Wall clock time and date at job start Tue Mar 31 2020 19:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50693 * 120.00564 * 2 1 4 4 C 1.33000 * 119.99510 * 180.02562 * 2 1 3 5 5 C 1.47105 * 120.00070 * 352.86444 * 4 2 1 6 6 O 1.21612 * 120.00024 * 353.85964 * 5 4 2 7 7 N 1.34769 * 119.99725 * 173.86528 * 5 4 2 8 8 C 1.46503 * 119.99844 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.47128 * 34.99295 * 8 7 5 10 10 C 1.53011 * 109.46759 * 274.99402 * 8 7 5 11 11 C 1.53000 * 109.47065 * 299.99904 * 10 8 7 12 12 C 1.53003 * 109.47176 * 300.00073 * 11 10 8 13 13 C 1.52999 * 109.47059 * 60.00258 * 12 11 10 14 14 C 1.52994 * 109.47458 * 154.99583 * 8 7 5 15 15 H 1.08994 * 109.47404 * 179.97438 * 14 8 7 16 16 C 1.53002 * 109.47370 * 299.99829 * 14 8 7 17 17 N 1.46897 * 109.47462 * 184.99949 * 16 14 8 18 18 C 1.46893 * 110.99908 * 179.97438 * 17 16 14 19 19 C 1.50709 * 109.47013 * 179.97438 * 18 17 16 20 20 O 1.21285 * 119.99807 * 359.72789 * 19 18 17 21 21 N 1.34773 * 119.99666 * 180.02562 * 19 18 17 22 22 C 1.37103 * 119.99838 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99655 * 359.97438 * 22 21 19 24 24 C 1.38939 * 120.00365 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00026 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00359 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46851 * 60.00079 * 26 24 22 28 28 H 1.48500 * 109.47135 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47151 * 300.00198 * 26 24 22 30 30 H 1.08995 * 109.47825 * 144.69478 * 1 2 3 31 31 H 1.09007 * 109.46775 * 264.69440 * 1 2 3 32 32 H 1.08997 * 109.46630 * 24.68576 * 1 2 3 33 33 H 1.09003 * 109.47488 * 270.00640 * 3 2 1 34 34 H 1.09002 * 109.47298 * 30.00307 * 3 2 1 35 35 H 1.09001 * 109.47215 * 150.00137 * 3 2 1 36 36 H 1.07997 * 120.00033 * 172.86759 * 4 2 1 37 37 H 0.97001 * 120.00606 * 359.97438 * 7 5 4 38 38 H 1.08999 * 109.47008 * 179.97438 * 10 8 7 39 39 H 1.09000 * 109.46513 * 60.00054 * 10 8 7 40 40 H 1.08999 * 109.46813 * 179.97438 * 11 10 8 41 41 H 1.09008 * 109.46968 * 60.00157 * 11 10 8 42 42 H 1.09000 * 109.46613 * 299.99918 * 12 11 10 43 43 H 1.08995 * 109.47154 * 180.02562 * 12 11 10 44 44 H 1.08999 * 109.46655 * 180.02562 * 13 12 11 45 45 H 1.08994 * 109.47606 * 59.99597 * 13 12 11 46 46 H 1.08999 * 109.46558 * 64.99618 * 16 14 8 47 47 H 1.09002 * 109.46757 * 305.00157 * 16 14 8 48 48 H 1.00897 * 110.99748 * 56.04268 * 17 16 14 49 49 H 1.08997 * 109.47583 * 60.00239 * 18 17 16 50 50 H 1.08997 * 109.47299 * 299.99921 * 18 17 16 51 51 H 0.96996 * 120.00699 * 359.97438 * 21 19 18 52 52 H 0.96998 * 120.00420 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1719 -1.1519 -0.0005 5 6 1.4448 -2.4209 0.1572 6 8 0.2531 -2.4129 0.3994 7 7 2.0995 -3.5924 0.0333 8 6 1.3753 -4.8563 0.1898 9 1 0.3661 -4.7484 -0.2077 10 6 1.3026 -5.2220 1.6737 11 6 2.7192 -5.3734 2.2316 12 6 3.4521 -6.4790 1.4692 13 6 3.5249 -6.1133 -0.0147 14 6 2.1082 -5.9619 -0.5726 15 1 1.5697 -6.9023 -0.4558 16 6 2.1810 -5.5962 -2.0565 17 7 2.7771 -6.7097 -2.8066 18 6 2.8626 -6.3937 -4.2386 19 6 3.4783 -7.5564 -4.9737 20 8 3.8175 -8.5484 -4.3638 21 7 3.6575 -7.4914 -6.3079 22 6 4.2172 -8.5493 -6.9767 23 1 4.5148 -9.4345 -6.4343 24 6 4.4024 -8.4822 -8.3521 25 7 4.0407 -7.4049 -9.0120 26 14 5.1656 -9.9233 -9.2633 27 1 4.3230 -11.1312 -9.0733 28 1 5.2526 -9.6036 -10.7109 29 1 6.5274 -10.1809 -8.7300 30 1 -0.3634 -0.8386 -0.5939 31 1 -0.3633 -0.0950 1.0233 32 1 -0.3632 0.9337 -0.4292 33 1 2.4422 1.6197 -1.0277 34 1 1.6716 2.0647 0.5139 35 1 3.2130 1.1745 0.5138 36 1 3.2456 -1.1555 -0.1166 37 1 3.0499 -3.5989 -0.1602 38 1 0.7634 -6.1621 1.7902 39 1 0.7804 -4.4343 2.2168 40 1 2.6673 -5.6335 3.2889 41 1 3.2580 -4.4330 2.1152 42 1 2.9133 -7.4193 1.5857 43 1 4.4612 -6.5872 1.8669 44 1 4.0466 -6.9012 -0.5579 45 1 4.0636 -5.1730 -0.1312 46 1 2.7948 -4.7042 -2.1811 47 1 1.1765 -5.4015 -2.4324 48 1 2.2624 -7.5642 -2.6552 49 1 3.4809 -5.5072 -4.3789 50 1 1.8627 -6.2048 -4.6293 51 1 3.3898 -6.6965 -6.7951 52 1 4.1697 -7.3581 -9.9722 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268765102.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:06 Heat of formation + Delta-G solvation = -101.611500 kcal Electronic energy + Delta-G solvation = -29406.847388 eV Core-core repulsion = 25404.509065 eV Total energy + Delta-G solvation = -4002.338323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.42085 -40.16944 -39.48950 -36.72173 -36.24077 -35.79533 -34.61473 -33.29071 -32.28819 -31.12552 -28.89801 -28.61928 -28.22758 -26.44524 -24.68069 -23.64886 -22.56620 -22.04893 -21.09545 -20.04542 -19.94628 -19.61703 -17.97814 -17.81746 -17.00556 -16.69276 -16.48370 -16.34470 -16.06948 -15.79239 -15.50787 -15.27793 -15.02839 -14.99174 -14.82735 -14.72955 -14.31501 -14.17952 -13.59588 -13.50293 -13.36043 -13.29425 -13.22529 -13.09296 -12.95414 -12.86957 -12.66909 -12.59921 -12.59329 -12.43173 -12.36365 -12.12548 -11.84724 -11.50135 -11.38069 -11.22182 -10.94813 -10.56692 -10.34590 -10.14499 -10.01977 -9.72677 -9.31625 -8.46665 -5.95660 0.46391 1.39909 1.41694 1.52758 2.05087 2.28960 2.36080 2.38582 2.88732 3.20518 3.48306 3.74354 3.81069 3.84449 3.91808 3.97041 4.16747 4.27854 4.32183 4.34102 4.36813 4.48070 4.51929 4.56824 4.59663 4.60650 4.67734 4.70164 4.70319 4.78444 4.81026 4.91354 4.93177 5.02292 5.06216 5.17208 5.20843 5.23433 5.29239 5.37002 5.40554 5.53306 5.55682 5.58871 5.66174 5.70146 5.88036 6.09292 6.39020 6.59719 6.68957 7.12193 7.37374 7.55941 8.10976 8.70588 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012797 B = 0.002192 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.430040 B =12771.082143 C =14370.857290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.031 4.031 3 C -0.125 4.125 4 C -0.250 4.250 5 C 0.539 3.461 6 O -0.579 6.579 7 N -0.708 5.708 8 C 0.160 3.840 9 H 0.068 0.932 10 C -0.123 4.123 11 C -0.110 4.110 12 C -0.117 4.117 13 C -0.103 4.103 14 C -0.081 4.081 15 H 0.084 0.916 16 C 0.069 3.931 17 N -0.672 5.672 18 C 0.065 3.935 19 C 0.439 3.561 20 O -0.621 6.621 21 N -0.574 5.574 22 C -0.334 4.334 23 H 0.080 0.920 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.148 0.852 37 H 0.408 0.592 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.026 0.974 48 H 0.343 0.657 49 H 0.103 0.897 50 H 0.060 0.940 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.870 16.295 20.810 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.033 4.033 3 C -0.182 4.182 4 C -0.271 4.271 5 C 0.330 3.670 6 O -0.462 6.462 7 N -0.360 5.360 8 C 0.055 3.945 9 H 0.086 0.914 10 C -0.162 4.162 11 C -0.147 4.147 12 C -0.155 4.155 13 C -0.140 4.140 14 C -0.100 4.100 15 H 0.102 0.898 16 C -0.059 4.059 17 N -0.304 5.304 18 C -0.068 4.068 19 C 0.226 3.774 20 O -0.507 6.507 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.098 0.902 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.166 0.834 37 H 0.246 0.754 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.045 0.955 48 H 0.162 0.838 49 H 0.121 0.879 50 H 0.078 0.922 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.809 15.862 21.296 26.826 hybrid contribution -0.420 -0.561 -1.348 1.519 sum -4.229 15.301 19.948 25.494 Atomic orbital electron populations 1.21087 0.91964 1.02335 1.02609 1.22841 0.96466 0.95736 0.88254 1.21060 1.00305 0.92940 1.03848 1.22512 1.01317 0.91149 1.12108 1.18973 0.86616 0.85244 0.76143 1.90736 1.16679 1.88169 1.50631 1.45961 1.13255 1.04855 1.71926 1.20782 0.95469 0.82681 0.95575 0.91359 1.21835 0.98028 1.01563 0.94739 1.21445 0.94914 0.99007 0.99373 1.21545 1.00704 0.98518 0.94691 1.21428 0.95146 1.02014 0.95462 1.21324 0.97753 0.98176 0.92725 0.89809 1.22015 0.96990 0.93867 0.93076 1.60098 1.58080 1.05980 1.06286 1.21520 1.00128 0.96144 0.88984 1.20841 0.83989 0.90086 0.82447 1.90486 1.56691 1.35838 1.67731 1.41941 1.55114 1.17695 1.06374 1.19636 1.38506 0.97197 0.91006 0.90245 1.26054 0.97702 1.00740 0.96861 1.69668 1.47874 1.28940 1.09747 0.84985 0.78651 0.77611 0.77079 1.19686 1.19517 1.19631 0.91681 0.91315 0.90971 0.89375 0.89966 0.89964 0.83442 0.75417 0.90616 0.92885 0.91519 0.91932 0.92083 0.91410 0.91978 0.91708 0.90409 0.95544 0.83849 0.87902 0.92184 0.77037 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 8.47 71.24 0.60 -1.57 16 2 C -0.03 -0.46 6.11 -17.62 -0.11 -0.57 16 3 C -0.13 -1.04 10.01 71.23 0.71 -0.33 16 4 C -0.25 -3.97 9.62 23.43 0.23 -3.74 16 5 C 0.54 11.31 7.58 86.57 0.66 11.96 16 6 O -0.58 -15.99 12.95 -4.07 -0.05 -16.05 16 7 N -0.71 -12.26 3.61 -446.13 -1.61 -13.87 16 8 C 0.16 3.02 2.23 44.99 0.10 3.12 16 9 H 0.07 1.56 7.58 -2.39 -0.02 1.55 16 10 C -0.12 -2.13 5.60 30.60 0.17 -1.96 16 11 C -0.11 -1.63 5.77 30.60 0.18 -1.46 16 12 C -0.12 -1.87 5.92 30.59 0.18 -1.69 16 13 C -0.10 -1.93 4.92 30.60 0.15 -1.77 16 14 C -0.08 -1.55 2.12 -10.79 -0.02 -1.57 16 15 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 16 C 0.07 1.58 4.84 86.30 0.42 2.00 16 17 N -0.67 -20.42 5.58 -517.94 -2.89 -23.31 16 18 C 0.06 2.21 6.17 85.56 0.53 2.74 16 19 C 0.44 20.86 7.82 87.66 0.69 21.54 16 20 O -0.62 -34.23 15.78 -3.04 -0.05 -34.28 16 21 N -0.57 -29.58 5.29 -306.99 -1.62 -31.20 16 22 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 25 N -0.92 -49.93 13.05 21.66 0.28 -49.65 16 26 Si 0.99 42.96 29.55 68.60 2.03 44.98 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 29 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 30 H 0.06 1.50 6.12 -2.39 -0.01 1.48 16 31 H 0.07 1.32 8.05 -2.38 -0.02 1.30 16 32 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.55 8.12 -2.39 -0.02 0.53 16 35 H 0.08 0.53 8.07 -2.39 -0.02 0.51 16 36 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.41 5.70 6.65 -92.71 -0.62 5.08 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 0.92 7.60 -2.38 -0.02 0.90 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 1.51 7.75 -2.39 -0.02 1.49 16 45 H 0.06 1.08 6.50 -2.39 -0.02 1.06 16 46 H 0.08 1.67 7.61 -2.39 -0.02 1.65 16 47 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.34 11.08 8.44 -89.70 -0.76 10.32 16 49 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 50 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 52 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -69.75 412.91 0.67 -69.08 By element: Atomic # 1 Polarization: 47.26 SS G_CDS: -1.17 Total: 46.08 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 5.76 Total: 8.21 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -5.84 Total: -118.03 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -0.10 Total: -50.32 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -69.75 0.67 -69.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268765102.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.536 kcal (2) G-P(sol) polarization free energy of solvation -69.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds