Wall clock time and date at job start Tue Mar 31 2020 19:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46955 * 2 1 4 4 C 1.50696 * 109.47389 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99915 * 0.02562 * 4 3 2 6 6 N 1.34782 * 120.00521 * 179.97438 * 4 3 2 7 7 C 1.46494 * 120.00368 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47235 * 180.02562 * 7 6 4 9 9 H 1.09006 * 109.42674 * 300.21857 * 8 7 6 10 10 C 1.53134 * 109.42857 * 60.05869 * 8 7 6 11 11 C 1.53719 * 108.88774 * 66.06574 * 10 8 7 12 12 H 1.08993 * 112.61562 * 188.03811 * 11 10 8 13 13 C 1.54605 * 107.80821 * 312.37721 * 11 10 8 14 14 C 1.54286 * 104.84422 * 88.55407 * 13 11 10 15 15 C 1.54608 * 104.84112 * 0.02562 * 14 13 11 16 16 H 1.08996 * 112.72686 * 147.14122 * 15 14 13 17 17 C 1.53135 * 109.42972 * 180.32350 * 8 7 6 18 18 N 1.48713 * 107.23709 * 64.08448 * 11 10 8 19 19 C 1.46903 * 111.00059 * 168.34593 * 18 11 10 20 20 C 1.50695 * 109.47166 * 296.99727 * 19 18 11 21 21 O 1.21297 * 120.00146 * 357.69517 * 20 19 18 22 22 N 1.34778 * 120.00242 * 177.69581 * 20 19 18 23 23 C 1.37098 * 120.00206 * 179.97438 * 22 20 19 24 24 H 1.08005 * 119.99953 * 0.02562 * 23 22 20 25 25 C 1.38949 * 119.99894 * 180.02562 * 23 22 20 26 26 N 1.31412 * 120.00213 * 359.97438 * 25 23 22 27 27 Si 1.86808 * 119.99772 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46947 * 89.99984 * 27 25 23 29 29 H 1.48502 * 109.46628 * 209.99726 * 27 25 23 30 30 H 1.48493 * 109.47120 * 330.00120 * 27 25 23 31 31 H 1.09007 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47791 * 299.99935 * 1 2 3 33 33 H 1.09001 * 109.47471 * 60.00456 * 1 2 3 34 34 H 1.09001 * 109.47471 * 119.99544 * 2 1 3 35 35 H 1.08997 * 109.47791 * 240.00065 * 2 1 3 36 36 H 1.09005 * 109.47142 * 300.00066 * 3 2 1 37 37 H 1.09009 * 109.47172 * 59.99698 * 3 2 1 38 38 H 0.97003 * 119.99301 * 0.02562 * 6 4 3 39 39 H 1.09005 * 109.47406 * 300.00432 * 7 6 4 40 40 H 1.09009 * 109.46991 * 60.00114 * 7 6 4 41 41 H 1.08992 * 109.57158 * 185.88344 * 10 8 7 42 42 H 1.08996 * 109.57328 * 306.24734 * 10 8 7 43 43 H 1.09005 * 110.36431 * 207.39612 * 13 11 10 44 44 H 1.08999 * 110.36705 * 329.59998 * 13 11 10 45 45 H 1.08999 * 110.36854 * 241.16339 * 14 13 11 46 46 H 1.09000 * 110.36498 * 118.84201 * 14 13 11 47 47 H 1.09005 * 109.56723 * 53.75514 * 17 8 7 48 48 H 1.09000 * 109.57263 * 173.99172 * 17 8 7 49 49 H 1.08999 * 109.46768 * 56.99364 * 19 18 11 50 50 H 1.08994 * 109.47399 * 176.99319 * 19 18 11 51 51 H 0.97004 * 119.99917 * 0.02562 * 22 20 19 52 52 H 0.97001 * 119.99946 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1533 0.3923 0.0006 6 7 4.2208 2.6099 0.0002 7 6 5.6857 2.6099 0.0014 8 6 6.1957 4.0524 0.0013 9 1 5.8294 4.5664 -0.8875 10 6 5.6849 4.7734 1.2520 11 6 6.3265 4.1320 2.4930 12 1 5.9007 4.5044 3.4247 13 6 6.1868 2.5982 2.3582 14 6 7.4447 2.1534 1.5833 15 6 8.2304 3.4588 1.3209 16 1 9.3098 3.3076 1.3198 17 6 7.7270 4.0514 -0.0056 18 7 7.7912 4.3746 2.4069 19 6 8.4550 4.0434 3.6749 20 6 7.9403 4.9498 4.7631 21 8 7.1339 5.8167 4.4995 22 7 8.3760 4.7973 6.0294 23 6 7.9081 5.6223 7.0194 24 1 7.1900 6.3942 6.7846 25 6 8.3578 5.4655 8.3247 26 7 9.2311 4.5260 8.6104 27 14 7.7197 6.5892 9.6737 28 1 6.5052 5.9903 10.2835 29 1 8.7655 6.7559 10.7148 30 1 7.3811 7.9142 9.0953 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.6765 1.9564 -0.8900 37 1 1.6765 1.9564 0.8900 38 1 3.7357 3.4499 -0.0001 39 1 6.0484 2.0968 0.8921 40 1 6.0498 2.0954 -0.8879 41 1 5.9584 5.8273 1.2032 42 1 4.6007 4.6781 1.3112 43 1 6.1631 2.1315 3.3430 44 1 5.2859 2.3470 1.7984 45 1 7.1633 1.6837 0.6409 46 1 8.0394 1.4679 2.1871 47 1 8.0879 3.4451 -0.8365 48 1 8.0924 5.0726 -0.1132 49 1 8.2436 3.0063 3.9356 50 1 9.5312 4.1789 3.5678 51 1 9.0212 4.1044 6.2402 52 1 9.5452 4.4168 9.5217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271720867.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:06 Heat of formation + Delta-G solvation = -8.849425 kcal Electronic energy + Delta-G solvation = -30910.207743 eV Core-core repulsion = 26911.891885 eV Total energy + Delta-G solvation = -3998.315858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.29555 -40.53619 -39.84670 -36.59807 -35.86503 -35.22441 -33.93738 -33.25265 -32.70228 -32.19634 -29.90300 -28.55332 -26.95906 -25.45379 -25.13939 -23.00006 -22.36963 -21.59267 -21.23380 -20.91355 -20.00354 -19.81302 -18.17688 -17.88267 -17.58292 -17.01115 -16.82024 -16.49132 -16.06951 -15.93243 -15.69222 -15.23980 -14.97460 -14.79696 -14.69192 -14.20083 -14.06192 -13.91238 -13.80287 -13.55285 -13.44449 -13.30260 -13.24100 -12.91804 -12.87859 -12.74518 -12.60877 -12.42811 -12.17402 -12.11477 -12.02735 -11.85090 -11.62331 -11.51803 -11.50334 -11.31109 -11.16015 -10.78855 -10.68642 -10.20863 -9.99619 -9.54494 -9.34804 -8.47014 -5.95596 1.36738 1.40192 1.53176 1.72173 2.05243 2.27757 2.34619 2.82146 3.19887 3.31998 3.62066 3.70565 3.81424 3.89768 4.01098 4.04546 4.08170 4.13336 4.22004 4.23437 4.29442 4.39267 4.43796 4.48845 4.54988 4.58347 4.61614 4.71697 4.75512 4.76594 4.78126 4.90644 4.92430 4.95801 5.01563 5.12845 5.19365 5.23078 5.24200 5.28445 5.32851 5.37447 5.39675 5.40757 5.45459 5.60235 5.93039 5.99697 6.17461 6.60011 6.63487 7.12364 7.33995 7.56053 8.11473 8.70609 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.002685 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.423828 B =10427.337225 C =11618.094841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.138 4.138 4 C 0.501 3.499 5 O -0.589 6.589 6 N -0.718 5.718 7 C 0.003 3.997 8 C -0.081 4.081 9 H 0.091 0.909 10 C -0.093 4.093 11 C 0.067 3.933 12 H 0.068 0.932 13 C -0.182 4.182 14 C -0.174 4.174 15 C 0.060 3.940 16 H 0.109 0.891 17 C -0.095 4.095 18 N -0.492 5.492 19 C 0.045 3.955 20 C 0.443 3.557 21 O -0.612 6.612 22 N -0.576 5.576 23 C -0.330 4.330 24 H 0.079 0.921 25 C -0.015 4.015 26 N -0.922 5.922 27 Si 0.993 3.007 28 H -0.271 1.271 29 H -0.271 1.271 30 H -0.272 1.272 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.409 0.591 39 H 0.174 0.826 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.066 0.934 47 H 0.092 0.908 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.107 0.893 51 H 0.394 0.606 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.133 -6.651 -20.441 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.177 4.177 4 C 0.289 3.711 5 O -0.470 6.470 6 N -0.371 5.371 7 C -0.117 4.117 8 C -0.099 4.099 9 H 0.109 0.891 10 C -0.131 4.131 11 C -0.041 4.041 12 H 0.086 0.914 13 C -0.220 4.220 14 C -0.212 4.212 15 C -0.048 4.048 16 H 0.127 0.873 17 C -0.133 4.133 18 N -0.215 5.215 19 C -0.087 4.087 20 C 0.230 3.770 21 O -0.498 6.498 22 N -0.213 5.213 23 C -0.460 4.460 24 H 0.097 0.903 25 C -0.214 4.214 26 N -0.563 5.563 27 Si 0.816 3.184 28 H -0.197 1.197 29 H -0.196 1.196 30 H -0.197 1.197 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.245 0.755 39 H 0.190 0.810 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.059 0.941 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.085 0.915 47 H 0.110 0.890 48 H 0.093 0.907 49 H 0.078 0.922 50 H 0.125 0.875 51 H 0.228 0.772 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.987 -6.257 -20.554 23.693 hybrid contribution -0.044 -0.259 1.474 1.498 sum -10.031 -6.516 -19.080 22.519 Atomic orbital electron populations 1.21764 0.93852 1.02319 1.02656 1.21245 0.96604 0.95008 1.01936 1.21785 0.89542 1.00097 1.06307 1.21341 0.91615 0.83192 0.74940 1.90677 1.71676 1.32870 1.51740 1.46268 1.07883 1.08808 1.74108 1.24887 0.79857 0.99434 1.07473 1.21240 0.96344 0.94241 0.98123 0.89112 1.21616 0.99308 0.99530 0.92677 1.22993 0.89103 0.92797 0.99253 0.91408 1.23804 1.00752 0.97519 0.99923 1.23675 0.95797 0.99563 1.02179 1.23296 1.00025 0.89179 0.92322 0.87327 1.21675 0.93846 1.02292 0.95513 1.65230 1.04118 1.48973 1.03149 1.21841 1.00495 0.96575 0.89765 1.20708 0.84940 0.87489 0.83829 1.90465 1.38181 1.38424 1.82693 1.41962 1.40582 1.32215 1.06575 1.19644 1.24428 1.13699 0.88182 0.90275 1.26050 0.96517 0.98824 1.00047 1.69680 1.31464 1.33313 1.21873 0.84934 0.78079 0.78119 0.77253 1.19665 1.19566 1.19685 0.92416 0.92042 0.91493 0.93249 0.92630 0.86492 0.87271 0.75479 0.81014 0.92758 0.92119 0.90736 0.94142 0.86511 0.86248 0.91520 0.88994 0.90749 0.92192 0.87547 0.77215 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 71.98 0.71 -0.93 16 2 C -0.11 -1.74 5.22 30.59 0.16 -1.58 16 3 C -0.14 -1.82 5.70 29.85 0.17 -1.65 16 4 C 0.50 10.26 7.58 87.65 0.66 10.92 16 5 O -0.59 -17.23 15.98 -3.04 -0.05 -17.27 16 6 N -0.72 -12.17 4.38 -463.05 -2.03 -14.20 16 7 C 0.00 0.07 2.68 86.38 0.23 0.30 16 8 C -0.08 -1.46 2.76 -10.70 -0.03 -1.49 16 9 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 10 C -0.09 -2.26 5.27 30.88 0.16 -2.09 16 11 C 0.07 2.12 3.13 45.35 0.14 2.27 16 12 H 0.07 2.81 5.92 -2.39 -0.01 2.79 16 13 C -0.18 -4.93 5.04 31.58 0.16 -4.77 16 14 C -0.17 -3.93 5.05 31.58 0.16 -3.77 16 15 C 0.06 1.37 3.68 45.37 0.17 1.54 16 16 H 0.11 2.19 8.11 -2.39 -0.02 2.17 16 17 C -0.10 -1.75 5.37 30.90 0.17 -1.59 16 18 N -0.49 -15.66 4.80 -832.13 -3.99 -19.66 16 19 C 0.04 1.61 5.30 85.55 0.45 2.06 16 20 C 0.44 21.39 7.33 87.66 0.64 22.03 16 21 O -0.61 -33.59 13.96 -3.08 -0.04 -33.64 16 22 N -0.58 -30.11 5.29 -306.98 -1.62 -31.73 16 23 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 24 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 25 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 26 N -0.92 -50.51 13.05 21.66 0.28 -50.23 16 27 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 28 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 29 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 30 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 31 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 35 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 36 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.41 4.92 7.32 -92.71 -0.68 4.24 16 39 H 0.17 3.83 1.11 -110.86 -0.12 3.71 16 40 H 0.05 1.07 7.99 -2.38 -0.02 1.05 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 1.52 6.72 -2.39 -0.02 1.50 16 43 H 0.04 1.25 8.05 -2.38 -0.02 1.23 16 44 H 0.12 2.93 3.94 -2.39 -0.01 2.92 16 45 H 0.12 2.41 4.83 -2.39 -0.01 2.39 16 46 H 0.07 1.50 8.06 -2.39 -0.02 1.48 16 47 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 48 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 49 H 0.06 2.02 6.88 -2.39 -0.02 2.01 16 50 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 51 H 0.39 19.78 7.90 -92.71 -0.73 19.05 16 52 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -72.66 387.46 -0.77 -73.42 By element: Atomic # 1 Polarization: 45.72 SS G_CDS: -0.58 Total: 45.14 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 5.24 Total: 2.80 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -7.36 Total: -115.82 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.09 Total: -50.91 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -72.66 -0.77 -73.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271720867.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.573 kcal (2) G-P(sol) polarization free energy of solvation -72.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds