Wall clock time and date at job start Tue Mar 31 2020 19:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46971 * 2 1 4 4 H 1.09007 * 115.56005 * 29.30880 * 3 2 1 5 5 C 1.52999 * 117.50239 * 243.62033 * 3 2 1 6 6 C 1.52997 * 60.00105 * 252.50979 * 5 3 2 7 7 H 1.08997 * 117.49942 * 107.51173 * 6 5 3 8 8 C 1.50703 * 117.49803 * 252.50777 * 6 5 3 9 9 O 1.21291 * 119.99991 * 68.60822 * 8 6 5 10 10 N 1.34769 * 120.00160 * 248.61053 * 8 6 5 11 11 C 1.47020 * 125.65173 * 0.04141 * 10 8 6 12 12 C 1.54364 * 107.29387 * 181.05710 * 11 10 8 13 13 C 1.55157 * 102.92001 * 22.13993 * 12 11 10 14 14 H 1.08999 * 111.01029 * 82.63687 * 13 12 11 15 15 C 1.52999 * 111.00352 * 206.45568 * 13 12 11 16 16 C 1.52998 * 109.47264 * 290.41314 * 15 13 12 17 17 N 1.46896 * 109.47624 * 180.02562 * 16 15 13 18 18 C 1.46899 * 111.00338 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.46987 * 179.97438 * 18 17 16 20 20 O 1.21293 * 120.00006 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99773 * 179.72591 * 21 19 18 23 23 H 1.08002 * 119.99671 * 0.27660 * 22 21 19 24 24 C 1.38950 * 120.00030 * 180.27703 * 22 21 19 25 25 N 1.31414 * 119.99926 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99969 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47459 * 59.99812 * 26 24 22 28 28 H 1.48502 * 109.47317 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47211 * 300.00250 * 26 24 22 30 30 C 1.47428 * 125.64866 * 180.02562 * 10 8 6 31 31 H 1.09000 * 109.47016 * 60.00528 * 1 2 3 32 32 H 1.09009 * 109.46856 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47692 * 299.99918 * 1 2 3 34 34 H 1.09004 * 109.47681 * 240.00316 * 2 1 3 35 35 H 1.08993 * 109.47296 * 119.99771 * 2 1 3 36 36 H 1.09006 * 117.50113 * 145.01673 * 5 3 2 37 37 H 1.09002 * 117.49682 * 0.02562 * 5 3 2 38 38 H 1.09001 * 109.88060 * 300.44337 * 11 10 8 39 39 H 1.09000 * 109.88237 * 61.44636 * 11 10 8 40 40 H 1.08996 * 110.70491 * 263.79647 * 12 11 10 41 41 H 1.09000 * 110.75923 * 140.50392 * 12 11 10 42 42 H 1.09004 * 109.47109 * 170.41779 * 15 13 12 43 43 H 1.08996 * 109.47270 * 50.41874 * 15 13 12 44 44 H 1.09004 * 109.46677 * 60.00201 * 16 15 13 45 45 H 1.09004 * 109.46850 * 300.00500 * 16 15 13 46 46 H 1.00900 * 110.99693 * 56.04421 * 17 16 15 47 47 H 1.09003 * 109.46477 * 60.00383 * 18 17 16 48 48 H 1.08993 * 109.47002 * 300.00709 * 18 17 16 49 49 H 0.97001 * 120.00485 * 0.02562 * 21 19 18 50 50 H 0.96999 * 119.99863 * 180.02562 * 25 24 22 51 51 H 1.09000 * 110.36711 * 37.06392 * 30 10 8 52 52 H 1.09007 * 110.45880 * 274.78859 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3882 2.1718 0.4814 5 6 2.8439 1.9077 -1.2158 6 6 3.5500 1.6580 0.1183 7 1 4.1805 0.7723 0.1960 8 6 4.0227 2.8621 0.8915 9 8 3.2155 3.6170 1.3914 10 7 5.3422 3.1003 1.0275 11 6 6.4238 2.2719 0.4751 12 6 7.7597 2.9146 0.9056 13 6 7.3574 3.7507 2.1492 14 1 7.3225 3.1288 3.0436 15 6 8.3069 4.9345 2.3446 16 6 9.6813 4.4199 2.7772 17 7 10.5928 5.5563 2.9654 18 6 11.9251 5.0993 3.3826 19 6 12.8304 6.2901 3.5647 20 8 12.4073 7.4095 3.3669 21 7 14.1100 6.1113 3.9484 22 6 14.9353 7.1943 4.1087 23 1 14.5588 8.1910 3.9318 24 6 16.2561 7.0096 4.4987 25 7 16.7143 5.7968 4.7134 26 14 17.3803 8.4852 4.7177 27 1 16.8210 9.3834 5.7595 28 1 18.7287 8.0228 5.1341 29 1 17.4853 9.2226 3.4329 30 6 5.9400 4.2350 1.7545 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.7211 2.9429 -1.5343 37 1 3.0092 1.1861 -2.0159 38 1 6.3552 1.2593 0.8728 39 1 6.3542 2.2482 -0.6124 40 1 8.1491 3.5587 0.1173 41 1 8.4876 2.1492 1.1746 42 1 7.9085 5.5968 3.1132 43 1 8.4026 5.4821 1.4071 44 1 10.0797 3.7576 2.0085 45 1 9.5855 3.8722 3.7148 46 1 10.2142 6.2177 3.6267 47 1 12.3394 4.4418 2.6182 48 1 11.8445 4.5562 4.3241 49 1 14.4483 5.2161 4.1070 50 1 17.6363 5.6679 4.9860 51 1 5.3558 4.4647 2.6456 52 1 6.0047 5.1102 1.1080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272573697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:25 Heat of formation + Delta-G solvation = -86.916051 kcal Electronic energy + Delta-G solvation = -27763.461325 eV Core-core repulsion = 23761.760244 eV Total energy + Delta-G solvation = -4001.701081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.36332 -40.15528 -39.39176 -37.83449 -36.98554 -35.88388 -34.04401 -33.24413 -32.87634 -30.86033 -29.78171 -27.81053 -26.17607 -25.07828 -24.60401 -23.57658 -22.94703 -21.43095 -21.32006 -20.93799 -19.98330 -19.87399 -18.38955 -17.86222 -17.36336 -16.94960 -16.62961 -16.46661 -16.00513 -15.95363 -15.42974 -15.39127 -15.20989 -15.06960 -14.95156 -14.51480 -14.21933 -14.01884 -13.84040 -13.53412 -13.38763 -13.36435 -13.19477 -13.05999 -13.00365 -12.84568 -12.68683 -12.42980 -12.25645 -12.22064 -12.12293 -11.94436 -11.88679 -11.58600 -11.50116 -11.42053 -11.27579 -11.07301 -10.81780 -10.33984 -10.01056 -9.71506 -9.29012 -8.46178 -5.94997 1.39192 1.40352 1.42400 1.53167 1.88141 2.06206 2.29960 2.81838 2.94395 3.21270 3.32300 3.52049 3.65456 3.66855 3.74671 3.83271 3.93412 4.11548 4.25339 4.27499 4.29555 4.34058 4.36847 4.45582 4.47487 4.51317 4.55089 4.56993 4.63701 4.72278 4.75740 4.81631 4.84584 4.89532 4.91592 4.94582 5.06716 5.14522 5.18260 5.20991 5.25287 5.27905 5.31669 5.41172 5.45814 5.48259 5.91558 6.14163 6.42893 6.45670 6.61044 7.06360 7.13164 7.57012 8.12639 8.70960 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.048787 B = 0.001309 C = 0.001293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.782544 B =21391.837554 C =21644.459259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.125 4.125 4 H 0.090 0.910 5 C -0.135 4.135 6 C -0.189 4.189 7 H 0.148 0.852 8 C 0.546 3.454 9 O -0.594 6.594 10 N -0.616 5.616 11 C 0.098 3.902 12 C -0.124 4.124 13 C -0.086 4.086 14 H 0.091 0.909 15 C -0.099 4.099 16 C 0.064 3.936 17 N -0.688 5.688 18 C 0.066 3.934 19 C 0.435 3.565 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.337 4.337 23 H 0.078 0.922 24 C -0.010 4.010 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.272 1.272 28 H -0.269 1.269 29 H -0.272 1.272 30 C 0.106 3.894 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.133 0.867 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.038 0.962 46 H 0.342 0.658 47 H 0.106 0.894 48 H 0.066 0.934 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.060 0.940 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.422 -18.794 -11.043 33.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 C -0.143 4.143 4 H 0.108 0.892 5 C -0.172 4.172 6 C -0.210 4.210 7 H 0.166 0.834 8 C 0.337 3.663 9 O -0.476 6.476 10 N -0.348 5.348 11 C -0.023 4.023 12 C -0.162 4.162 13 C -0.105 4.105 14 H 0.109 0.891 15 C -0.137 4.137 16 C -0.064 4.064 17 N -0.320 5.320 18 C -0.066 4.066 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.209 5.209 22 C -0.467 4.467 23 H 0.096 0.904 24 C -0.210 4.210 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.198 1.198 30 C -0.017 4.017 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.152 0.848 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.122 0.878 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.057 0.943 46 H 0.160 0.840 47 H 0.124 0.876 48 H 0.084 0.916 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.078 0.922 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.822 -17.725 -11.532 33.376 hybrid contribution 0.705 0.553 1.444 1.699 sum -25.117 -17.172 -10.088 32.055 Atomic orbital electron populations 1.21752 0.95130 1.02262 1.01721 1.21149 0.96314 0.92083 1.03071 1.22493 0.90786 0.99522 1.01544 0.89218 1.23189 1.00432 1.03222 0.90350 1.22314 0.98127 0.97999 1.02520 0.83426 1.20010 0.80564 0.86116 0.79617 1.90678 1.54433 1.51046 1.51394 1.48540 1.05236 1.27614 1.53414 1.22308 0.85345 0.95039 0.99649 1.22793 0.96169 1.00132 0.97096 1.22213 0.91932 0.96917 0.99457 0.89063 1.21376 0.93114 0.96923 1.02333 1.22028 0.91806 0.91985 1.00610 1.60093 1.01733 1.16133 1.54041 1.21525 0.89864 0.93967 1.01269 1.20970 0.83368 0.91367 0.82028 1.90490 1.75977 1.27610 1.57112 1.41923 1.09382 1.09496 1.60146 1.19644 0.92689 0.88913 1.45438 0.90419 1.26008 0.98234 1.00605 0.96173 1.69661 1.17737 1.21950 1.46677 0.85012 0.77115 0.77558 0.78797 1.19746 1.19387 1.19757 1.22277 0.93938 0.89370 0.96112 0.92463 0.91429 0.93560 0.89788 0.91287 0.89678 0.84849 0.89437 0.89741 0.90044 0.87772 0.92128 0.91273 0.89635 0.94338 0.83995 0.87582 0.91624 0.76913 0.91264 0.92191 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.87 71.98 0.71 -0.60 16 2 C -0.09 -0.76 6.22 30.59 0.19 -0.57 16 3 C -0.12 -1.67 5.25 -10.79 -0.06 -1.73 16 4 H 0.09 1.72 7.60 -2.38 -0.02 1.71 16 5 C -0.13 -1.45 9.88 30.59 0.30 -1.15 16 6 C -0.19 -2.52 5.26 -11.54 -0.06 -2.58 16 7 H 0.15 1.17 7.67 -2.39 -0.02 1.15 16 8 C 0.55 11.73 7.63 87.66 0.67 12.40 16 9 O -0.59 -18.31 16.51 -3.06 -0.05 -18.37 16 10 N -0.62 -10.70 3.33 -811.72 -2.70 -13.40 16 11 C 0.10 0.95 6.31 86.74 0.55 1.50 16 12 C -0.12 -1.23 5.75 31.80 0.18 -1.04 16 13 C -0.09 -1.19 3.03 -9.41 -0.03 -1.21 16 14 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 15 C -0.10 -1.75 4.98 30.59 0.15 -1.60 16 16 C 0.06 1.29 5.56 86.30 0.48 1.77 16 17 N -0.69 -20.80 6.13 -517.94 -3.17 -23.97 16 18 C 0.07 2.19 6.17 85.56 0.53 2.72 16 19 C 0.44 20.65 7.82 87.66 0.69 21.33 16 20 O -0.63 -34.88 15.78 -3.07 -0.05 -34.93 16 21 N -0.57 -29.26 5.29 -306.98 -1.62 -30.88 16 22 C -0.34 -19.20 9.68 84.04 0.81 -18.39 16 23 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 25 N -0.92 -49.27 13.05 21.66 0.28 -48.99 16 26 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 28 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 29 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 30 C 0.11 1.95 6.38 86.85 0.55 2.51 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 0.43 7.88 -2.39 -0.02 0.41 16 35 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.08 1.16 8.14 -2.38 -0.02 1.15 16 37 H 0.13 0.68 8.03 -2.39 -0.02 0.66 16 38 H 0.09 0.55 7.98 -2.39 -0.02 0.53 16 39 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 0.88 7.96 -2.39 -0.02 0.86 16 41 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.07 1.36 8.04 -2.39 -0.02 1.34 16 44 H 0.09 1.50 7.63 -2.38 -0.02 1.48 16 45 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.34 11.10 8.43 -89.69 -0.76 10.34 16 47 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 48 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.40 19.13 7.90 -92.71 -0.73 18.39 16 50 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 51 H 0.06 1.31 8.04 -2.39 -0.02 1.29 16 52 H 0.06 1.26 8.03 -2.38 -0.02 1.24 16 Total: -1.00 -75.14 424.60 0.27 -74.87 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.58 Total: 37.58 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 6.14 Total: 13.27 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -7.21 Total: -117.24 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.10 Total: -53.29 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -75.14 0.27 -74.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272573697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.050 kcal (2) G-P(sol) polarization free energy of solvation -75.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds