Wall clock time and date at job start Tue Mar 31 2020 20:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47351 * 2 1 4 4 H 1.09005 * 109.47013 * 304.99791 * 3 2 1 5 5 C 1.52998 * 109.47461 * 64.99598 * 3 2 1 6 6 C 1.50702 * 109.47643 * 184.99996 * 3 2 1 7 7 O 1.21286 * 119.99496 * 359.97438 * 6 3 2 8 8 N 1.34773 * 120.00490 * 179.97438 * 6 3 2 9 9 C 1.47558 * 125.67266 * 0.03906 * 8 6 3 10 10 C 1.55178 * 105.00386 * 203.82926 * 9 8 6 11 11 C 1.53669 * 101.42291 * 324.49939 * 10 9 8 12 12 C 1.53640 * 111.40513 * 155.00950 * 11 10 9 13 13 C 1.55181 * 101.49482 * 87.11881 * 12 11 10 14 14 N 1.47975 * 104.96857 * 35.55925 * 13 12 11 15 15 C 1.46906 * 110.99920 * 213.93767 * 14 13 12 16 16 C 1.50699 * 109.47140 * 290.78019 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00466 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46948 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46809 * 120.00147 * 23 21 19 26 26 H 1.48497 * 109.47378 * 239.99941 * 23 21 19 27 27 C 1.47818 * 108.51950 * 336.17101 * 14 13 12 28 28 C 1.47406 * 125.67485 * 179.97438 * 8 6 3 29 29 H 1.08997 * 109.47323 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47524 * 300.00498 * 1 2 3 31 31 H 1.09010 * 109.46648 * 60.00016 * 1 2 3 32 32 H 1.08996 * 109.47524 * 239.99502 * 2 1 3 33 33 H 1.08999 * 109.46553 * 119.99525 * 2 1 3 34 34 H 1.09005 * 109.47632 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47330 * 300.00097 * 5 3 2 36 36 H 1.09003 * 109.47338 * 60.00266 * 5 3 2 37 37 H 1.08994 * 110.33639 * 322.71318 * 9 8 6 38 38 H 1.09002 * 110.33605 * 84.84384 * 9 8 6 39 39 H 1.08998 * 111.03526 * 206.46201 * 10 9 8 40 40 H 1.09001 * 111.03558 * 82.53458 * 10 9 8 41 41 H 1.09000 * 111.02257 * 205.17162 * 12 11 10 42 42 H 1.09001 * 111.02307 * 329.02742 * 12 11 10 43 43 H 1.09002 * 110.34043 * 276.68365 * 13 12 11 44 44 H 1.08995 * 110.34205 * 154.43054 * 13 12 11 45 45 H 1.09004 * 109.47040 * 50.77957 * 15 14 13 46 46 H 1.09000 * 109.47033 * 170.77909 * 15 14 13 47 47 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 48 48 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 49 49 H 1.09007 * 109.99305 * 121.37027 * 27 14 13 50 50 H 1.08999 * 110.00113 * 242.65518 * 27 14 13 51 51 H 1.08998 * 109.97812 * 58.57720 * 28 8 6 52 52 H 1.09003 * 110.01733 * 297.29523 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5420 1.4443 -0.1238 7 8 4.1451 0.3951 -0.2037 8 7 4.2149 2.6118 -0.1458 9 6 3.6108 3.9551 -0.0566 10 6 4.6420 4.9044 -0.7226 11 6 5.9697 4.2586 -0.2964 12 6 7.1002 4.6000 -1.2792 13 6 7.6168 5.9444 -0.7014 14 7 7.4899 5.8036 0.7661 15 6 7.1539 7.0898 1.3913 16 6 8.3342 8.0213 1.2897 17 8 9.3547 7.6503 0.7493 18 7 8.2557 9.2665 1.7994 19 6 9.3293 10.1140 1.7066 20 1 10.2380 9.7838 1.2254 21 6 9.2484 11.3979 2.2316 22 7 8.1425 11.8000 2.8167 23 14 10.7114 12.5525 2.1057 24 1 11.8263 11.8644 1.4064 25 1 10.3212 13.7644 1.3413 26 1 11.1496 12.9468 3.4686 27 6 6.4540 4.7888 1.0526 28 6 5.6770 2.7592 -0.2616 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 1.9982 3.1544 1.3071 35 1 0.5489 2.1254 1.3968 36 1 2.0698 1.5876 2.1492 37 1 2.6657 3.9821 -0.5988 38 1 3.4565 4.2325 0.9862 39 1 4.5544 5.9163 -0.3272 40 1 4.5349 4.8993 -1.8073 41 1 7.8805 3.8393 -1.2571 42 1 6.7134 4.7310 -2.2899 43 1 7.0019 6.7710 -1.0574 44 1 8.6594 6.1001 -0.9783 45 1 6.2984 7.5302 0.8791 46 1 6.9064 6.9301 2.4407 47 1 7.4395 9.5632 2.2313 48 1 8.0861 12.6962 3.1835 49 1 6.8808 3.9763 1.6408 50 1 5.6250 5.2447 1.5939 51 1 6.0269 2.2900 -1.1812 52 1 6.1673 2.3035 0.5987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269720382.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:15 Heat of formation + Delta-G solvation = -71.189983 kcal Electronic energy + Delta-G solvation = -29906.339879 eV Core-core repulsion = 25905.320732 eV Total energy + Delta-G solvation = -4001.019147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02355 -39.52569 -38.07760 -36.33634 -35.75863 -33.91375 -32.55728 -31.22311 -30.35881 -30.21858 -28.97937 -27.41439 -25.97855 -24.97338 -24.04530 -23.20787 -21.52660 -21.23289 -19.63409 -19.34049 -19.06215 -17.86506 -17.26786 -16.26254 -16.14326 -16.02471 -15.51451 -15.26977 -14.95890 -14.47615 -14.35065 -14.34095 -13.98878 -13.81396 -13.72049 -13.26937 -13.10534 -12.97629 -12.80646 -12.55928 -12.50266 -12.41780 -12.23816 -12.04566 -11.80032 -11.71557 -11.65142 -11.47109 -11.21345 -11.18770 -11.05172 -10.98409 -10.91423 -10.79756 -10.52175 -10.34244 -10.22186 -9.93402 -9.50189 -8.91330 -8.44574 -7.96731 -7.86611 -6.41591 -3.82110 2.39668 2.67836 3.16174 3.26722 3.33973 3.91519 3.97521 4.00726 4.18493 4.24143 4.31545 4.34207 4.43574 4.53746 4.79013 4.86769 4.90567 4.96067 5.00767 5.09990 5.10812 5.17047 5.19857 5.24221 5.34376 5.36897 5.42473 5.48011 5.50087 5.57459 5.57667 5.60980 5.64095 5.69578 5.74454 5.77828 5.86050 5.87742 5.93812 5.94182 6.00766 6.03864 6.19258 6.29169 6.46577 7.22970 7.24582 7.25702 7.55677 7.91809 8.07151 8.62656 9.19061 9.55351 10.07497 10.76367 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027846 B = 0.001992 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.295634 B =14053.220940 C =14679.972433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.106 4.106 4 H 0.095 0.905 5 C -0.153 4.153 6 C 0.531 3.469 7 O -0.541 6.541 8 N -0.618 5.618 9 C 0.099 3.901 10 C -0.122 4.122 11 C -0.093 4.093 12 C -0.115 4.115 13 C 0.055 3.945 14 N -0.504 5.504 15 C 0.041 3.959 16 C 0.445 3.555 17 O -0.576 6.576 18 N -0.567 5.567 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.057 3.943 28 C 0.125 3.875 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.042 0.958 44 H 0.094 0.906 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.079 0.921 50 H 0.056 0.944 51 H 0.072 0.928 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.748 -17.061 -5.627 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.128 4.128 4 H 0.113 0.887 5 C -0.211 4.211 6 C 0.320 3.680 7 O -0.418 6.418 8 N -0.352 5.352 9 C -0.023 4.023 10 C -0.160 4.160 11 C -0.094 4.094 12 C -0.153 4.153 13 C -0.072 4.072 14 N -0.228 5.228 15 C -0.090 4.090 16 C 0.230 3.770 17 O -0.460 6.460 18 N -0.204 5.204 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.071 4.071 28 C 0.003 3.997 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.113 0.887 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.074 0.926 51 H 0.090 0.910 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.329 -17.921 -5.721 24.910 hybrid contribution -0.653 1.325 0.028 1.477 sum -16.982 -16.595 -5.693 24.417 Atomic orbital electron populations 1.21843 0.95395 1.01944 1.01885 1.21344 0.95384 0.94092 1.03508 1.21308 0.91448 0.99405 1.00598 0.88708 1.21979 1.02368 1.00949 0.95774 1.20420 0.89766 0.82059 0.75783 1.90707 1.70381 1.30707 1.50014 1.48662 1.07834 1.05830 1.72911 1.22529 0.97037 0.81821 1.00958 1.22745 0.93093 0.98810 1.01304 1.21807 0.95874 0.94174 0.97585 1.22617 0.96664 0.98530 0.97532 1.23076 1.02764 0.94934 0.86463 1.63411 1.42626 1.06471 1.10261 1.22111 0.96580 0.90169 1.00169 1.19746 0.89430 0.83070 0.84769 1.90511 1.31948 1.75857 1.47647 1.41868 1.15997 1.10946 1.51596 1.19743 0.94651 0.93000 1.35228 0.87894 1.25251 0.98134 0.97839 0.96805 1.69620 1.26371 1.19773 1.38720 0.85811 0.81007 0.79661 0.77936 1.19231 1.20821 1.20770 1.22768 0.93425 0.96062 0.94807 1.21799 0.80357 0.95083 1.02484 0.92429 0.92377 0.92728 0.91185 0.91289 0.91505 0.91136 0.92045 0.90424 0.90789 0.89539 0.90108 0.90245 0.90674 0.93971 0.88743 0.93489 0.89511 0.77580 0.91986 0.90254 0.92559 0.91016 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.67 37.16 0.36 -0.48 16 2 C -0.11 -0.81 4.75 -26.73 -0.13 -0.94 16 3 C -0.11 -0.80 2.08 -91.77 -0.19 -0.99 16 4 H 0.09 0.58 7.85 -51.93 -0.41 0.17 16 5 C -0.15 -0.93 8.76 37.16 0.33 -0.60 16 6 C 0.53 5.80 7.22 -10.99 -0.08 5.72 16 7 O -0.54 -8.03 16.25 5.55 0.09 -7.94 16 8 N -0.62 -5.96 3.34 -170.86 -0.57 -6.53 16 9 C 0.10 0.71 5.11 -2.31 -0.01 0.69 16 10 C -0.12 -0.98 5.85 -25.23 -0.15 -1.13 16 11 C -0.09 -0.93 0.61 -154.02 -0.09 -1.02 16 12 C -0.12 -1.27 5.92 -25.24 -0.15 -1.42 16 13 C 0.05 0.82 5.69 -2.08 -0.01 0.81 16 14 N -0.50 -8.01 4.88 -233.03 -1.14 -9.15 16 15 C 0.04 0.71 5.06 -4.97 -0.03 0.69 16 16 C 0.44 10.33 7.58 -10.99 -0.08 10.25 16 17 O -0.58 -15.40 14.62 5.55 0.08 -15.31 16 18 N -0.57 -14.18 5.29 -10.97 -0.06 -14.24 16 19 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 22 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 23 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.06 0.68 6.00 -3.41 -0.02 0.66 16 28 C 0.13 1.30 6.13 -3.64 -0.02 1.28 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.28 6.56 -51.93 -0.34 -0.06 16 31 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.07 0.62 7.95 -51.93 -0.41 0.21 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.37 4.99 -51.93 -0.26 0.11 16 35 H 0.07 0.33 6.57 -51.93 -0.34 -0.01 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.42 7.38 -51.93 -0.38 0.04 16 38 H 0.07 0.48 7.05 -51.93 -0.37 0.12 16 39 H 0.09 0.71 7.94 -51.93 -0.41 0.30 16 40 H 0.08 0.61 7.82 -51.93 -0.41 0.21 16 41 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.07 0.72 7.78 -51.93 -0.40 0.31 16 43 H 0.04 0.63 7.62 -51.93 -0.40 0.23 16 44 H 0.09 1.69 7.39 -51.93 -0.38 1.31 16 45 H 0.05 0.72 7.85 -51.93 -0.41 0.31 16 46 H 0.09 1.36 8.05 -51.93 -0.42 0.95 16 47 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.08 0.97 7.44 -51.93 -0.39 0.58 16 50 H 0.06 0.60 7.21 -51.93 -0.37 0.23 16 51 H 0.07 0.78 7.86 -51.93 -0.41 0.37 16 52 H 0.07 0.83 7.41 -51.93 -0.39 0.44 16 LS Contribution 400.65 15.07 6.04 6.04 Total: -1.00 -33.02 400.65 -9.21 -42.23 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -8.84 Total: 7.00 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -0.52 Total: 5.63 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -1.04 Total: -53.58 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.17 Total: -23.25 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.02 -9.21 -42.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269720382.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.956 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds