 26 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 30 H 0.09 1.01 6.12 -51.93 -0.32 0.69 16 31 H 0.08 0.73 8.05 -51.92 -0.42 0.32 16 32 H 0.05 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 35 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.40 3.16 6.65 -40.82 -0.27 2.89 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.50 7.60 -51.92 -0.39 0.11 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.09 1.07 7.75 -51.93 -0.40 0.67 16 45 H 0.05 0.51 6.50 -51.93 -0.34 0.17 16 46 H 0.07 0.82 7.61 -51.93 -0.40 0.42 16 47 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.35 5.64 8.44 -39.29 -0.33 5.31 16 49 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 50 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 52 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 412.91 15.07 6.22 6.22 Total: -1.00 -31.92 412.91 -9.55 -41.47 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -9.01 Total: 14.72 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.73 Total: 0.60 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.17 Total: -56.12 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.16 Total: -22.98 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.92 -9.55 -41.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268765102.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.214 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds