Wall clock time and date at job start Tue Mar 31 2020 20:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46663 * 2 1 4 4 H 1.08995 * 109.47082 * 55.16688 * 3 2 1 5 5 C 1.53001 * 109.46616 * 175.17029 * 3 2 1 6 6 N 1.46503 * 109.46998 * 174.99918 * 5 3 2 7 7 C 1.34773 * 119.99996 * 180.02562 * 6 5 3 8 8 O 1.21273 * 120.00034 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99608 * 179.72287 * 7 6 5 10 10 C 1.53940 * 113.57901 * 279.51315 * 9 7 6 11 11 C 1.53070 * 86.72584 * 220.69245 * 10 9 7 12 12 C 1.52914 * 121.17368 * 150.58684 * 11 10 9 13 13 C 1.53954 * 86.78269 * 100.75312 * 12 11 10 14 14 C 1.52912 * 121.07041 * 259.12193 * 11 10 9 15 15 C 1.52905 * 88.06736 * 24.83705 * 11 10 9 16 16 N 1.46899 * 109.47053 * 295.16649 * 3 2 1 17 17 C 1.46900 * 110.99978 * 297.30145 * 16 3 2 18 18 C 1.50700 * 109.47195 * 179.88419 * 17 16 3 19 19 O 1.21287 * 120.00140 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00339 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00306 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99831 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00280 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00552 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 119.99706 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46777 * 90.00552 * 25 23 21 27 27 H 1.48498 * 109.47298 * 210.00248 * 25 23 21 28 28 H 1.48495 * 109.47410 * 330.00837 * 25 23 21 29 29 H 1.08999 * 109.46866 * 175.55167 * 1 2 3 30 30 H 1.09001 * 109.46993 * 295.54442 * 1 2 3 31 31 H 1.08998 * 109.47302 * 55.55214 * 1 2 3 32 32 H 1.08991 * 109.47089 * 239.99817 * 2 1 3 33 33 H 1.09004 * 109.47134 * 119.99638 * 2 1 3 34 34 H 1.08998 * 109.47280 * 54.99974 * 5 3 2 35 35 H 1.08998 * 109.47154 * 294.99591 * 5 3 2 36 36 H 0.97006 * 119.99407 * 359.97438 * 6 5 3 37 37 H 1.08997 * 112.82493 * 50.61038 * 9 7 6 38 38 H 1.08999 * 113.66588 * 335.14247 * 10 9 7 39 39 H 1.09002 * 113.66066 * 106.19404 * 10 9 7 40 40 H 1.08999 * 113.66350 * 215.22416 * 12 11 10 41 41 H 1.08993 * 113.66369 * 346.28522 * 12 11 10 42 42 H 1.08999 * 113.58121 * 270.13088 * 13 12 11 43 43 H 1.08997 * 113.64930 * 139.34273 * 13 12 11 44 44 H 1.09002 * 113.65836 * 13.63466 * 14 11 10 45 45 H 1.08996 * 113.66032 * 144.68571 * 14 11 10 46 46 H 1.09000 * 113.66174 * 220.69206 * 15 11 10 47 47 H 1.09000 * 113.66670 * 89.64346 * 15 11 10 48 48 H 1.00895 * 111.00315 * 173.35134 * 16 3 2 49 49 H 1.09004 * 109.47575 * 299.88307 * 17 16 3 50 50 H 1.09007 * 109.47554 * 59.88712 * 17 16 3 51 51 H 0.97002 * 119.99883 * 0.02562 * 20 18 17 52 52 H 0.96998 * 120.00642 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6076 1.9808 0.8435 5 6 3.5651 1.4443 0.1215 6 7 4.0630 2.8169 0.0016 7 6 5.3859 3.0630 0.0780 8 8 6.1641 2.1482 0.2464 9 6 5.8985 4.4743 -0.0515 10 6 5.9999 4.9613 -1.5083 11 6 7.3247 5.6138 -1.1055 12 6 8.4546 5.8019 -2.1186 13 6 7.9970 7.2680 -2.2262 14 6 7.4092 7.1121 -0.8119 15 6 7.4327 4.5808 0.0166 16 7 1.6478 2.1005 -1.2535 17 6 2.2655 1.4393 -2.4107 18 6 1.8389 2.1385 -3.6757 19 8 1.0940 3.0940 -3.6188 20 7 2.2859 1.7028 -4.8702 21 6 1.8983 2.3393 -6.0209 22 1 1.2343 3.1895 -5.9702 23 6 2.3587 1.8898 -7.2524 24 7 1.9875 2.5001 -8.3554 25 14 3.5065 0.4186 -7.3400 26 1 2.7068 -0.8265 -7.4639 27 1 4.3965 0.5547 -8.5210 28 1 4.3287 0.3579 -6.1050 29 1 -0.3633 -1.0246 -0.0797 30 1 -0.3633 0.4431 0.9272 31 1 -0.3634 0.5813 -0.8474 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.9935 0.8319 -0.6720 35 1 3.8529 1.0368 1.0906 36 1 3.4405 3.5485 -0.1334 37 1 5.3832 5.1734 0.6072 38 1 6.1119 4.1545 -2.2326 39 1 5.2254 5.6765 -1.7853 40 1 9.4500 5.6847 -1.6904 41 1 8.3174 5.2323 -3.0376 42 1 7.2432 7.4341 -2.9958 43 1 8.8204 7.9801 -2.2801 44 1 6.4370 7.5889 -0.6871 45 1 8.1109 7.3630 -0.0164 46 1 7.8015 4.9924 0.9561 47 1 7.9483 3.6668 -0.2783 48 1 1.8772 3.0829 -1.2335 49 1 3.3507 1.4847 -2.3188 50 1 1.9473 0.3973 -2.4466 51 1 2.8820 0.9389 -4.9157 52 1 2.3092 2.1865 -9.2151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269454824.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:35 Heat of formation + Delta-G solvation = -58.008294 kcal Electronic energy + Delta-G solvation = -30182.906770 eV Core-core repulsion = 26182.459224 eV Total energy + Delta-G solvation = -4000.447546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.89638 -40.67947 -40.00109 -38.60954 -36.02295 -35.57696 -35.01383 -33.77036 -33.08057 -29.99971 -28.33638 -26.86550 -26.70888 -26.43744 -25.77495 -24.13473 -22.55511 -21.70980 -21.10800 -20.69773 -20.11549 -18.93331 -18.43342 -18.16808 -17.14910 -17.10523 -16.74462 -16.55653 -16.17697 -16.10517 -15.78270 -15.53098 -15.38891 -15.04059 -14.65960 -14.43261 -14.29305 -14.08948 -14.03229 -13.75910 -13.65524 -13.50633 -13.19424 -13.04761 -12.95299 -12.93556 -12.65733 -12.44523 -12.30174 -12.01881 -11.96571 -11.84996 -11.76705 -11.54306 -11.51034 -11.29046 -11.03759 -11.02335 -10.57488 -10.44607 -10.25753 -10.16647 -9.39015 -8.42984 -6.02842 1.27287 1.31331 1.39681 1.55215 1.93347 2.12541 2.19418 2.72039 3.13350 3.37586 3.39131 3.45954 3.55410 3.65122 3.70917 3.81009 3.95003 3.99198 4.09050 4.16024 4.25125 4.33616 4.37102 4.41136 4.53144 4.54464 4.67360 4.68989 4.71003 4.76041 4.84030 4.89071 4.94452 4.97583 4.99683 5.02080 5.07494 5.09664 5.20421 5.29485 5.35993 5.39494 5.50205 5.52602 5.56371 5.60071 5.88372 6.00119 6.34386 6.44152 6.57548 6.86669 7.17069 7.38202 7.93559 8.74448 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007000 B = 0.003967 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3998.818425 B = 7056.091785 C = 9907.762513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C 0.087 3.913 4 H 0.110 0.890 5 C 0.083 3.917 6 N -0.721 5.721 7 C 0.521 3.479 8 O -0.581 6.581 9 C -0.127 4.127 10 C -0.103 4.103 11 C -0.104 4.104 12 C -0.135 4.135 13 C -0.141 4.141 14 C -0.107 4.107 15 C -0.100 4.100 16 N -0.661 5.661 17 C 0.059 3.941 18 C 0.452 3.548 19 O -0.607 6.607 20 N -0.593 5.593 21 C -0.325 4.325 22 H 0.060 0.940 23 C -0.010 4.010 24 N -0.932 5.932 25 Si 0.956 3.044 26 H -0.256 1.256 27 H -0.274 1.274 28 H -0.239 1.239 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.408 0.592 37 H 0.139 0.861 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.072 0.928 48 H 0.345 0.655 49 H 0.062 0.938 50 H 0.111 0.889 51 H 0.386 0.614 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.798 1.008 21.687 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.023 4.023 4 H 0.128 0.872 5 C -0.043 4.043 6 N -0.373 5.373 7 C 0.308 3.692 8 O -0.461 6.461 9 C -0.148 4.148 10 C -0.141 4.141 11 C -0.104 4.104 12 C -0.172 4.172 13 C -0.178 4.178 14 C -0.144 4.144 15 C -0.138 4.138 16 N -0.294 5.294 17 C -0.074 4.074 18 C 0.240 3.760 19 O -0.491 6.491 20 N -0.235 5.235 21 C -0.454 4.454 22 H 0.078 0.922 23 C -0.209 4.209 24 N -0.572 5.572 25 Si 0.777 3.223 26 H -0.180 1.180 27 H -0.199 1.199 28 H -0.163 1.163 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.245 0.755 37 H 0.157 0.843 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.105 0.895 47 H 0.091 0.909 48 H 0.165 0.835 49 H 0.080 0.920 50 H 0.129 0.871 51 H 0.221 0.779 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.224 0.672 21.568 23.878 hybrid contribution 0.982 -0.166 -1.019 1.424 sum 11.206 0.506 20.550 23.412 Atomic orbital electron populations 1.21617 0.95038 1.01290 1.02033 1.21557 0.96858 0.93888 1.02913 1.22028 0.90353 0.97706 0.92248 0.87203 1.22153 0.96417 0.83283 1.02443 1.46009 1.07536 1.10193 1.73570 1.20970 0.81923 0.91715 0.74553 1.90661 1.56883 1.47770 1.50764 1.22818 0.99178 0.92806 1.00023 1.22605 0.97734 0.99717 0.94019 1.22440 0.95389 0.95840 0.96753 1.22812 0.98513 0.97340 0.98524 1.22823 1.00948 0.96442 0.97608 1.22663 1.02047 0.92249 0.97415 1.22625 0.93030 0.98764 0.99368 1.60244 1.61731 1.06906 1.00489 1.21649 0.97764 0.99780 0.88187 1.20859 0.83575 0.86235 0.85350 1.90539 1.40003 1.31255 1.87317 1.42069 1.45208 1.30559 1.05625 1.19004 1.28571 1.13609 0.84254 0.92215 1.25986 0.99508 1.01541 0.93837 1.69782 1.46004 1.42664 0.98779 0.85482 0.78739 0.78363 0.79707 1.18010 1.19916 1.16302 0.92650 0.92150 0.93609 0.92082 0.89429 0.92510 0.90401 0.75549 0.84295 0.91677 0.89790 0.89039 0.92793 0.90946 0.90390 0.90604 0.88320 0.89462 0.90931 0.83508 0.92041 0.87093 0.77893 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.85 71.98 0.71 -1.96 16 2 C -0.11 -1.92 5.25 30.60 0.16 -1.76 16 3 C 0.09 1.55 2.72 44.92 0.12 1.68 16 4 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 5 C 0.08 1.60 4.56 86.38 0.39 1.99 16 6 N -0.72 -14.18 5.36 -463.06 -2.48 -16.66 16 7 C 0.52 12.34 7.35 87.66 0.64 12.98 16 8 O -0.58 -18.31 15.90 -3.01 -0.05 -18.36 16 9 C -0.13 -2.33 4.14 -10.91 -0.05 -2.38 16 10 C -0.10 -2.11 7.40 30.93 0.23 -1.88 16 11 C -0.10 -1.83 1.11 -52.26 -0.06 -1.88 16 12 C -0.13 -2.41 7.84 30.89 0.24 -2.17 16 13 C -0.14 -2.21 8.08 31.23 0.25 -1.96 16 14 C -0.11 -1.47 7.84 30.89 0.24 -1.22 16 15 C -0.10 -1.87 7.16 30.88 0.22 -1.65 16 16 N -0.66 -17.00 5.36 -495.56 -2.65 -19.66 16 17 C 0.06 1.76 5.38 85.56 0.46 2.22 16 18 C 0.45 19.98 7.82 87.66 0.69 20.66 16 19 O -0.61 -32.31 15.78 -3.05 -0.05 -32.36 16 20 N -0.59 -28.04 5.09 -306.99 -1.56 -29.60 16 21 C -0.33 -18.95 10.16 84.04 0.85 -18.10 16 22 H 0.06 4.11 7.39 -2.91 -0.02 4.09 16 23 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 24 N -0.93 -56.02 13.96 21.66 0.30 -55.72 16 25 Si 0.96 39.56 27.74 68.60 1.90 41.46 16 26 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.24 -8.63 6.52 99.48 0.65 -7.98 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.04 1.14 7.63 -2.39 -0.02 1.12 16 32 H 0.06 1.11 6.23 -2.39 -0.01 1.10 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.30 6.66 -2.39 -0.02 1.28 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 36 H 0.41 6.74 7.19 -92.70 -0.67 6.07 16 37 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.65 8.09 -2.39 -0.02 1.64 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 45 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.07 1.72 7.44 -2.39 -0.02 1.70 16 48 H 0.35 9.12 7.07 -89.70 -0.63 8.49 16 49 H 0.06 1.73 6.37 -2.39 -0.02 1.71 16 50 H 0.11 2.97 6.26 -2.38 -0.01 2.95 16 51 H 0.39 15.59 5.76 -92.71 -0.53 15.05 16 52 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -76.89 410.47 0.04 -76.85 By element: Atomic # 1 Polarization: 50.51 SS G_CDS: -0.95 Total: 49.55 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 5.58 Total: 4.50 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -6.40 Total: -121.64 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -0.10 Total: -50.71 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 1.90 Total: 41.46 kcal Total: -76.89 0.04 -76.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269454824.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.841 kcal (2) G-P(sol) polarization free energy of solvation -76.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds