Wall clock time and date at job start Tue Mar 31 2020 20:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46929 * 2 1 4 4 H 1.08992 * 109.47191 * 55.00554 * 3 2 1 5 5 C 1.52998 * 109.47111 * 295.00427 * 3 2 1 6 6 C 1.50697 * 109.47087 * 175.00408 * 3 2 1 7 7 O 1.21281 * 120.00286 * 17.61525 * 6 3 2 8 8 N 1.34771 * 120.00193 * 197.61875 * 6 3 2 9 9 C 1.45658 * 117.32702 * 354.50980 * 8 6 3 10 10 C 1.53298 * 108.65068 * 154.41388 * 9 8 6 11 11 C 1.52721 * 107.74522 * 58.30324 * 10 9 8 12 12 C 1.51392 * 111.49264 * 294.61936 * 11 10 9 13 13 H 1.08993 * 107.92617 * 274.31525 * 12 11 10 14 14 C 1.43771 * 117.33420 * 174.53225 * 8 6 3 15 15 H 1.09004 * 107.31062 * 297.99659 * 14 8 6 16 16 C 1.54814 * 110.55439 * 55.25479 * 14 8 6 17 17 C 1.55256 * 102.16085 * 151.51065 * 16 14 8 18 18 N 1.48425 * 109.50695 * 156.58606 * 12 11 10 19 19 C 1.46901 * 110.99778 * 88.67366 * 18 12 11 20 20 C 1.50701 * 109.47160 * 186.64009 * 19 18 12 21 21 O 1.21288 * 119.99892 * 0.02562 * 20 19 18 22 22 N 1.34772 * 120.00151 * 179.97438 * 20 19 18 23 23 C 1.37100 * 120.00055 * 179.97438 * 22 20 19 24 24 H 1.08001 * 120.00046 * 0.02562 * 23 22 20 25 25 C 1.38951 * 119.99860 * 180.02562 * 23 22 20 26 26 N 1.31411 * 119.99903 * 180.02562 * 25 23 22 27 27 Si 1.86803 * 119.99940 * 0.02562 * 25 23 22 28 28 H 1.48494 * 109.47026 * 90.00188 * 27 25 23 29 29 H 1.48503 * 109.46761 * 210.00242 * 27 25 23 30 30 H 1.48496 * 109.47398 * 329.99609 * 27 25 23 31 31 H 1.08996 * 109.46810 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47025 * 299.99365 * 1 2 3 33 33 H 1.08997 * 109.47712 * 59.99645 * 1 2 3 34 34 H 1.09005 * 109.47025 * 240.00635 * 2 1 3 35 35 H 1.08997 * 109.47712 * 120.00355 * 2 1 3 36 36 H 1.08996 * 109.47365 * 306.48853 * 5 3 2 37 37 H 1.08998 * 109.47438 * 66.49273 * 5 3 2 38 38 H 1.09004 * 109.47245 * 186.49276 * 5 3 2 39 39 H 1.08995 * 109.60374 * 34.65978 * 9 8 6 40 40 H 1.09007 * 109.74203 * 274.24275 * 9 8 6 41 41 H 1.08997 * 109.80761 * 298.74001 * 10 9 8 42 42 H 1.09003 * 109.80228 * 177.85882 * 10 9 8 43 43 H 1.08995 * 109.08075 * 174.10318 * 11 10 9 44 44 H 1.08999 * 109.08063 * 55.13637 * 11 10 9 45 45 H 1.09004 * 110.86047 * 33.34547 * 16 14 8 46 46 H 1.09001 * 110.86403 * 269.67725 * 16 14 8 47 47 H 1.09000 * 110.77203 * 202.70778 * 17 16 14 48 48 H 1.08997 * 110.77317 * 79.28349 * 17 16 14 49 49 H 1.09008 * 109.47015 * 306.63955 * 19 18 12 50 50 H 1.09000 * 109.47215 * 66.63755 * 19 18 12 51 51 H 0.96997 * 119.99920 * 0.02562 * 22 20 19 52 52 H 0.97002 * 120.00123 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5418 1.4444 0.1237 7 8 4.1712 0.4353 -0.1141 8 7 4.1857 2.5674 0.4987 9 6 3.3879 3.7765 0.6509 10 6 4.0931 4.7074 1.6440 11 6 5.4872 5.0033 1.0951 12 6 6.3438 3.7557 1.0545 13 1 6.8094 3.6365 2.0328 14 6 5.6040 2.4741 0.7153 15 1 5.7618 1.7690 1.5315 16 6 6.3096 1.9077 -0.5409 17 6 7.7193 2.5506 -0.4420 18 7 7.4176 3.9244 0.0439 19 6 8.6082 4.5454 0.6395 20 6 9.6113 4.8493 -0.4434 21 8 9.3589 4.5759 -1.5978 22 7 10.7882 5.4258 -0.1292 23 6 11.7010 5.7018 -1.1143 24 1 11.4766 5.4576 -2.1422 25 6 12.9147 6.2957 -0.7903 26 7 13.7893 6.5607 -1.7346 27 14 13.3030 6.7174 0.9876 28 1 13.9784 5.5636 1.6338 29 1 14.1969 7.9024 1.0313 30 1 12.0423 7.0217 1.7109 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.9717 1.5250 -2.1516 37 1 0.5505 2.2286 -1.3433 38 1 2.0947 3.1137 -1.3584 39 1 2.3998 3.5172 1.0309 40 1 3.2897 4.2765 -0.3127 41 1 4.1746 4.2184 2.6147 42 1 3.5306 5.6357 1.7432 43 1 5.9699 5.7462 1.7301 44 1 5.3950 5.4050 0.0860 45 1 5.7999 2.2276 -1.4498 46 1 6.3744 0.8207 -0.4928 47 1 8.1989 2.5832 -1.4203 48 1 8.3394 2.0141 0.2761 49 1 8.3232 5.4705 1.1408 50 1 9.0511 3.8614 1.3635 51 1 10.9899 5.6448 0.7940 52 1 14.6364 6.9756 -1.5085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272005143.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:50 Heat of formation + Delta-G solvation = -84.927618 kcal Electronic energy + Delta-G solvation = -30705.836193 eV Core-core repulsion = 26704.221337 eV Total energy + Delta-G solvation = -4001.614856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.15563 -40.58504 -39.49234 -37.16662 -36.44734 -35.93271 -34.30600 -33.76711 -32.62084 -30.60199 -30.06564 -28.32751 -26.58982 -25.88060 -25.45238 -23.54191 -22.88414 -22.44022 -21.28774 -20.48456 -20.27337 -19.22208 -18.43891 -17.73862 -17.17559 -17.09999 -16.77600 -16.46697 -16.12344 -15.86047 -15.62498 -15.37486 -15.11384 -15.02503 -14.71709 -14.50866 -14.40170 -14.17111 -14.03402 -13.84825 -13.59485 -13.28848 -13.12332 -13.01052 -12.79978 -12.63701 -12.57972 -12.47355 -12.41712 -12.24678 -12.23430 -11.98227 -11.95121 -11.64498 -11.60072 -11.56909 -11.49537 -11.45899 -10.51288 -10.40691 -10.25241 -9.63703 -9.39569 -8.41739 -6.02721 1.28982 1.34887 1.43820 1.61780 1.94990 1.97959 2.22433 2.55301 3.12030 3.14465 3.32245 3.60470 3.65545 3.82406 3.86820 3.95166 4.01069 4.03320 4.13405 4.15314 4.27239 4.29034 4.34836 4.41071 4.45060 4.51140 4.55286 4.62742 4.65161 4.75371 4.85677 4.91334 4.92710 4.96740 4.98588 5.02549 5.07188 5.13868 5.15780 5.18770 5.22607 5.39058 5.39754 5.50849 5.52397 5.70364 5.80980 5.90190 6.01012 6.38154 6.59209 6.87909 7.20666 7.38955 7.96912 8.76028 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027807 B = 0.002351 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.698151 B =11907.619169 C =12305.315698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.102 4.102 4 H 0.125 0.875 5 C -0.144 4.144 6 C 0.500 3.500 7 O -0.578 6.578 8 N -0.592 5.592 9 C 0.098 3.902 10 C -0.119 4.119 11 C -0.110 4.110 12 C 0.072 3.928 13 H 0.071 0.929 14 C 0.160 3.840 15 H 0.064 0.936 16 C -0.109 4.109 17 C 0.038 3.962 18 N -0.506 5.506 19 C 0.046 3.954 20 C 0.452 3.548 21 O -0.607 6.607 22 N -0.592 5.592 23 C -0.327 4.327 24 H 0.053 0.947 25 C -0.017 4.017 26 N -0.935 5.935 27 Si 0.966 3.034 28 H -0.258 1.258 29 H -0.274 1.274 30 H -0.229 1.229 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.110 0.890 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.050 0.950 49 H 0.124 0.876 50 H 0.081 0.919 51 H 0.389 0.611 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.477 -5.383 15.613 33.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.122 4.122 4 H 0.142 0.858 5 C -0.202 4.202 6 C 0.289 3.711 7 O -0.457 6.457 8 N -0.324 5.324 9 C -0.023 4.023 10 C -0.157 4.157 11 C -0.149 4.149 12 C -0.036 4.036 13 H 0.089 0.911 14 C 0.054 3.946 15 H 0.082 0.918 16 C -0.148 4.148 17 C -0.091 4.091 18 N -0.231 5.231 19 C -0.086 4.086 20 C 0.240 3.760 21 O -0.491 6.491 22 N -0.234 5.234 23 C -0.456 4.456 24 H 0.071 0.929 25 C -0.216 4.216 26 N -0.576 5.576 27 Si 0.786 3.214 28 H -0.183 1.183 29 H -0.199 1.199 30 H -0.152 1.152 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.131 0.869 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.128 0.872 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.068 0.932 49 H 0.142 0.858 50 H 0.098 0.902 51 H 0.225 0.775 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -29.252 -5.611 14.244 33.016 hybrid contribution 1.823 -0.374 0.534 1.936 sum -27.429 -5.985 14.778 31.727 Atomic orbital electron populations 1.21792 0.93275 1.02363 1.02981 1.21337 0.97157 0.94133 1.01702 1.21435 0.89023 0.99577 1.02200 0.85777 1.21860 1.03668 1.00287 0.94360 1.21557 0.91777 0.82329 0.75408 1.90666 1.69700 1.34788 1.50580 1.47155 1.06474 1.10958 1.67822 1.22024 0.95343 0.84458 1.00476 1.21783 0.94635 1.00866 0.98407 1.21153 0.95890 0.95458 1.02361 1.21854 0.92657 0.94856 0.94263 0.91070 1.20388 0.81106 0.96206 0.96890 0.91801 1.22812 0.94129 0.99961 0.97934 1.23262 0.96912 0.88361 1.00521 1.64814 1.06837 1.19042 1.32429 1.22039 0.90251 1.02464 0.93802 1.20816 0.83119 0.81450 0.90602 1.90542 1.78403 1.56805 1.23362 1.42009 1.15664 1.56737 1.08978 1.18974 0.96920 1.39480 0.90209 0.92895 1.26144 0.94600 0.96295 1.04527 1.69810 1.09028 1.43053 1.35706 0.85350 0.80256 0.79068 0.76748 1.18283 1.19946 1.15234 0.92507 0.91242 0.91508 0.93328 0.92885 0.93884 0.88616 0.91514 0.86896 0.91366 0.90268 0.87193 0.90137 0.92282 0.92923 0.90714 0.92211 0.93178 0.85839 0.90172 0.77504 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 71.98 0.70 -0.62 16 2 C -0.11 -1.57 4.76 30.59 0.15 -1.43 16 3 C -0.10 -1.36 1.90 -11.54 -0.02 -1.38 16 4 H 0.12 0.90 6.43 -2.39 -0.02 0.88 16 5 C -0.14 -1.66 8.64 71.98 0.62 -1.04 16 6 C 0.50 10.98 6.51 87.66 0.57 11.55 16 7 O -0.58 -17.80 13.93 -3.03 -0.04 -17.85 16 8 N -0.59 -11.58 3.00 -804.29 -2.41 -13.99 16 9 C 0.10 1.13 4.94 86.64 0.43 1.56 16 10 C -0.12 -1.19 6.08 30.60 0.19 -1.00 16 11 C -0.11 -1.91 5.38 29.98 0.16 -1.75 16 12 C 0.07 1.61 2.52 43.70 0.11 1.72 16 13 H 0.07 1.35 7.73 -2.39 -0.02 1.34 16 14 C 0.16 3.84 2.76 45.73 0.13 3.97 16 15 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 16 C -0.11 -3.39 5.27 31.99 0.17 -3.22 16 17 C 0.04 1.30 5.88 86.71 0.51 1.81 16 18 N -0.51 -16.11 4.56 -867.13 -3.95 -20.06 16 19 C 0.05 1.45 5.13 85.56 0.44 1.89 16 20 C 0.45 20.96 7.58 87.66 0.66 21.63 16 21 O -0.61 -34.72 14.42 -3.06 -0.04 -34.76 16 22 N -0.59 -28.33 5.09 -306.99 -1.56 -29.90 16 23 C -0.33 -19.44 10.16 84.04 0.85 -18.58 16 24 H 0.05 3.77 7.39 -2.91 -0.02 3.74 16 25 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 26 N -0.94 -57.09 13.96 21.66 0.30 -56.79 16 27 Si 0.97 38.99 27.74 68.60 1.90 40.90 16 28 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 29 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 30 H -0.23 -7.69 6.52 99.48 0.65 -7.05 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.07 0.49 6.71 -2.39 -0.02 0.48 16 34 H 0.05 0.94 8.07 -2.38 -0.02 0.92 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.10 0.62 6.89 -2.39 -0.02 0.60 16 38 H 0.07 0.74 6.02 -2.38 -0.01 0.73 16 39 H 0.11 0.60 5.82 -2.39 -0.01 0.59 16 40 H 0.07 0.84 7.08 -2.38 -0.02 0.83 16 41 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 1.32 8.06 -2.39 -0.02 1.30 16 45 H 0.05 1.82 8.13 -2.38 -0.02 1.80 16 46 H 0.07 2.45 7.15 -2.39 -0.02 2.43 16 47 H 0.06 2.58 6.91 -2.39 -0.02 2.56 16 48 H 0.05 1.60 7.88 -2.39 -0.02 1.58 16 49 H 0.12 3.11 8.06 -2.38 -0.02 3.09 16 50 H 0.08 2.12 7.91 -2.39 -0.02 2.10 16 51 H 0.39 15.31 5.76 -92.71 -0.53 14.78 16 52 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -84.10 391.57 0.64 -83.46 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: 0.32 Total: 34.41 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 6.13 Total: 14.59 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -7.63 Total: -120.74 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: -0.09 Total: -52.61 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.90 Total: 40.90 kcal Total: -84.10 0.64 -83.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272005143.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.470 kcal (2) G-P(sol) polarization free energy of solvation -84.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds