Wall clock time and date at job start Tue Mar 31 2020 20:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46663 * 2 1 4 4 H 1.08995 * 109.47082 * 55.16688 * 3 2 1 5 5 C 1.53001 * 109.46616 * 175.17029 * 3 2 1 6 6 N 1.46503 * 109.46998 * 174.99918 * 5 3 2 7 7 C 1.34773 * 119.99996 * 180.02562 * 6 5 3 8 8 O 1.21273 * 120.00034 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99608 * 179.72287 * 7 6 5 10 10 C 1.53940 * 113.57901 * 279.51315 * 9 7 6 11 11 C 1.53070 * 86.72584 * 220.69245 * 10 9 7 12 12 C 1.52914 * 121.17368 * 150.58684 * 11 10 9 13 13 C 1.53954 * 86.78269 * 100.75312 * 12 11 10 14 14 C 1.52912 * 121.07041 * 259.12193 * 11 10 9 15 15 C 1.52905 * 88.06736 * 24.83705 * 11 10 9 16 16 N 1.46899 * 109.47053 * 295.16649 * 3 2 1 17 17 C 1.46900 * 110.99978 * 297.30145 * 16 3 2 18 18 C 1.50700 * 109.47195 * 179.88419 * 17 16 3 19 19 O 1.21287 * 120.00140 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00339 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00306 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99831 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00280 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00552 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 119.99706 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46777 * 90.00552 * 25 23 21 27 27 H 1.48498 * 109.47298 * 210.00248 * 25 23 21 28 28 H 1.48495 * 109.47410 * 330.00837 * 25 23 21 29 29 H 1.08999 * 109.46866 * 175.55167 * 1 2 3 30 30 H 1.09001 * 109.46993 * 295.54442 * 1 2 3 31 31 H 1.08998 * 109.47302 * 55.55214 * 1 2 3 32 32 H 1.08991 * 109.47089 * 239.99817 * 2 1 3 33 33 H 1.09004 * 109.47134 * 119.99638 * 2 1 3 34 34 H 1.08998 * 109.47280 * 54.99974 * 5 3 2 35 35 H 1.08998 * 109.47154 * 294.99591 * 5 3 2 36 36 H 0.97006 * 119.99407 * 359.97438 * 6 5 3 37 37 H 1.08997 * 112.82493 * 50.61038 * 9 7 6 38 38 H 1.08999 * 113.66588 * 335.14247 * 10 9 7 39 39 H 1.09002 * 113.66066 * 106.19404 * 10 9 7 40 40 H 1.08999 * 113.66350 * 215.22416 * 12 11 10 41 41 H 1.08993 * 113.66369 * 346.28522 * 12 11 10 42 42 H 1.08999 * 113.58121 * 270.13088 * 13 12 11 43 43 H 1.08997 * 113.64930 * 139.34273 * 13 12 11 44 44 H 1.09002 * 113.65836 * 13.63466 * 14 11 10 45 45 H 1.08996 * 113.66032 * 144.68571 * 14 11 10 46 46 H 1.09000 * 113.66174 * 220.69206 * 15 11 10 47 47 H 1.09000 * 113.66670 * 89.64346 * 15 11 10 48 48 H 1.00895 * 111.00315 * 173.35134 * 16 3 2 49 49 H 1.09004 * 109.47575 * 299.88307 * 17 16 3 50 50 H 1.09007 * 109.47554 * 59.88712 * 17 16 3 51 51 H 0.97002 * 119.99883 * 0.02562 * 20 18 17 52 52 H 0.96998 * 120.00642 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6076 1.9808 0.8435 5 6 3.5651 1.4443 0.1215 6 7 4.0630 2.8169 0.0016 7 6 5.3859 3.0630 0.0780 8 8 6.1641 2.1482 0.2464 9 6 5.8985 4.4743 -0.0515 10 6 5.9999 4.9613 -1.5083 11 6 7.3247 5.6138 -1.1055 12 6 8.4546 5.8019 -2.1186 13 6 7.9970 7.2680 -2.2262 14 6 7.4092 7.1121 -0.8119 15 6 7.4327 4.5808 0.0166 16 7 1.6478 2.1005 -1.2535 17 6 2.2655 1.4393 -2.4107 18 6 1.8389 2.1385 -3.6757 19 8 1.0940 3.0940 -3.6188 20 7 2.2859 1.7028 -4.8702 21 6 1.8983 2.3393 -6.0209 22 1 1.2343 3.1895 -5.9702 23 6 2.3587 1.8898 -7.2524 24 7 1.9875 2.5001 -8.3554 25 14 3.5065 0.4186 -7.3400 26 1 2.7068 -0.8265 -7.4639 27 1 4.3965 0.5547 -8.5210 28 1 4.3287 0.3579 -6.1050 29 1 -0.3633 -1.0246 -0.0797 30 1 -0.3633 0.4431 0.9272 31 1 -0.3634 0.5813 -0.8474 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.9935 0.8319 -0.6720 35 1 3.8529 1.0368 1.0906 36 1 3.4405 3.5485 -0.1334 37 1 5.3832 5.1734 0.6072 38 1 6.1119 4.1545 -2.2326 39 1 5.2254 5.6765 -1.7853 40 1 9.4500 5.6847 -1.6904 41 1 8.3174 5.2323 -3.0376 42 1 7.2432 7.4341 -2.9958 43 1 8.8204 7.9801 -2.2801 44 1 6.4370 7.5889 -0.6871 45 1 8.1109 7.3630 -0.0164 46 1 7.8015 4.9924 0.9561 47 1 7.9483 3.6668 -0.2783 48 1 1.8772 3.0829 -1.2335 49 1 3.3507 1.4847 -2.3188 50 1 1.9473 0.3973 -2.4466 51 1 2.8820 0.9389 -4.9157 52 1 2.3092 2.1865 -9.2151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269454824.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:37 Heat of formation + Delta-G solvation = -34.169756 kcal Electronic energy + Delta-G solvation = -30181.873054 eV Core-core repulsion = 26182.459224 eV Total energy + Delta-G solvation = -3999.413830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.06176 -39.55137 -38.59097 -37.38005 -34.78710 -34.14760 -33.92413 -32.06651 -31.63922 -28.97294 -26.94072 -26.02823 -25.97845 -25.53420 -24.09075 -23.31206 -21.76006 -20.48239 -19.84398 -19.28472 -18.42926 -18.17242 -17.45578 -16.79657 -16.14844 -15.87670 -15.55748 -15.39520 -15.12400 -14.92259 -14.65021 -14.29573 -14.12796 -13.70887 -13.39973 -13.19991 -13.15931 -12.99510 -12.85174 -12.65682 -12.48605 -12.29660 -12.20251 -12.04969 -12.02105 -11.65777 -11.42728 -11.22682 -11.16544 -11.08605 -10.92949 -10.67854 -10.58786 -10.50637 -10.30089 -10.23370 -9.99290 -9.68458 -9.58689 -9.22631 -8.63238 -8.23657 -8.18260 -6.32845 -3.84189 2.51865 3.00867 3.02187 3.06286 3.14572 3.71858 4.05914 4.09973 4.15117 4.22329 4.33356 4.44706 4.52875 4.57772 4.64052 4.70774 4.90711 5.01251 5.05197 5.09452 5.20100 5.25258 5.27998 5.41382 5.43850 5.50492 5.52090 5.57274 5.64117 5.65718 5.68256 5.70845 5.76488 5.78452 5.79162 5.80578 5.86946 5.92390 6.00703 6.09966 6.18671 6.20295 6.26060 6.30881 6.47560 6.99907 7.32023 7.45104 7.56114 8.10361 8.12557 8.57738 8.93164 9.40869 9.80629 10.80191 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007000 B = 0.003967 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3998.818425 B = 7056.091785 C = 9907.762513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.076 3.924 4 H 0.090 0.910 5 C 0.079 3.921 6 N -0.728 5.728 7 C 0.525 3.475 8 O -0.541 6.541 9 C -0.136 4.136 10 C -0.098 4.098 11 C -0.106 4.106 12 C -0.128 4.128 13 C -0.140 4.140 14 C -0.116 4.116 15 C -0.101 4.101 16 N -0.652 5.652 17 C 0.040 3.960 18 C 0.451 3.549 19 O -0.566 6.566 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.043 3.957 24 N -0.881 5.881 25 Si 0.877 3.123 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.399 0.601 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.095 0.905 48 H 0.347 0.653 49 H 0.048 0.952 50 H 0.090 0.910 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.417 2.222 19.163 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.035 4.035 4 H 0.108 0.892 5 C -0.047 4.047 6 N -0.381 5.381 7 C 0.311 3.689 8 O -0.418 6.418 9 C -0.157 4.157 10 C -0.135 4.135 11 C -0.107 4.107 12 C -0.165 4.165 13 C -0.178 4.178 14 C -0.154 4.154 15 C -0.139 4.139 16 N -0.284 5.284 17 C -0.093 4.093 18 C 0.236 3.764 19 O -0.448 6.448 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.160 4.160 24 N -0.521 5.521 25 Si 0.703 3.297 26 H -0.195 1.195 27 H -0.201 1.201 28 H -0.196 1.196 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.234 0.766 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.114 0.886 48 H 0.167 0.833 49 H 0.065 0.935 50 H 0.109 0.891 51 H 0.202 0.798 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.868 1.882 19.015 21.065 hybrid contribution 1.522 -0.626 -0.273 1.668 sum 10.390 1.256 18.741 21.466 Atomic orbital electron populations 1.21664 0.94575 1.01253 1.02778 1.21521 0.97396 0.94312 1.02009 1.21979 0.90660 0.97285 0.93559 0.89157 1.22183 0.96450 0.83499 1.02544 1.46023 1.07770 1.09772 1.74532 1.20540 0.81816 0.91151 0.75367 1.90679 1.55899 1.46464 1.48769 1.22751 0.98991 0.93789 1.00176 1.22647 0.96625 1.00187 0.94088 1.22438 0.96240 0.94905 0.97072 1.22745 0.97915 0.96801 0.99086 1.22829 1.00758 0.96869 0.97317 1.22661 1.01354 0.93886 0.97474 1.22684 0.93170 0.99519 0.98487 1.60240 1.61475 1.06822 0.99877 1.21824 0.97045 0.99657 0.90752 1.19682 0.85480 0.87175 0.84026 1.90559 1.38477 1.29329 1.86403 1.42209 1.44358 1.29992 1.06351 1.19417 1.28128 1.14035 0.81778 0.86273 1.25019 0.97903 0.97988 0.95080 1.69613 1.44290 1.40329 0.97830 0.86712 0.81223 0.83259 0.78461 1.19543 1.20141 1.19553 0.93387 0.93268 0.90674 0.91515 0.91767 0.91089 0.91204 0.76550 0.87042 0.89170 0.90108 0.90000 0.91182 0.89973 0.91586 0.91232 0.89896 0.91084 0.88616 0.83314 0.93458 0.89150 0.79756 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.85 37.16 0.37 -1.17 16 2 C -0.11 -1.13 5.25 -26.72 -0.14 -1.27 16 3 C 0.08 0.79 2.72 -67.71 -0.18 0.60 16 4 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 5 C 0.08 0.86 4.56 -4.04 -0.02 0.84 16 6 N -0.73 -7.83 5.36 -60.29 -0.32 -8.15 16 7 C 0.52 6.53 7.35 -10.98 -0.08 6.45 16 8 O -0.54 -8.70 15.90 5.56 0.09 -8.61 16 9 C -0.14 -1.34 4.14 -90.79 -0.38 -1.72 16 10 C -0.10 -1.02 7.40 -26.21 -0.19 -1.22 16 11 C -0.11 -0.99 1.11 -154.63 -0.17 -1.16 16 12 C -0.13 -1.18 7.84 -26.28 -0.21 -1.39 16 13 C -0.14 -1.19 8.08 -25.75 -0.21 -1.40 16 14 C -0.12 -0.93 7.84 -26.28 -0.21 -1.14 16 15 C -0.10 -1.00 7.16 -26.29 -0.19 -1.19 16 16 N -0.65 -8.89 5.36 -107.99 -0.58 -9.47 16 17 C 0.04 0.63 5.38 -4.98 -0.03 0.60 16 18 C 0.45 9.91 7.82 -10.99 -0.09 9.82 16 19 O -0.57 -14.59 15.78 5.55 0.09 -14.50 16 20 N -0.59 -13.89 5.09 -10.97 -0.06 -13.94 16 21 C -0.30 -8.54 10.16 -14.93 -0.15 -8.69 16 22 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 23 C 0.04 1.18 5.50 -17.47 -0.10 1.08 16 24 N -0.88 -25.59 13.96 55.50 0.77 -24.81 16 25 Si 0.88 19.46 27.74 -169.99 -4.71 14.75 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 28 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.98 7.63 -51.93 -0.40 0.59 16 32 H 0.07 0.71 6.23 -51.93 -0.32 0.39 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.89 6.66 -51.93 -0.35 0.55 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 3.69 7.19 -40.82 -0.29 3.40 16 37 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.10 1.13 7.44 -51.93 -0.39 0.74 16 48 H 0.35 4.79 7.07 -39.29 -0.28 4.51 16 49 H 0.05 0.72 6.37 -51.93 -0.33 0.38 16 50 H 0.09 1.32 6.26 -51.93 -0.33 1.00 16 51 H 0.37 7.79 5.76 -40.82 -0.24 7.55 16 52 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 410.47 15.07 6.19 6.19 Total: -1.00 -33.14 410.47 -9.31 -42.46 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -8.81 Total: 17.05 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.97 Total: -0.94 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.18 Total: -56.38 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.18 Total: -23.11 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.14 -9.31 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269454824.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.286 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds