Wall clock time and date at job start Tue Mar 31 2020 20:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47091 * 2 1 4 4 H 1.09003 * 109.47040 * 55.00085 * 3 2 1 5 5 C 1.52995 * 109.47164 * 294.99927 * 3 2 1 6 6 C 1.50704 * 109.47010 * 174.99466 * 3 2 1 7 7 O 1.21279 * 119.99677 * 19.15258 * 6 3 2 8 8 N 1.34770 * 119.99905 * 199.14652 * 6 3 2 9 9 C 1.45193 * 116.74585 * 354.69007 * 8 6 3 10 10 C 1.52981 * 110.52216 * 207.68741 * 9 8 6 11 11 C 1.53294 * 107.94868 * 308.70618 * 10 9 8 12 12 C 1.52541 * 108.88058 * 68.33668 * 11 10 9 13 13 H 1.09004 * 109.62208 * 64.94682 * 12 11 10 14 14 C 1.44078 * 116.74318 * 174.68814 * 8 6 3 15 15 H 1.09004 * 108.71481 * 40.52865 * 14 8 6 16 16 C 1.54367 * 110.56829 * 280.70828 * 14 8 6 17 17 C 1.53874 * 104.30012 * 208.67584 * 16 14 8 18 18 N 1.47227 * 107.71631 * 16.82576 * 17 16 14 19 19 C 1.46899 * 111.00024 * 123.35554 * 18 17 16 20 20 C 1.50700 * 109.47204 * 69.87075 * 19 18 17 21 21 O 1.21292 * 120.00149 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99646 * 180.02562 * 20 19 18 23 23 C 1.37101 * 120.00062 * 179.97438 * 22 20 19 24 24 H 1.08000 * 119.99570 * 0.02562 * 23 22 20 25 25 C 1.38947 * 120.00269 * 179.97438 * 23 22 20 26 26 N 1.31415 * 120.00054 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00166 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47125 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47330 * 119.99742 * 27 25 23 30 30 H 1.48497 * 109.47500 * 239.99840 * 27 25 23 31 31 H 1.09002 * 109.47010 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47546 * 300.00162 * 1 2 3 33 33 H 1.09007 * 109.46760 * 60.00400 * 1 2 3 34 34 H 1.08998 * 109.47546 * 239.99838 * 2 1 3 35 35 H 1.09000 * 109.47130 * 119.99733 * 2 1 3 36 36 H 1.09005 * 109.46951 * 307.04176 * 5 3 2 37 37 H 1.08997 * 109.47135 * 67.03826 * 5 3 2 38 38 H 1.08997 * 109.47057 * 187.04590 * 5 3 2 39 39 H 1.09001 * 109.26682 * 87.41431 * 9 8 6 40 40 H 1.09005 * 109.23886 * 327.94124 * 9 8 6 41 41 H 1.09000 * 109.77025 * 189.09146 * 10 9 8 42 42 H 1.09005 * 109.81054 * 68.34054 * 10 9 8 43 43 H 1.09000 * 109.56467 * 308.51702 * 11 10 9 44 44 H 1.08999 * 109.56769 * 188.15958 * 11 10 9 45 45 H 1.08994 * 110.47045 * 89.96836 * 16 14 8 46 46 H 1.09005 * 110.57314 * 327.42944 * 16 14 8 47 47 H 1.09000 * 109.80708 * 257.27146 * 17 16 14 48 48 H 1.09000 * 109.81019 * 136.37949 * 17 16 14 49 49 H 1.09000 * 109.46800 * 309.86731 * 19 18 17 50 50 H 1.08997 * 109.46872 * 189.87483 * 19 18 17 51 51 H 0.97008 * 120.00355 * 359.97438 * 22 20 19 52 52 H 0.97006 * 119.99695 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5419 1.4443 0.1240 7 8 4.1734 0.4432 -0.1406 8 7 4.1833 2.5584 0.5287 9 6 3.3727 3.7489 0.7120 10 6 4.2121 5.0086 0.4907 11 6 5.4728 4.8942 1.3553 12 6 6.3529 3.7792 0.7996 13 1 6.7041 4.0517 -0.1957 14 6 5.6049 2.4489 0.7362 15 1 6.0285 1.8370 -0.0603 16 6 5.9048 1.7867 2.0980 17 6 7.2658 2.3718 2.5136 18 7 7.5066 3.5715 1.6949 19 6 7.7345 4.7499 2.5420 20 6 9.0647 4.6186 3.2379 21 8 9.7548 3.6395 3.0474 22 7 9.4870 5.5887 4.0728 23 6 10.6970 5.4691 4.7064 24 1 11.3118 4.5977 4.5361 25 6 11.1326 6.4694 5.5666 26 7 10.3852 7.5305 5.7726 27 14 12.7808 6.3061 6.4304 28 1 13.4237 5.0279 6.0326 29 1 13.6564 7.4420 6.0451 30 1 12.5726 6.3183 7.9007 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.9633 1.5200 -2.1515 37 1 0.5514 2.2373 -1.3390 38 1 2.1028 3.1096 -1.3629 39 1 2.9708 3.7579 1.7252 40 1 2.5487 3.7358 -0.0014 41 1 3.6411 5.8888 0.7862 42 1 4.4916 5.0864 -0.5600 43 1 5.1912 4.6598 2.3819 44 1 6.0190 5.8371 1.3309 45 1 5.9725 0.7043 1.9888 46 1 5.1386 2.0480 2.8280 47 1 8.0528 1.6390 2.3356 48 1 7.2445 2.6430 3.5691 49 1 6.9408 4.8217 3.2856 50 1 7.7350 5.6473 1.9234 51 1 8.9349 6.3716 4.2254 52 1 9.5291 7.6151 5.3243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272005142.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:48 Heat of formation + Delta-G solvation = -63.301646 kcal Electronic energy + Delta-G solvation = -30773.247087 eV Core-core repulsion = 26772.570004 eV Total energy + Delta-G solvation = -4000.677083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.39789 -39.49450 -37.97307 -36.14796 -35.79155 -34.21711 -33.52908 -31.51849 -30.96114 -29.94610 -29.28505 -26.71524 -26.04679 -24.83002 -23.99312 -22.93214 -22.17286 -21.15476 -20.02257 -19.19034 -18.57967 -17.86265 -17.63704 -16.45634 -16.32240 -16.06152 -15.69378 -15.51659 -14.92494 -14.65603 -14.38737 -14.27699 -14.01755 -13.78382 -13.75231 -13.62827 -13.46281 -13.12753 -12.77429 -12.69038 -12.36254 -12.29352 -12.11687 -12.02328 -11.87075 -11.76362 -11.54111 -11.22144 -11.20203 -11.13675 -11.06405 -11.03599 -10.92440 -10.58513 -10.45591 -10.21758 -9.85393 -9.80466 -9.51526 -8.81288 -8.48594 -8.00904 -7.92857 -6.73394 -3.86203 2.39053 2.70021 3.32733 3.35550 3.54990 3.86111 3.94890 4.05377 4.29445 4.34037 4.44161 4.47514 4.51961 4.56629 4.59521 4.78213 4.88284 4.98249 4.99528 5.03558 5.09904 5.15638 5.17901 5.24245 5.27183 5.29487 5.32346 5.39652 5.48780 5.53997 5.58819 5.59921 5.63071 5.68384 5.70957 5.79146 5.82267 5.87660 5.95496 5.98371 6.03272 6.11418 6.18406 6.42217 6.50289 7.05714 7.18480 7.21122 7.84119 7.97566 8.10760 8.62941 8.83633 9.50329 9.91886 10.70311 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028860 B = 0.002272 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.973454 B =12320.785819 C =12750.985210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.111 4.111 4 H 0.092 0.908 5 C -0.149 4.149 6 C 0.509 3.491 7 O -0.533 6.533 8 N -0.594 5.594 9 C 0.098 3.902 10 C -0.128 4.128 11 C -0.148 4.148 12 C 0.076 3.924 13 H 0.091 0.909 14 C 0.145 3.855 15 H 0.095 0.905 16 C -0.150 4.150 17 C 0.060 3.940 18 N -0.497 5.497 19 C 0.042 3.958 20 C 0.446 3.554 21 O -0.568 6.568 22 N -0.579 5.579 23 C -0.379 4.379 24 H 0.099 0.901 25 C -0.011 4.011 26 N -0.904 5.904 27 Si 1.095 2.905 28 H -0.284 1.284 29 H -0.284 1.284 30 H -0.285 1.285 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.085 0.915 48 H 0.055 0.945 49 H 0.051 0.949 50 H 0.089 0.911 51 H 0.374 0.626 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.195 -5.927 -11.901 26.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.133 4.133 4 H 0.111 0.889 5 C -0.206 4.206 6 C 0.297 3.703 7 O -0.409 6.409 8 N -0.326 5.326 9 C -0.024 4.024 10 C -0.167 4.167 11 C -0.186 4.186 12 C -0.033 4.033 13 H 0.109 0.891 14 C 0.041 3.959 15 H 0.113 0.887 16 C -0.190 4.190 17 C -0.068 4.068 18 N -0.220 5.220 19 C -0.090 4.090 20 C 0.231 3.769 21 O -0.451 6.451 22 N -0.218 5.218 23 C -0.508 4.508 24 H 0.117 0.883 25 C -0.213 4.213 26 N -0.544 5.544 27 Si 0.922 3.078 28 H -0.209 1.209 29 H -0.210 1.210 30 H -0.211 1.211 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.104 0.896 48 H 0.074 0.926 49 H 0.068 0.932 50 H 0.107 0.893 51 H 0.207 0.793 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.815 -6.422 -11.373 24.573 hybrid contribution -2.141 0.056 -0.335 2.167 sum -22.955 -6.366 -11.708 26.544 Atomic orbital electron populations 1.21828 0.95384 1.01960 1.01836 1.21363 0.95445 0.94084 1.03493 1.21396 0.91872 0.99463 1.00525 0.88942 1.21933 1.02222 1.00519 0.95914 1.20849 0.90295 0.82944 0.76256 1.90696 1.68512 1.33036 1.48642 1.46929 1.07489 1.10721 1.67488 1.21634 0.93995 0.84882 1.01887 1.21819 0.96777 0.96929 1.01136 1.22208 0.96571 1.00019 0.99844 1.22234 0.89404 0.93151 0.98550 0.89071 1.20924 0.79664 0.96714 0.98629 0.88714 1.23034 0.97970 1.01626 0.96383 1.22568 0.95264 0.92702 0.96249 1.63162 1.36302 1.02806 1.19706 1.22119 0.96739 0.94207 0.95895 1.19719 0.88289 0.85281 0.83610 1.90534 1.57446 1.31578 1.65506 1.41938 1.19625 1.19446 1.40788 1.20595 0.96137 1.09113 1.24988 0.88277 1.26486 1.05917 0.92171 0.96756 1.70849 1.12397 1.28310 1.42843 0.83057 0.72964 0.75908 0.75887 1.20923 1.21030 1.21080 0.92431 0.92735 0.92422 0.90923 0.91557 0.91700 0.91060 0.91641 0.92073 0.89282 0.90002 0.90871 0.91311 0.90169 0.90238 0.91844 0.89632 0.92622 0.93156 0.89273 0.79300 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.67 37.16 0.36 -0.50 16 2 C -0.11 -0.84 4.77 -26.73 -0.13 -0.96 16 3 C -0.11 -0.84 1.88 -91.77 -0.17 -1.01 16 4 H 0.09 0.56 7.33 -51.93 -0.38 0.18 16 5 C -0.15 -0.86 8.35 37.16 0.31 -0.55 16 6 C 0.51 5.72 6.57 -10.99 -0.07 5.64 16 7 O -0.53 -8.05 15.43 5.56 0.09 -7.96 16 8 N -0.59 -6.18 2.84 -168.21 -0.48 -6.66 16 9 C 0.10 0.72 5.27 -4.75 -0.03 0.70 16 10 C -0.13 -0.94 6.13 -26.59 -0.16 -1.11 16 11 C -0.15 -1.52 3.98 -26.81 -0.11 -1.63 16 12 C 0.08 0.97 3.25 -67.75 -0.22 0.75 16 13 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 14 C 0.15 1.87 2.69 -68.63 -0.18 1.68 16 15 H 0.09 1.40 7.38 -51.93 -0.38 1.02 16 16 C -0.15 -2.08 6.36 -25.56 -0.16 -2.24 16 17 C 0.06 1.01 5.66 -3.19 -0.02 0.99 16 18 N -0.50 -8.35 4.83 -227.20 -1.10 -9.44 16 19 C 0.04 0.73 3.97 -4.98 -0.02 0.71 16 20 C 0.45 10.60 7.43 -10.99 -0.08 10.52 16 21 O -0.57 -15.71 15.12 5.55 0.08 -15.62 16 22 N -0.58 -14.61 5.28 -10.96 -0.06 -14.67 16 23 C -0.38 -10.73 9.68 -14.93 -0.14 -10.87 16 24 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 25 C -0.01 -0.31 5.50 -17.47 -0.10 -0.41 16 26 N -0.90 -25.39 13.68 55.50 0.76 -24.64 16 27 Si 1.10 24.63 29.92 -169.99 -5.09 19.54 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 30 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.27 6.73 -51.92 -0.35 -0.07 16 34 H 0.07 0.65 8.06 -51.93 -0.42 0.24 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.29 6.92 -51.93 -0.36 -0.07 16 38 H 0.06 0.34 5.80 -51.93 -0.30 0.04 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.47 4.10 -51.93 -0.21 0.26 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 43 H 0.07 0.76 7.18 -51.93 -0.37 0.39 16 44 H 0.08 0.82 6.50 -51.93 -0.34 0.49 16 45 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.06 0.84 8.12 -51.93 -0.42 0.41 16 47 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 48 H 0.06 1.00 7.30 -51.93 -0.38 0.62 16 49 H 0.05 0.80 6.74 -51.93 -0.35 0.45 16 50 H 0.09 1.40 6.71 -51.93 -0.35 1.05 16 51 H 0.37 8.68 6.73 -40.82 -0.27 8.40 16 52 H 0.26 7.02 6.78 -40.82 -0.28 6.74 16 LS Contribution 390.51 15.07 5.88 5.88 Total: -1.00 -34.42 390.51 -9.39 -43.81 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -8.56 Total: 8.04 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.92 Total: 1.72 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.87 Total: -55.41 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.17 Total: -23.58 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.09 Total: 19.54 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.42 -9.39 -43.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272005142.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.492 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds