Wall clock time and date at job start Tue Mar 31 2020 19:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46955 * 2 1 4 4 C 1.50696 * 109.47389 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99915 * 0.02562 * 4 3 2 6 6 N 1.34782 * 120.00521 * 179.97438 * 4 3 2 7 7 C 1.46494 * 120.00368 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47235 * 180.02562 * 7 6 4 9 9 H 1.09006 * 109.42674 * 300.21857 * 8 7 6 10 10 C 1.53134 * 109.42857 * 60.05869 * 8 7 6 11 11 C 1.53719 * 108.88774 * 66.06574 * 10 8 7 12 12 H 1.08993 * 112.61562 * 188.03811 * 11 10 8 13 13 C 1.54605 * 107.80821 * 312.37721 * 11 10 8 14 14 C 1.54286 * 104.84422 * 88.55407 * 13 11 10 15 15 C 1.54608 * 104.84112 * 0.02562 * 14 13 11 16 16 H 1.08996 * 112.72686 * 147.14122 * 15 14 13 17 17 C 1.53135 * 109.42972 * 180.32350 * 8 7 6 18 18 N 1.48713 * 107.23709 * 64.08448 * 11 10 8 19 19 C 1.46903 * 111.00059 * 168.34593 * 18 11 10 20 20 C 1.50695 * 109.47166 * 296.99727 * 19 18 11 21 21 O 1.21297 * 120.00146 * 357.69517 * 20 19 18 22 22 N 1.34778 * 120.00242 * 177.69581 * 20 19 18 23 23 C 1.37098 * 120.00206 * 179.97438 * 22 20 19 24 24 H 1.08005 * 119.99953 * 0.02562 * 23 22 20 25 25 C 1.38949 * 119.99894 * 180.02562 * 23 22 20 26 26 N 1.31412 * 120.00213 * 359.97438 * 25 23 22 27 27 Si 1.86808 * 119.99772 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46947 * 89.99984 * 27 25 23 29 29 H 1.48502 * 109.46628 * 209.99726 * 27 25 23 30 30 H 1.48493 * 109.47120 * 330.00120 * 27 25 23 31 31 H 1.09007 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47791 * 299.99935 * 1 2 3 33 33 H 1.09001 * 109.47471 * 60.00456 * 1 2 3 34 34 H 1.09001 * 109.47471 * 119.99544 * 2 1 3 35 35 H 1.08997 * 109.47791 * 240.00065 * 2 1 3 36 36 H 1.09005 * 109.47142 * 300.00066 * 3 2 1 37 37 H 1.09009 * 109.47172 * 59.99698 * 3 2 1 38 38 H 0.97003 * 119.99301 * 0.02562 * 6 4 3 39 39 H 1.09005 * 109.47406 * 300.00432 * 7 6 4 40 40 H 1.09009 * 109.46991 * 60.00114 * 7 6 4 41 41 H 1.08992 * 109.57158 * 185.88344 * 10 8 7 42 42 H 1.08996 * 109.57328 * 306.24734 * 10 8 7 43 43 H 1.09005 * 110.36431 * 207.39612 * 13 11 10 44 44 H 1.08999 * 110.36705 * 329.59998 * 13 11 10 45 45 H 1.08999 * 110.36854 * 241.16339 * 14 13 11 46 46 H 1.09000 * 110.36498 * 118.84201 * 14 13 11 47 47 H 1.09005 * 109.56723 * 53.75514 * 17 8 7 48 48 H 1.09000 * 109.57263 * 173.99172 * 17 8 7 49 49 H 1.08999 * 109.46768 * 56.99364 * 19 18 11 50 50 H 1.08994 * 109.47399 * 176.99319 * 19 18 11 51 51 H 0.97004 * 119.99917 * 0.02562 * 22 20 19 52 52 H 0.97001 * 119.99946 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1533 0.3923 0.0006 6 7 4.2208 2.6099 0.0002 7 6 5.6857 2.6099 0.0014 8 6 6.1957 4.0524 0.0013 9 1 5.8294 4.5664 -0.8875 10 6 5.6849 4.7734 1.2520 11 6 6.3265 4.1320 2.4930 12 1 5.9007 4.5044 3.4247 13 6 6.1868 2.5982 2.3582 14 6 7.4447 2.1534 1.5833 15 6 8.2304 3.4588 1.3209 16 1 9.3098 3.3076 1.3198 17 6 7.7270 4.0514 -0.0056 18 7 7.7912 4.3746 2.4069 19 6 8.4550 4.0434 3.6749 20 6 7.9403 4.9498 4.7631 21 8 7.1339 5.8167 4.4995 22 7 8.3760 4.7973 6.0294 23 6 7.9081 5.6223 7.0194 24 1 7.1900 6.3942 6.7846 25 6 8.3578 5.4655 8.3247 26 7 9.2311 4.5260 8.6104 27 14 7.7197 6.5892 9.6737 28 1 6.5052 5.9903 10.2835 29 1 8.7655 6.7559 10.7148 30 1 7.3811 7.9142 9.0953 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.6765 1.9564 -0.8900 37 1 1.6765 1.9564 0.8900 38 1 3.7357 3.4499 -0.0001 39 1 6.0484 2.0968 0.8921 40 1 6.0498 2.0954 -0.8879 41 1 5.9584 5.8273 1.2032 42 1 4.6007 4.6781 1.3112 43 1 6.1631 2.1315 3.3430 44 1 5.2859 2.3470 1.7984 45 1 7.1633 1.6837 0.6409 46 1 8.0394 1.4679 2.1871 47 1 8.0879 3.4451 -0.8365 48 1 8.0924 5.0726 -0.1132 49 1 8.2436 3.0063 3.9356 50 1 9.5312 4.1789 3.5678 51 1 9.0212 4.1044 6.2402 52 1 9.5452 4.4168 9.5217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271720867.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:07 Heat of formation + Delta-G solvation = 14.014268 kcal Electronic energy + Delta-G solvation = -30909.216299 eV Core-core repulsion = 26911.891885 eV Total energy + Delta-G solvation = -3997.324414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.25776 -39.56007 -38.05521 -35.48684 -34.53844 -33.93577 -32.86878 -31.65408 -31.29383 -31.07009 -28.91468 -27.48475 -25.46851 -24.13313 -23.94259 -22.23527 -21.31749 -20.68970 -20.21743 -19.19198 -18.91923 -17.86528 -17.29391 -16.88282 -16.09420 -15.98638 -15.78260 -15.05508 -14.56130 -14.44119 -14.37497 -14.04620 -13.85025 -13.69659 -13.38349 -13.34974 -13.18775 -12.76877 -12.51338 -12.48599 -12.31066 -12.07098 -11.98784 -11.83008 -11.71203 -11.50399 -11.45083 -11.13223 -11.00886 -10.97017 -10.81425 -10.51416 -10.40210 -10.27845 -10.21970 -10.17609 -9.86420 -9.75095 -9.45909 -8.62597 -8.38672 -8.05561 -7.94095 -6.41477 -3.82231 2.55327 3.11642 3.17340 3.26046 3.31795 3.91453 4.01264 4.22837 4.54181 4.59796 4.62814 4.67142 4.73068 4.79544 4.99594 5.03084 5.09698 5.16674 5.18952 5.21176 5.27048 5.30630 5.34129 5.38535 5.45249 5.47748 5.54102 5.63726 5.69232 5.75969 5.85231 5.87062 5.88420 5.89377 6.02259 6.04455 6.05650 6.09601 6.14718 6.23244 6.28335 6.30067 6.40467 6.46527 6.53315 7.18518 7.36360 7.40007 7.55126 8.06666 8.13912 8.62019 9.18229 9.55142 10.06674 10.76293 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.002685 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.423828 B =10427.337225 C =11618.094841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.506 3.494 5 O -0.545 6.545 6 N -0.727 5.727 7 C 0.000 4.000 8 C -0.092 4.092 9 H 0.068 0.932 10 C -0.099 4.099 11 C 0.072 3.928 12 H 0.116 0.884 13 C -0.189 4.189 14 C -0.182 4.182 15 C 0.061 3.939 16 H 0.094 0.906 17 C -0.097 4.097 18 N -0.476 5.476 19 C 0.033 3.967 20 C 0.444 3.556 21 O -0.579 6.579 22 N -0.564 5.564 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.929 3.071 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.396 0.604 39 H 0.189 0.811 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.050 0.950 50 H 0.088 0.912 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.606 -6.643 -18.753 22.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.183 4.183 4 C 0.293 3.707 5 O -0.422 6.422 6 N -0.379 5.379 7 C -0.120 4.120 8 C -0.111 4.111 9 H 0.086 0.914 10 C -0.137 4.137 11 C -0.036 4.036 12 H 0.134 0.866 13 C -0.228 4.228 14 C -0.221 4.221 15 C -0.049 4.049 16 H 0.112 0.888 17 C -0.135 4.135 18 N -0.198 5.198 19 C -0.099 4.099 20 C 0.230 3.770 21 O -0.464 6.464 22 N -0.201 5.201 23 C -0.428 4.428 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.756 3.244 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.230 0.770 39 H 0.204 0.796 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.126 0.874 45 H 0.122 0.878 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.097 0.903 49 H 0.068 0.932 50 H 0.106 0.894 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.459 -6.259 -18.851 22.000 hybrid contribution -0.184 -0.264 0.987 1.038 sum -9.643 -6.523 -17.865 21.323 Atomic orbital electron populations 1.21799 0.95555 1.01939 1.01773 1.21268 0.95178 0.94734 1.03542 1.21742 0.92060 1.00198 1.04312 1.20743 0.90277 0.83692 0.75987 1.90694 1.70596 1.31323 1.49620 1.46333 1.08168 1.08415 1.74952 1.25099 0.79157 0.99555 1.08165 1.21319 0.96385 0.94675 0.98737 0.91372 1.21661 0.98457 1.00604 0.92958 1.23133 0.89147 0.91407 0.99941 0.86602 1.23831 0.99218 0.99115 1.00607 1.23713 0.96907 0.99687 1.01746 1.23119 0.99037 0.89826 0.92882 0.88806 1.21640 0.93862 1.02123 0.95894 1.65171 1.03898 1.47331 1.03390 1.21974 0.99650 0.97741 0.90531 1.19731 0.86228 0.87657 0.83397 1.90491 1.36989 1.36827 1.82068 1.41883 1.40035 1.32088 1.06070 1.19683 1.23499 1.12905 0.86680 0.87951 1.25259 0.96623 0.97582 0.98507 1.69613 1.31088 1.32522 1.21087 0.85872 0.78221 0.80250 0.80033 1.20449 1.20930 1.19421 0.92441 0.92594 0.92786 0.91162 0.91378 0.89155 0.88868 0.76969 0.79573 0.92995 0.90401 0.92296 0.91919 0.87414 0.87765 0.91568 0.91720 0.90339 0.93238 0.89407 0.77511 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.11 -0.91 5.22 -26.73 -0.14 -1.05 16 3 C -0.14 -1.10 5.70 -27.89 -0.16 -1.26 16 4 C 0.51 5.57 7.58 -10.99 -0.08 5.49 16 5 O -0.54 -8.12 15.98 5.55 0.09 -8.03 16 6 N -0.73 -6.98 4.38 -60.29 -0.26 -7.24 16 7 C 0.00 0.00 2.68 -4.05 -0.01 -0.02 16 8 C -0.09 -0.96 2.76 -90.48 -0.25 -1.21 16 9 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 10 C -0.10 -1.24 5.27 -26.29 -0.14 -1.38 16 11 C 0.07 1.12 3.13 -65.49 -0.21 0.92 16 12 H 0.12 2.26 5.92 -51.93 -0.31 1.95 16 13 C -0.19 -2.58 5.04 -25.21 -0.13 -2.71 16 14 C -0.18 -2.20 5.05 -25.21 -0.13 -2.33 16 15 C 0.06 0.75 3.68 -65.48 -0.24 0.51 16 16 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 17 C -0.10 -1.04 5.37 -26.26 -0.14 -1.18 16 18 N -0.48 -7.65 4.80 -214.37 -1.03 -8.68 16 19 C 0.03 0.58 5.30 -4.98 -0.03 0.56 16 20 C 0.44 10.35 7.33 -10.99 -0.08 10.27 16 21 O -0.58 -15.20 13.96 5.54 0.08 -15.13 16 22 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 23 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 24 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 27 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 30 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 31 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.40 2.95 7.32 -40.82 -0.30 2.65 16 39 H 0.19 2.23 1.11 -167.40 -0.19 2.05 16 40 H 0.05 0.59 7.99 -51.92 -0.42 0.18 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.06 0.64 6.72 -51.93 -0.35 0.29 16 43 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 44 H 0.11 1.39 3.94 -51.93 -0.20 1.18 16 45 H 0.10 1.18 4.83 -51.93 -0.25 0.93 16 46 H 0.07 0.79 8.06 -51.93 -0.42 0.38 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.05 0.83 6.88 -51.93 -0.36 0.47 16 50 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 51 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 52 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 387.46 15.07 5.84 5.84 Total: -1.00 -32.21 387.46 -9.78 -41.98 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -8.53 Total: 15.30 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.60 Total: -1.90 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.63 Total: -54.06 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.17 Total: -23.16 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.21 -9.78 -41.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271720867.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.997 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds