Wall clock time and date at job start Tue Mar 31 2020 20:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46988 * 2 1 4 4 H 1.08999 * 109.47421 * 54.99837 * 3 2 1 5 5 C 1.53005 * 109.46920 * 294.99603 * 3 2 1 6 6 C 1.50698 * 109.47038 * 174.99741 * 3 2 1 7 7 O 1.21283 * 119.99907 * 34.91201 * 6 3 2 8 8 N 1.34775 * 120.00161 * 214.90719 * 6 3 2 9 9 C 1.47542 * 125.66764 * 354.89364 * 8 6 3 10 10 C 1.55139 * 104.97069 * 203.91215 * 9 8 6 11 11 C 1.53968 * 101.47825 * 324.26534 * 10 9 8 12 12 C 1.53386 * 111.12272 * 273.71260 * 11 10 9 13 13 C 1.55217 * 102.59325 * 217.17710 * 12 11 10 14 14 N 1.48646 * 103.39298 * 36.38199 * 13 12 11 15 15 C 1.46907 * 110.99802 * 200.97693 * 14 13 12 16 16 C 1.50704 * 109.47059 * 287.46386 * 15 14 13 17 17 O 1.21291 * 119.99855 * 359.97438 * 16 15 14 18 18 N 1.34769 * 119.99810 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00109 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99895 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00382 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00259 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99998 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47372 * 89.99604 * 23 21 19 25 25 H 1.48495 * 109.47594 * 209.99883 * 23 21 19 26 26 H 1.48501 * 109.47077 * 329.99992 * 23 21 19 27 27 C 1.48246 * 105.87316 * 321.51864 * 14 13 12 28 28 C 1.47334 * 125.67103 * 174.89843 * 8 6 3 29 29 H 1.09004 * 109.47335 * 300.00040 * 1 2 3 30 30 H 1.08995 * 109.47441 * 60.00435 * 1 2 3 31 31 H 1.09003 * 109.46692 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47289 * 239.99369 * 2 1 3 33 33 H 1.09003 * 109.46681 * 119.99843 * 2 1 3 34 34 H 1.09004 * 109.46829 * 65.16147 * 5 3 2 35 35 H 1.08998 * 109.47175 * 185.15471 * 5 3 2 36 36 H 1.08998 * 109.47182 * 305.16247 * 5 3 2 37 37 H 1.08995 * 110.34290 * 322.78512 * 9 8 6 38 38 H 1.08999 * 110.34009 * 84.93410 * 9 8 6 39 39 H 1.09002 * 111.03318 * 82.29106 * 10 9 8 40 40 H 1.08998 * 111.02431 * 206.16600 * 10 9 8 41 41 H 1.08997 * 110.78303 * 335.45529 * 12 11 10 42 42 H 1.08996 * 110.78218 * 98.89948 * 12 11 10 43 43 H 1.09000 * 110.63300 * 277.90370 * 13 12 11 44 44 H 1.09001 * 110.76717 * 154.92468 * 13 12 11 45 45 H 1.09001 * 109.46864 * 47.46013 * 15 14 13 46 46 H 1.08993 * 109.47308 * 167.46150 * 15 14 13 47 47 H 0.96999 * 119.99998 * 359.97438 * 18 16 15 48 48 H 0.97006 * 120.00215 * 180.02562 * 22 21 19 49 49 H 1.08994 * 110.04670 * 265.79721 * 27 14 13 50 50 H 1.09001 * 110.07738 * 144.37363 * 27 14 13 51 51 H 1.08998 * 109.96622 * 297.42692 * 28 8 6 52 52 H 1.08993 * 109.97282 * 58.65584 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 8 4.1946 0.5666 -0.4001 8 7 4.1597 2.4213 0.8168 9 6 3.5034 3.6015 1.4113 10 6 4.6248 4.6671 1.5284 11 6 5.8444 3.7921 1.8715 12 6 5.9433 3.5500 3.3829 13 6 7.4749 3.5867 3.6320 14 7 7.9516 4.6347 2.6918 15 6 9.3863 4.4810 2.4157 16 6 10.1787 4.8985 3.6277 17 8 9.6048 5.2864 4.6233 18 7 11.5250 4.8419 3.6048 19 6 12.2459 5.2222 4.7072 20 1 11.7349 5.5676 5.5938 21 6 13.6339 5.1633 4.6839 22 7 14.3250 5.5282 5.7404 23 14 14.5178 4.5666 3.1503 24 1 14.7996 5.7215 2.2604 25 1 15.7956 3.9162 3.5367 26 1 13.6609 3.5876 2.4343 27 6 7.1515 4.4647 1.4555 28 6 5.6027 2.4884 1.1066 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.5492 2.2072 -1.3542 35 1 2.0756 3.1228 -1.3478 36 1 1.9925 1.5368 -2.1517 37 1 2.7065 3.9601 0.7600 38 1 3.1058 3.3578 2.3965 39 1 4.7709 5.1869 0.5815 40 1 4.4110 5.3732 2.3307 41 1 5.4423 4.3448 3.9355 42 1 5.5318 2.5757 3.6462 43 1 7.9259 2.6233 3.3942 44 1 7.6922 3.8674 4.6626 45 1 9.6017 3.4383 2.1823 46 1 9.6622 5.1077 1.5676 47 1 11.9839 4.5320 2.8084 48 1 15.2940 5.4875 5.7240 49 1 7.6876 3.8329 0.7474 50 1 6.9452 5.4364 1.0067 51 1 5.8994 1.6370 1.7190 52 1 6.1695 2.4926 0.1756 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269720384.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:20 Heat of formation + Delta-G solvation = -91.868645 kcal Electronic energy + Delta-G solvation = -29744.920227 eV Core-core repulsion = 25743.004385 eV Total energy + Delta-G solvation = -4001.915841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.80784 -40.62153 -39.81025 -37.49899 -36.37754 -35.94513 -33.82627 -33.51680 -31.19852 -30.74508 -30.04397 -28.85510 -27.04881 -26.02189 -25.11970 -23.82468 -22.57809 -22.20127 -21.26159 -20.49423 -20.08045 -19.81761 -18.22729 -17.80312 -17.10204 -16.97639 -16.57708 -16.31048 -16.21030 -15.98465 -15.78973 -15.30249 -15.16236 -14.83932 -14.51324 -14.39684 -14.32338 -14.02705 -13.94086 -13.76984 -13.55203 -13.47864 -13.19861 -13.03830 -13.01005 -12.68555 -12.62491 -12.54253 -12.47598 -12.41838 -12.26270 -12.00337 -11.93549 -11.68966 -11.63642 -11.58417 -11.49381 -11.40524 -10.75148 -10.39426 -10.23997 -9.71399 -9.31582 -8.41497 -6.01902 1.29078 1.34276 1.42837 1.56231 1.92893 1.96400 2.21970 2.64205 3.13588 3.18794 3.34416 3.45436 3.51701 3.68686 3.83694 3.92139 3.98859 4.11980 4.20850 4.24889 4.30050 4.37096 4.38088 4.43484 4.50574 4.55826 4.58475 4.61709 4.64269 4.68524 4.72437 4.78186 4.90201 4.94307 4.96531 5.02413 5.04695 5.12350 5.14262 5.17291 5.21346 5.23334 5.29800 5.36040 5.47480 5.52508 5.87347 5.93242 6.03323 6.48783 6.59980 6.88688 7.10478 7.40162 7.97656 8.76142 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027916 B = 0.001981 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.752787 B =14130.395106 C =14501.426972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.099 4.099 4 H 0.114 0.886 5 C -0.138 4.138 6 C 0.524 3.476 7 O -0.592 6.592 8 N -0.618 5.618 9 C 0.096 3.904 10 C -0.110 4.110 11 C -0.072 4.072 12 C -0.096 4.096 13 C 0.036 3.964 14 N -0.512 5.512 15 C 0.044 3.956 16 C 0.453 3.547 17 O -0.604 6.604 18 N -0.594 5.594 19 C -0.326 4.326 20 H 0.056 0.944 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.256 1.256 25 H -0.275 1.275 26 H -0.235 1.235 27 C 0.051 3.949 28 C 0.121 3.879 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.037 0.963 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.120 0.880 47 H 0.388 0.612 48 H 0.279 0.721 49 H 0.056 0.944 50 H 0.099 0.901 51 H 0.054 0.946 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.939 -6.699 -17.625 34.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.120 4.120 4 H 0.132 0.868 5 C -0.195 4.195 6 C 0.314 3.686 7 O -0.473 6.473 8 N -0.351 5.351 9 C -0.025 4.025 10 C -0.148 4.148 11 C -0.073 4.073 12 C -0.134 4.134 13 C -0.092 4.092 14 N -0.236 5.236 15 C -0.087 4.087 16 C 0.241 3.759 17 O -0.488 6.488 18 N -0.237 5.237 19 C -0.455 4.455 20 H 0.074 0.926 21 C -0.213 4.213 22 N -0.575 5.575 23 Si 0.784 3.216 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.158 1.158 27 C -0.076 4.076 28 C -0.002 4.002 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.138 0.862 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.074 0.926 50 H 0.117 0.883 51 H 0.073 0.927 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -28.898 -6.396 -16.948 34.107 hybrid contribution 1.821 -1.176 -0.322 2.191 sum -27.078 -7.572 -17.270 32.997 Atomic orbital electron populations 1.21788 0.93089 1.02483 1.03024 1.21384 0.97502 0.94033 1.01748 1.21381 0.88646 0.99584 1.02429 0.86783 1.21768 1.03520 1.00072 0.94175 1.21156 0.91526 0.79553 0.76353 1.90679 1.68715 1.39063 1.48824 1.48792 1.08563 1.24108 1.53622 1.22688 0.96471 0.83725 0.99627 1.22807 0.91544 0.96477 1.03992 1.21465 0.96337 0.94319 0.95201 1.22421 0.94001 1.02798 0.94167 1.23282 0.96153 0.92173 0.97594 1.64535 1.01434 1.46982 1.10691 1.22026 0.89245 1.01860 0.95611 1.20844 0.82131 0.82349 0.90609 1.90527 1.70310 1.51262 1.36691 1.42050 1.05955 1.60879 1.14771 1.18995 0.89940 1.42599 0.94013 0.92605 1.26081 0.96430 0.97086 1.01746 1.69802 1.07924 1.48302 1.31488 0.85382 0.78681 0.79795 0.77770 1.18034 1.20038 1.15810 1.22899 0.92100 1.01417 0.91192 1.21874 0.82268 0.97107 0.98916 0.91471 0.91250 0.92342 0.92776 0.93121 0.88778 0.91596 0.93414 0.87882 0.89753 0.89218 0.87914 0.89468 0.90188 0.94427 0.92311 0.90800 0.86202 0.77649 0.91184 0.92550 0.88281 0.92717 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 71.98 0.70 -0.46 16 2 C -0.11 -1.48 4.98 30.59 0.15 -1.33 16 3 C -0.10 -1.21 2.16 -11.54 -0.02 -1.23 16 4 H 0.11 0.82 7.14 -2.39 -0.02 0.81 16 5 C -0.14 -1.26 8.80 71.98 0.63 -0.63 16 6 C 0.52 10.64 6.84 87.66 0.60 11.24 16 7 O -0.59 -17.80 16.71 -3.04 -0.05 -17.85 16 8 N -0.62 -10.34 3.34 -812.70 -2.71 -13.05 16 9 C 0.10 0.89 6.09 86.91 0.53 1.42 16 10 C -0.11 -1.19 5.90 31.65 0.19 -1.00 16 11 C -0.07 -1.21 0.74 -51.78 -0.04 -1.25 16 12 C -0.10 -1.94 6.04 31.48 0.19 -1.75 16 13 C 0.04 1.05 5.95 86.73 0.52 1.57 16 14 N -0.51 -15.14 4.92 -888.19 -4.37 -19.51 16 15 C 0.04 1.39 5.20 85.56 0.45 1.84 16 16 C 0.45 20.79 7.61 87.66 0.67 21.46 16 17 O -0.60 -33.69 14.65 -3.06 -0.04 -33.73 16 18 N -0.59 -28.53 5.09 -306.99 -1.56 -30.09 16 19 C -0.33 -19.33 10.16 84.04 0.85 -18.48 16 20 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 21 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 22 N -0.93 -56.82 13.96 21.66 0.30 -56.51 16 23 Si 0.96 39.43 27.74 68.60 1.90 41.33 16 24 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 25 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 26 H -0.23 -8.18 6.52 99.48 0.65 -7.54 16 27 C 0.05 1.03 6.01 85.97 0.52 1.55 16 28 C 0.12 2.33 5.98 86.24 0.52 2.85 16 29 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.07 0.41 6.68 -2.39 -0.02 0.39 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.94 8.02 -2.39 -0.02 0.92 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.09 0.43 6.82 -2.38 -0.02 0.42 16 35 H 0.07 0.52 7.97 -2.39 -0.02 0.50 16 36 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.10 0.48 7.52 -2.39 -0.02 0.46 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.09 0.84 7.89 -2.39 -0.02 0.82 16 40 H 0.10 0.99 7.65 -2.39 -0.02 0.97 16 41 H 0.09 1.69 7.59 -2.39 -0.02 1.67 16 42 H 0.08 1.48 7.61 -2.39 -0.02 1.46 16 43 H 0.04 1.09 7.80 -2.39 -0.02 1.07 16 44 H 0.06 2.21 7.12 -2.39 -0.02 2.19 16 45 H 0.07 2.03 7.83 -2.39 -0.02 2.01 16 46 H 0.12 3.09 8.08 -2.39 -0.02 3.07 16 47 H 0.39 15.53 5.76 -92.71 -0.53 14.99 16 48 H 0.28 15.49 8.31 -92.70 -0.77 14.72 16 49 H 0.06 1.06 7.04 -2.39 -0.02 1.04 16 50 H 0.10 1.75 7.58 -2.39 -0.02 1.73 16 51 H 0.05 1.22 7.60 -2.39 -0.02 1.20 16 52 H 0.06 1.29 7.49 -2.39 -0.02 1.27 16 Total: -1.00 -83.44 402.34 0.68 -82.76 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.32 Total: 31.22 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 6.91 Total: 15.43 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -8.34 Total: -119.16 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.10 Total: -51.58 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.90 Total: 41.33 kcal Total: -83.44 0.68 -82.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269720384.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.112 kcal (2) G-P(sol) polarization free energy of solvation -83.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds