Wall clock time and date at job start Tue Mar 31 2020 20:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47351 * 2 1 4 4 H 1.09005 * 109.47013 * 304.99791 * 3 2 1 5 5 C 1.52998 * 109.47461 * 64.99598 * 3 2 1 6 6 C 1.50702 * 109.47643 * 184.99996 * 3 2 1 7 7 O 1.21286 * 119.99496 * 359.97438 * 6 3 2 8 8 N 1.34773 * 120.00490 * 179.97438 * 6 3 2 9 9 C 1.47558 * 125.67266 * 0.03906 * 8 6 3 10 10 C 1.55178 * 105.00386 * 203.82926 * 9 8 6 11 11 C 1.53669 * 101.42291 * 324.49939 * 10 9 8 12 12 C 1.53640 * 111.40513 * 155.00950 * 11 10 9 13 13 C 1.55181 * 101.49482 * 87.11881 * 12 11 10 14 14 N 1.47975 * 104.96857 * 35.55925 * 13 12 11 15 15 C 1.46906 * 110.99920 * 213.93767 * 14 13 12 16 16 C 1.50699 * 109.47140 * 290.78019 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00466 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46948 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46809 * 120.00147 * 23 21 19 26 26 H 1.48497 * 109.47378 * 239.99941 * 23 21 19 27 27 C 1.47818 * 108.51950 * 336.17101 * 14 13 12 28 28 C 1.47406 * 125.67485 * 179.97438 * 8 6 3 29 29 H 1.08997 * 109.47323 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47524 * 300.00498 * 1 2 3 31 31 H 1.09010 * 109.46648 * 60.00016 * 1 2 3 32 32 H 1.08996 * 109.47524 * 239.99502 * 2 1 3 33 33 H 1.08999 * 109.46553 * 119.99525 * 2 1 3 34 34 H 1.09005 * 109.47632 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47330 * 300.00097 * 5 3 2 36 36 H 1.09003 * 109.47338 * 60.00266 * 5 3 2 37 37 H 1.08994 * 110.33639 * 322.71318 * 9 8 6 38 38 H 1.09002 * 110.33605 * 84.84384 * 9 8 6 39 39 H 1.08998 * 111.03526 * 206.46201 * 10 9 8 40 40 H 1.09001 * 111.03558 * 82.53458 * 10 9 8 41 41 H 1.09000 * 111.02257 * 205.17162 * 12 11 10 42 42 H 1.09001 * 111.02307 * 329.02742 * 12 11 10 43 43 H 1.09002 * 110.34043 * 276.68365 * 13 12 11 44 44 H 1.08995 * 110.34205 * 154.43054 * 13 12 11 45 45 H 1.09004 * 109.47040 * 50.77957 * 15 14 13 46 46 H 1.09000 * 109.47033 * 170.77909 * 15 14 13 47 47 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 48 48 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 49 49 H 1.09007 * 109.99305 * 121.37027 * 27 14 13 50 50 H 1.08999 * 110.00113 * 242.65518 * 27 14 13 51 51 H 1.08998 * 109.97812 * 58.57720 * 28 8 6 52 52 H 1.09003 * 110.01733 * 297.29523 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5420 1.4443 -0.1238 7 8 4.1451 0.3951 -0.2037 8 7 4.2149 2.6118 -0.1458 9 6 3.6108 3.9551 -0.0566 10 6 4.6420 4.9044 -0.7226 11 6 5.9697 4.2586 -0.2964 12 6 7.1002 4.6000 -1.2792 13 6 7.6168 5.9444 -0.7014 14 7 7.4899 5.8036 0.7661 15 6 7.1539 7.0898 1.3913 16 6 8.3342 8.0213 1.2897 17 8 9.3547 7.6503 0.7493 18 7 8.2557 9.2665 1.7994 19 6 9.3293 10.1140 1.7066 20 1 10.2380 9.7838 1.2254 21 6 9.2484 11.3979 2.2316 22 7 8.1425 11.8000 2.8167 23 14 10.7114 12.5525 2.1057 24 1 11.8263 11.8644 1.4064 25 1 10.3212 13.7644 1.3413 26 1 11.1496 12.9468 3.4686 27 6 6.4540 4.7888 1.0526 28 6 5.6770 2.7592 -0.2616 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 1.9982 3.1544 1.3071 35 1 0.5489 2.1254 1.3968 36 1 2.0698 1.5876 2.1492 37 1 2.6657 3.9821 -0.5988 38 1 3.4565 4.2325 0.9862 39 1 4.5544 5.9163 -0.3272 40 1 4.5349 4.8993 -1.8073 41 1 7.8805 3.8393 -1.2571 42 1 6.7134 4.7310 -2.2899 43 1 7.0019 6.7710 -1.0574 44 1 8.6594 6.1001 -0.9783 45 1 6.2984 7.5302 0.8791 46 1 6.9064 6.9301 2.4407 47 1 7.4395 9.5632 2.2313 48 1 8.0861 12.6962 3.1835 49 1 6.8808 3.9763 1.6408 50 1 5.6250 5.2447 1.5939 51 1 6.0269 2.2900 -1.1812 52 1 6.1673 2.3035 0.5987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269720382.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:14 Heat of formation + Delta-G solvation = -94.240926 kcal Electronic energy + Delta-G solvation = -29907.339443 eV Core-core repulsion = 25905.320732 eV Total energy + Delta-G solvation = -4002.018711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.87491 -40.59325 -39.69278 -37.41071 -36.41197 -35.88485 -33.65694 -33.17077 -31.23985 -30.81757 -29.82701 -28.76486 -26.86575 -26.27612 -25.17390 -23.98115 -22.47119 -22.12735 -20.97563 -20.42128 -19.99674 -19.82542 -18.04987 -17.75875 -16.99620 -16.83567 -16.78460 -16.38130 -16.09063 -15.98430 -15.74641 -15.55319 -15.13628 -14.68247 -14.41866 -14.31413 -14.29838 -13.96784 -13.70539 -13.59914 -13.44788 -13.39530 -13.26812 -12.99295 -12.91402 -12.72176 -12.59858 -12.54092 -12.39864 -12.35531 -12.27922 -12.11069 -11.86584 -11.74375 -11.59931 -11.58519 -11.49326 -11.39708 -10.76233 -10.27703 -9.98204 -9.69889 -9.14980 -8.45193 -5.93188 1.36958 1.42233 1.56023 1.59737 1.94500 2.08890 2.29615 2.83090 3.21720 3.25924 3.34010 3.46254 3.59832 3.64706 3.84352 3.97413 3.98912 4.14702 4.25756 4.27409 4.35362 4.38192 4.42515 4.50636 4.53087 4.57451 4.60315 4.63055 4.65254 4.70634 4.76074 4.78038 4.89172 4.95490 4.98662 5.01238 5.04186 5.12850 5.15660 5.20328 5.21356 5.24556 5.30651 5.38047 5.42925 5.51236 5.91667 6.06475 6.16147 6.49615 6.63663 7.11873 7.15827 7.59734 8.16338 8.72435 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027846 B = 0.001992 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.295634 B =14053.220940 C =14679.972433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.100 4.100 4 H 0.118 0.882 5 C -0.150 4.150 6 C 0.523 3.477 7 O -0.592 6.592 8 N -0.616 5.616 9 C 0.098 3.902 10 C -0.117 4.117 11 C -0.081 4.081 12 C -0.105 4.105 13 C 0.056 3.944 14 N -0.530 5.530 15 C 0.056 3.944 16 C 0.440 3.560 17 O -0.617 6.617 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.060 3.940 28 C 0.127 3.873 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.044 0.956 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.073 0.927 50 H 0.077 0.923 51 H 0.064 0.936 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.549 -16.234 -5.613 26.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.120 4.120 4 H 0.136 0.864 5 C -0.207 4.207 6 C 0.313 3.687 7 O -0.472 6.472 8 N -0.349 5.349 9 C -0.024 4.024 10 C -0.155 4.155 11 C -0.083 4.083 12 C -0.143 4.143 13 C -0.071 4.071 14 N -0.255 5.255 15 C -0.076 4.076 16 C 0.228 3.772 17 O -0.503 6.503 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.094 0.906 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.067 4.067 28 C 0.004 3.996 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.125 0.875 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.096 0.904 51 H 0.082 0.918 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.172 -17.071 -5.695 26.294 hybrid contribution 0.273 1.015 0.021 1.051 sum -18.899 -16.055 -5.674 25.439 Atomic orbital electron populations 1.21807 0.93335 1.02408 1.02921 1.21321 0.97069 0.94166 1.01789 1.21351 0.88741 0.99578 1.02377 0.86419 1.21984 1.03576 1.00994 0.94123 1.21133 0.91195 0.81550 0.74772 1.90683 1.71601 1.32555 1.52393 1.48742 1.07454 1.06739 1.71966 1.22753 0.97650 0.79798 1.02155 1.22768 0.91557 0.99080 1.02105 1.21645 0.96596 0.93974 0.96067 1.22546 0.96937 0.96085 0.98739 1.22933 1.00549 0.97116 0.86509 1.63265 1.45005 1.06505 1.10712 1.21963 0.94112 0.89550 1.01944 1.20871 0.90626 0.83015 0.82707 1.90489 1.34248 1.76610 1.48953 1.41926 1.15613 1.11529 1.52296 1.19661 0.94984 0.94463 1.36891 0.90561 1.25989 1.00716 0.98604 0.95940 1.69671 1.27489 1.20411 1.38573 0.84905 0.77656 0.77717 0.78262 1.20002 1.19549 1.19700 1.22768 0.93039 0.94837 0.96019 1.21663 0.81263 0.95126 1.01561 0.92386 0.91245 0.91655 0.93055 0.93028 0.90412 0.89159 0.93451 0.87741 0.89491 0.88856 0.89145 0.90939 0.88617 0.93817 0.92803 0.90753 0.87523 0.77003 0.91362 0.90872 0.90427 0.91762 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.67 71.98 0.70 -0.60 16 2 C -0.11 -1.53 4.75 30.59 0.15 -1.39 16 3 C -0.10 -1.27 2.08 -11.54 -0.02 -1.29 16 4 H 0.12 0.99 7.85 -2.38 -0.02 0.97 16 5 C -0.15 -1.35 8.76 71.98 0.63 -0.72 16 6 C 0.52 10.89 7.22 87.66 0.63 11.52 16 7 O -0.59 -17.95 16.25 -3.05 -0.05 -18.00 16 8 N -0.62 -10.65 3.34 -812.87 -2.71 -13.37 16 9 C 0.10 1.01 5.11 86.92 0.44 1.45 16 10 C -0.12 -1.46 5.85 31.57 0.18 -1.28 16 11 C -0.08 -1.46 0.61 -51.86 -0.03 -1.50 16 12 C -0.10 -2.22 5.92 31.56 0.19 -2.04 16 13 C 0.06 1.69 5.69 86.84 0.49 2.18 16 14 N -0.53 -16.50 4.88 -891.18 -4.35 -20.84 16 15 C 0.06 1.83 5.06 85.56 0.43 2.27 16 16 C 0.44 20.73 7.58 87.66 0.66 21.39 16 17 O -0.62 -34.21 14.62 -3.06 -0.04 -34.26 16 18 N -0.58 -29.19 5.29 -306.99 -1.62 -30.81 16 19 C -0.33 -18.70 9.68 84.04 0.81 -17.89 16 20 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 21 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 22 N -0.92 -49.09 13.05 21.66 0.28 -48.81 16 23 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 C 0.06 1.33 6.00 86.07 0.52 1.85 16 28 C 0.13 2.52 6.13 86.14 0.53 3.05 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.46 6.56 -2.39 -0.02 0.45 16 31 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.05 0.92 7.95 -2.39 -0.02 0.90 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 0.53 4.99 -2.38 -0.01 0.52 16 35 H 0.09 0.49 6.57 -2.39 -0.02 0.47 16 36 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.10 0.59 7.38 -2.39 -0.02 0.58 16 38 H 0.09 0.74 7.05 -2.39 -0.02 0.72 16 39 H 0.09 1.12 7.94 -2.39 -0.02 1.10 16 40 H 0.09 1.01 7.82 -2.39 -0.02 1.00 16 41 H 0.07 1.64 8.09 -2.39 -0.02 1.62 16 42 H 0.10 1.65 7.78 -2.39 -0.02 1.63 16 43 H 0.04 1.27 7.62 -2.39 -0.02 1.25 16 44 H 0.05 2.03 7.39 -2.39 -0.02 2.01 16 45 H 0.07 2.07 7.85 -2.38 -0.02 2.05 16 46 H 0.11 3.11 8.05 -2.39 -0.02 3.09 16 47 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 48 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 49 H 0.07 1.72 7.44 -2.38 -0.02 1.70 16 50 H 0.08 1.40 7.21 -2.39 -0.02 1.38 16 51 H 0.06 1.38 7.86 -2.39 -0.02 1.36 16 52 H 0.06 1.35 7.41 -2.39 -0.02 1.33 16 Total: -1.00 -75.01 400.65 0.50 -74.51 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.18 Total: 29.90 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 6.78 Total: 16.79 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -8.40 Total: -113.83 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -0.09 Total: -52.26 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -75.01 0.50 -74.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269720382.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.727 kcal (2) G-P(sol) polarization free energy of solvation -75.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds