Wall clock time and date at job start Tue Mar 31 2020 20:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47091 * 2 1 4 4 H 1.09003 * 109.47040 * 55.00085 * 3 2 1 5 5 C 1.52995 * 109.47164 * 294.99927 * 3 2 1 6 6 C 1.50704 * 109.47010 * 174.99466 * 3 2 1 7 7 O 1.21279 * 119.99677 * 19.15258 * 6 3 2 8 8 N 1.34770 * 119.99905 * 199.14652 * 6 3 2 9 9 C 1.45193 * 116.74585 * 354.69007 * 8 6 3 10 10 C 1.52981 * 110.52216 * 207.68741 * 9 8 6 11 11 C 1.53294 * 107.94868 * 308.70618 * 10 9 8 12 12 C 1.52541 * 108.88058 * 68.33668 * 11 10 9 13 13 H 1.09004 * 109.62208 * 64.94682 * 12 11 10 14 14 C 1.44078 * 116.74318 * 174.68814 * 8 6 3 15 15 H 1.09004 * 108.71481 * 40.52865 * 14 8 6 16 16 C 1.54367 * 110.56829 * 280.70828 * 14 8 6 17 17 C 1.53874 * 104.30012 * 208.67584 * 16 14 8 18 18 N 1.47227 * 107.71631 * 16.82576 * 17 16 14 19 19 C 1.46899 * 111.00024 * 123.35554 * 18 17 16 20 20 C 1.50700 * 109.47204 * 69.87075 * 19 18 17 21 21 O 1.21292 * 120.00149 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99646 * 180.02562 * 20 19 18 23 23 C 1.37101 * 120.00062 * 179.97438 * 22 20 19 24 24 H 1.08000 * 119.99570 * 0.02562 * 23 22 20 25 25 C 1.38947 * 120.00269 * 179.97438 * 23 22 20 26 26 N 1.31415 * 120.00054 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00166 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47125 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47330 * 119.99742 * 27 25 23 30 30 H 1.48497 * 109.47500 * 239.99840 * 27 25 23 31 31 H 1.09002 * 109.47010 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47546 * 300.00162 * 1 2 3 33 33 H 1.09007 * 109.46760 * 60.00400 * 1 2 3 34 34 H 1.08998 * 109.47546 * 239.99838 * 2 1 3 35 35 H 1.09000 * 109.47130 * 119.99733 * 2 1 3 36 36 H 1.09005 * 109.46951 * 307.04176 * 5 3 2 37 37 H 1.08997 * 109.47135 * 67.03826 * 5 3 2 38 38 H 1.08997 * 109.47057 * 187.04590 * 5 3 2 39 39 H 1.09001 * 109.26682 * 87.41431 * 9 8 6 40 40 H 1.09005 * 109.23886 * 327.94124 * 9 8 6 41 41 H 1.09000 * 109.77025 * 189.09146 * 10 9 8 42 42 H 1.09005 * 109.81054 * 68.34054 * 10 9 8 43 43 H 1.09000 * 109.56467 * 308.51702 * 11 10 9 44 44 H 1.08999 * 109.56769 * 188.15958 * 11 10 9 45 45 H 1.08994 * 110.47045 * 89.96836 * 16 14 8 46 46 H 1.09005 * 110.57314 * 327.42944 * 16 14 8 47 47 H 1.09000 * 109.80708 * 257.27146 * 17 16 14 48 48 H 1.09000 * 109.81019 * 136.37949 * 17 16 14 49 49 H 1.09000 * 109.46800 * 309.86731 * 19 18 17 50 50 H 1.08997 * 109.46872 * 189.87483 * 19 18 17 51 51 H 0.97008 * 120.00355 * 359.97438 * 22 20 19 52 52 H 0.97006 * 119.99695 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5419 1.4443 0.1240 7 8 4.1734 0.4432 -0.1406 8 7 4.1833 2.5584 0.5287 9 6 3.3727 3.7489 0.7120 10 6 4.2121 5.0086 0.4907 11 6 5.4728 4.8942 1.3553 12 6 6.3529 3.7792 0.7996 13 1 6.7041 4.0517 -0.1957 14 6 5.6049 2.4489 0.7362 15 1 6.0285 1.8370 -0.0603 16 6 5.9048 1.7867 2.0980 17 6 7.2658 2.3718 2.5136 18 7 7.5066 3.5715 1.6949 19 6 7.7345 4.7499 2.5420 20 6 9.0647 4.6186 3.2379 21 8 9.7548 3.6395 3.0474 22 7 9.4870 5.5887 4.0728 23 6 10.6970 5.4691 4.7064 24 1 11.3118 4.5977 4.5361 25 6 11.1326 6.4694 5.5666 26 7 10.3852 7.5305 5.7726 27 14 12.7808 6.3061 6.4304 28 1 13.4237 5.0279 6.0326 29 1 13.6564 7.4420 6.0451 30 1 12.5726 6.3183 7.9007 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.9633 1.5200 -2.1515 37 1 0.5514 2.2373 -1.3390 38 1 2.1028 3.1096 -1.3629 39 1 2.9708 3.7579 1.7252 40 1 2.5487 3.7358 -0.0014 41 1 3.6411 5.8888 0.7862 42 1 4.4916 5.0864 -0.5600 43 1 5.1912 4.6598 2.3819 44 1 6.0190 5.8371 1.3309 45 1 5.9725 0.7043 1.9888 46 1 5.1386 2.0480 2.8280 47 1 8.0528 1.6390 2.3356 48 1 7.2445 2.6430 3.5691 49 1 6.9408 4.8217 3.2856 50 1 7.7350 5.6473 1.9234 51 1 8.9349 6.3716 4.2254 52 1 9.5291 7.6151 5.3243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272005142.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:47 Heat of formation + Delta-G solvation = -87.710148 kcal Electronic energy + Delta-G solvation = -30774.305519 eV Core-core repulsion = 26772.570004 eV Total energy + Delta-G solvation = -4001.735515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.35694 -40.75341 -39.63270 -37.16559 -36.53768 -36.21675 -34.46752 -33.18882 -32.42466 -30.76243 -30.14489 -28.22244 -26.74120 -26.16050 -25.34720 -23.75565 -22.99072 -22.54181 -21.18597 -20.55647 -19.93205 -19.41102 -18.48974 -18.05148 -17.40221 -17.19916 -16.84735 -16.43912 -16.23624 -15.82448 -15.61245 -15.51390 -15.37878 -15.04201 -14.84164 -14.73224 -14.22888 -14.08679 -13.97097 -13.53395 -13.47323 -13.33250 -13.31161 -12.97604 -12.90195 -12.76973 -12.63802 -12.54229 -12.39665 -12.19676 -11.97880 -11.90883 -11.87946 -11.74299 -11.69557 -11.60252 -11.51521 -11.42746 -10.66607 -10.38588 -10.09502 -9.69354 -9.30356 -8.92780 -6.06229 1.51842 1.52895 1.54192 1.80385 1.84948 2.00997 2.38612 2.70259 3.11460 3.16640 3.28897 3.52159 3.57416 3.76402 3.80882 3.88254 3.91197 3.96108 4.02211 4.07467 4.19630 4.26388 4.29766 4.36833 4.39799 4.48123 4.51099 4.56543 4.57693 4.60450 4.73175 4.78406 4.81486 4.90840 4.94660 5.00826 5.03050 5.05964 5.10761 5.16276 5.19878 5.31390 5.38144 5.47267 5.56543 5.61686 5.83722 5.96125 6.00181 6.29424 6.58516 6.76072 7.12906 7.44526 7.94660 8.55360 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028860 B = 0.002272 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.973454 B =12320.785819 C =12750.985210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.104 4.104 4 H 0.118 0.882 5 C -0.146 4.146 6 C 0.501 3.499 7 O -0.582 6.582 8 N -0.590 5.590 9 C 0.090 3.910 10 C -0.120 4.120 11 C -0.146 4.146 12 C 0.080 3.920 13 H 0.093 0.907 14 C 0.155 3.845 15 H 0.067 0.933 16 C -0.137 4.137 17 C 0.066 3.934 18 N -0.522 5.522 19 C 0.060 3.940 20 C 0.441 3.559 21 O -0.613 6.613 22 N -0.587 5.587 23 C -0.407 4.407 24 H 0.069 0.931 25 C -0.042 4.042 26 N -0.917 5.917 27 Si 1.136 2.864 28 H -0.283 1.283 29 H -0.270 1.270 30 H -0.271 1.271 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.054 0.946 48 H 0.040 0.960 49 H 0.075 0.925 50 H 0.116 0.884 51 H 0.385 0.615 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.278 -3.728 -12.228 29.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.125 4.125 4 H 0.136 0.864 5 C -0.203 4.203 6 C 0.291 3.709 7 O -0.462 6.462 8 N -0.322 5.322 9 C -0.031 4.031 10 C -0.158 4.158 11 C -0.185 4.185 12 C -0.029 4.029 13 H 0.111 0.889 14 C 0.049 3.951 15 H 0.085 0.915 16 C -0.177 4.177 17 C -0.062 4.062 18 N -0.246 5.246 19 C -0.071 4.071 20 C 0.229 3.771 21 O -0.498 6.498 22 N -0.227 5.227 23 C -0.537 4.537 24 H 0.087 0.913 25 C -0.240 4.240 26 N -0.556 5.556 27 Si 0.957 3.043 28 H -0.208 1.208 29 H -0.196 1.196 30 H -0.196 1.196 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.059 0.941 49 H 0.093 0.907 50 H 0.134 0.866 51 H 0.219 0.781 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.961 -4.172 -11.712 26.995 hybrid contribution -1.184 -0.700 -0.294 1.406 sum -25.145 -4.872 -12.005 28.286 Atomic orbital electron populations 1.21791 0.93157 1.02397 1.03036 1.21345 0.97275 0.94195 1.01648 1.21455 0.88719 0.99661 1.02628 0.86414 1.21950 1.03910 1.00379 0.94014 1.21655 0.91907 0.82248 0.75101 1.90679 1.69802 1.34905 1.50805 1.47016 1.06391 1.11928 1.66821 1.21986 0.94137 0.83316 1.03623 1.21828 0.95369 0.97949 1.00699 1.22186 0.97562 0.98615 1.00087 1.22245 0.88642 0.94212 0.97755 0.88911 1.20585 0.81542 0.96162 0.96784 0.91459 1.22872 0.96553 1.00765 0.97464 1.22365 0.95909 0.92517 0.95436 1.63018 1.39218 1.02418 1.19906 1.21967 0.93186 0.95468 0.96487 1.20900 0.89925 0.83822 0.82460 1.90510 1.59420 1.33213 1.66655 1.41962 1.19166 1.20338 1.41222 1.20525 0.97563 1.08835 1.26741 0.91287 1.27765 1.08351 0.91291 0.96631 1.70913 1.12778 1.28644 1.43269 0.82567 0.69767 0.76297 0.75694 1.20841 1.19562 1.19600 0.92530 0.91586 0.91027 0.92864 0.93514 0.93141 0.88502 0.90541 0.90684 0.86570 0.87102 0.90503 0.91664 0.89632 0.91480 0.90542 0.92801 0.94119 0.90732 0.86565 0.78090 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.67 71.98 0.70 -0.60 16 2 C -0.11 -1.59 4.77 30.60 0.15 -1.44 16 3 C -0.10 -1.32 1.88 -11.54 -0.02 -1.34 16 4 H 0.12 0.94 7.33 -2.39 -0.02 0.93 16 5 C -0.15 -1.20 8.35 71.98 0.60 -0.60 16 6 C 0.50 10.84 6.57 87.66 0.58 11.41 16 7 O -0.58 -18.28 15.43 -3.03 -0.05 -18.32 16 8 N -0.59 -11.25 2.84 -804.50 -2.29 -13.54 16 9 C 0.09 0.95 5.27 86.62 0.46 1.40 16 10 C -0.12 -1.23 6.13 30.69 0.19 -1.05 16 11 C -0.15 -2.54 3.98 30.54 0.12 -2.41 16 12 C 0.08 1.96 3.25 44.56 0.14 2.11 16 13 H 0.09 2.27 8.14 -2.38 -0.02 2.26 16 14 C 0.16 3.96 2.69 45.82 0.12 4.08 16 15 H 0.07 2.09 7.38 -2.39 -0.02 2.08 16 16 C -0.14 -3.88 6.36 31.35 0.20 -3.68 16 17 C 0.07 2.31 5.66 86.54 0.49 2.80 16 18 N -0.52 -17.63 4.83 -872.72 -4.22 -21.85 16 19 C 0.06 2.05 3.97 85.56 0.34 2.39 16 20 C 0.44 21.39 7.43 87.66 0.65 22.04 16 21 O -0.61 -35.34 15.12 -3.07 -0.05 -35.39 16 22 N -0.59 -30.04 5.28 -306.99 -1.62 -31.67 16 23 C -0.41 -23.61 9.68 84.04 0.81 -22.80 16 24 H 0.07 4.36 7.16 -2.91 -0.02 4.34 16 25 C -0.04 -2.31 5.50 84.93 0.47 -1.84 16 26 N -0.92 -50.96 13.68 21.66 0.30 -50.66 16 27 Si 1.14 49.36 29.92 68.60 2.05 51.42 16 28 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 29 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 30 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.07 0.44 6.73 -2.38 -0.02 0.43 16 34 H 0.05 0.98 8.06 -2.39 -0.02 0.96 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.10 0.35 6.92 -2.39 -0.02 0.33 16 38 H 0.08 0.47 5.80 -2.39 -0.01 0.46 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.12 0.64 4.10 -2.38 -0.01 0.63 16 41 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.08 0.79 8.12 -2.38 -0.02 0.77 16 43 H 0.06 1.21 7.18 -2.39 -0.02 1.20 16 44 H 0.09 1.43 6.50 -2.39 -0.02 1.42 16 45 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.08 1.96 8.12 -2.38 -0.02 1.94 16 47 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.04 1.51 7.30 -2.39 -0.02 1.50 16 49 H 0.07 2.23 6.74 -2.39 -0.02 2.21 16 50 H 0.12 3.37 6.71 -2.39 -0.02 3.35 16 51 H 0.38 17.81 6.73 -92.70 -0.62 17.19 16 52 H 0.26 13.91 6.78 -92.70 -0.63 13.28 16 Total: -1.00 -79.30 390.51 0.56 -78.74 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.44 Total: 30.80 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 5.99 Total: 10.48 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -7.83 Total: -117.72 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: -0.09 Total: -53.72 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.05 Total: 51.42 kcal Total: -79.30 0.56 -78.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272005142.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.969 kcal (2) G-P(sol) polarization free energy of solvation -79.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds