Wall clock time and date at job start Tue Mar 31 2020 20:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47426 * 2 1 4 4 H 1.09006 * 109.47081 * 305.11360 * 3 2 1 5 5 C 1.50697 * 109.47424 * 185.11332 * 3 2 1 6 6 O 1.21278 * 119.99575 * 256.72053 * 5 3 2 7 7 N 1.34774 * 120.00185 * 76.71195 * 5 3 2 8 8 C 1.46500 * 119.99982 * 355.53129 * 7 5 3 9 9 C 1.46503 * 120.00006 * 175.52000 * 7 5 3 10 10 C 1.53004 * 109.46654 * 90.00623 * 9 7 5 11 11 C 1.53002 * 109.46922 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.46888 * 180.02562 * 11 10 9 13 13 C 1.46495 * 120.00433 * 90.00250 * 12 11 10 14 14 C 1.36946 * 119.99909 * 269.99972 * 12 11 10 15 15 H 1.08001 * 119.99976 * 22.79059 * 14 12 11 16 16 C 1.38812 * 119.99749 * 202.79626 * 14 12 11 17 17 N 1.31619 * 120.00189 * 10.78039 * 16 14 12 18 18 Si 1.86800 * 119.99717 * 190.78471 * 16 14 12 19 19 H 1.48505 * 109.47077 * 89.99771 * 18 16 14 20 20 H 1.48505 * 109.47377 * 209.99689 * 18 16 14 21 21 H 1.48498 * 109.47165 * 329.99682 * 18 16 14 22 22 C 1.50703 * 109.47141 * 65.10700 * 3 2 1 23 23 C 1.41370 * 128.00936 * 242.39886 * 22 3 2 24 24 C 1.50704 * 126.80588 * 359.97438 * 23 22 3 25 25 N 1.30177 * 106.39656 * 179.97438 * 23 22 3 26 26 O 1.20919 * 111.60433 * 359.97438 * 25 23 22 27 27 C 1.34044 * 111.56465 * 359.76465 * 26 25 23 28 28 C 1.50705 * 126.77608 * 180.28756 * 27 26 25 29 29 H 1.08995 * 109.47319 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47231 * 300.00102 * 1 2 3 31 31 H 1.08997 * 109.47314 * 59.99730 * 1 2 3 32 32 H 1.09008 * 109.46684 * 239.99820 * 2 1 3 33 33 H 1.08997 * 109.47314 * 120.00269 * 2 1 3 34 34 H 1.09001 * 109.47485 * 91.00084 * 8 7 5 35 35 H 1.09006 * 109.46884 * 211.00516 * 8 7 5 36 36 H 1.08996 * 109.47055 * 330.99574 * 8 7 5 37 37 H 1.08995 * 109.47188 * 210.00441 * 9 7 5 38 38 H 1.09001 * 109.46955 * 330.00741 * 9 7 5 39 39 H 1.09003 * 109.46897 * 299.99683 * 10 9 7 40 40 H 1.08994 * 109.47349 * 59.99974 * 10 9 7 41 41 H 1.08995 * 109.47023 * 299.99882 * 11 10 9 42 42 H 1.09001 * 109.46852 * 60.00018 * 11 10 9 43 43 H 1.09005 * 109.47261 * 93.56660 * 13 12 11 44 44 H 1.09003 * 109.47477 * 213.57339 * 13 12 11 45 45 H 1.09005 * 109.46643 * 333.57043 * 13 12 11 46 46 H 0.97001 * 119.99711 * 180.02562 * 17 16 14 47 47 H 1.09003 * 109.46547 * 89.99743 * 24 23 22 48 48 H 1.08995 * 109.47272 * 210.00362 * 24 23 22 49 49 H 1.09000 * 109.46951 * 330.00575 * 24 23 22 50 50 H 1.09007 * 109.46686 * 275.51697 * 28 27 26 51 51 H 1.09002 * 109.47079 * 35.51382 * 28 27 26 52 52 H 1.08997 * 109.46801 * 155.52012 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6039 1.9821 -0.8407 5 6 3.5417 1.4443 -0.1266 6 8 4.2321 1.6559 0.8478 7 7 4.1174 1.2108 -1.3226 8 6 3.2887 0.8586 -2.4782 9 6 5.5720 1.3093 -1.4671 10 6 6.2061 -0.0539 -1.1831 11 6 7.7253 0.0491 -1.3333 12 7 8.3324 -1.2562 -1.0620 13 6 8.5350 -2.2112 -2.1543 14 6 8.7105 -1.5838 0.2128 15 1 8.2560 -1.0849 1.0559 16 6 9.6781 -2.5571 0.4212 17 7 10.3822 -3.0129 -0.5930 18 14 9.9807 -3.2199 2.1413 19 1 9.1032 -4.3938 2.3809 20 1 11.4022 -3.6297 2.2709 21 1 9.6773 -2.1631 3.1395 22 6 1.6437 2.1154 1.2888 23 6 0.8010 3.2373 1.4618 24 6 0.1039 4.0185 0.3779 25 7 0.7464 3.4618 2.7429 26 8 1.4120 2.6654 3.3632 27 6 2.0071 1.7814 2.5502 28 6 2.9056 0.6424 2.9586 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.0070 1.7655 -3.0132 35 1 3.8523 0.2044 -3.1436 36 1 2.3904 0.3437 -2.1377 37 1 5.8160 1.6189 -2.4833 38 1 5.9583 2.0440 -0.7607 39 1 5.9621 -0.3635 -0.1668 40 1 5.8198 -0.7886 -1.8894 41 1 7.9697 0.3589 -2.3494 42 1 8.1112 0.7838 -0.6266 43 1 9.5407 -2.0934 -2.5580 44 1 8.4114 -3.2264 -1.7771 45 1 7.8037 -2.0242 -2.9407 46 1 11.0581 -3.6933 -0.4474 47 1 -0.8781 3.5839 0.1911 48 1 -0.0116 5.0552 0.6942 49 1 0.6974 3.9814 -0.5357 50 1 3.9252 1.0089 3.0783 51 1 2.5564 0.2249 3.9030 52 1 2.8850 -0.1301 2.1899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273571949.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:13 Heat of formation + Delta-G solvation = 41.921960 kcal Electronic energy + Delta-G solvation = -30761.534994 eV Core-core repulsion = 26765.420749 eV Total energy + Delta-G solvation = -3996.114245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.98609 -40.26918 -36.73935 -36.00559 -35.36852 -34.23467 -32.80121 -32.15004 -30.26814 -29.03090 -28.71303 -27.30111 -27.02653 -25.86050 -25.08285 -23.09860 -22.40896 -21.29754 -20.36610 -20.17221 -18.93606 -17.74679 -17.49939 -16.79291 -16.60953 -16.05477 -15.42930 -15.25430 -14.78540 -14.40138 -14.14492 -13.95910 -13.86562 -13.62630 -13.33912 -13.21434 -13.14906 -12.95150 -12.87206 -12.79010 -12.70913 -12.56877 -12.55024 -12.22339 -12.02979 -11.71104 -11.62488 -11.25538 -10.97482 -10.91774 -10.87405 -10.79241 -10.68990 -10.39607 -10.13891 -10.05560 -9.83190 -9.71453 -9.62982 -9.11001 -8.66761 -8.44740 -6.67908 -5.67183 -3.13289 1.44375 2.05659 2.60316 2.95055 3.13701 3.41819 3.47959 3.50079 4.00739 4.21855 4.38417 4.45539 4.54927 4.66185 4.83750 4.86159 4.91557 5.07031 5.13622 5.18880 5.19257 5.28623 5.34997 5.38380 5.44829 5.46095 5.48721 5.50593 5.52682 5.57571 5.68822 5.75527 5.78559 5.80245 5.92261 5.96315 6.04592 6.09677 6.16154 6.21787 6.48173 6.63983 6.78050 6.86397 7.06032 7.37310 7.43852 7.76364 7.86983 8.18653 8.21784 8.46223 9.30446 9.93613 10.42162 11.38177 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.002883 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.969335 B = 9708.572573 C =10727.259205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.023 4.023 4 H 0.102 0.898 5 C 0.514 3.486 6 O -0.523 6.523 7 N -0.613 5.613 8 C 0.067 3.933 9 C 0.117 3.883 10 C -0.149 4.149 11 C 0.155 3.845 12 N -0.604 5.604 13 C 0.166 3.834 14 C -0.250 4.250 15 H 0.068 0.932 16 C -0.001 4.001 17 N -0.912 5.912 18 Si 0.904 3.096 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 C -0.196 4.196 23 C 0.026 3.974 24 C -0.075 4.075 25 N -0.373 5.373 26 O 0.090 5.910 27 C 0.016 3.984 28 C -0.072 4.072 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.033 0.967 42 H 0.046 0.954 43 H 0.027 0.973 44 H 0.044 0.956 45 H -0.007 1.007 46 H 0.251 0.749 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.102 0.898 51 H 0.074 0.926 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.898 9.252 -3.838 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.045 4.045 4 H 0.120 0.880 5 C 0.301 3.699 6 O -0.398 6.398 7 N -0.346 5.346 8 C -0.076 4.076 9 C -0.005 4.005 10 C -0.190 4.190 11 C 0.027 3.973 12 N -0.327 5.327 13 C 0.021 3.979 14 C -0.380 4.380 15 H 0.086 0.914 16 C -0.198 4.198 17 N -0.558 5.558 18 Si 0.734 3.266 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.204 1.204 22 C -0.200 4.200 23 C -0.133 4.133 24 C -0.132 4.132 25 N -0.080 5.080 26 O 0.028 5.972 27 C -0.048 4.048 28 C -0.129 4.129 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.063 0.937 45 H 0.012 0.988 46 H 0.061 0.939 47 H 0.098 0.902 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.120 0.880 51 H 0.093 0.907 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.971 10.140 -2.556 25.239 hybrid contribution 0.505 -0.875 0.101 1.016 sum -22.466 9.265 -2.454 24.425 Atomic orbital electron populations 1.21739 0.94591 1.02022 1.02093 1.21751 0.96971 0.93524 1.03786 1.19565 0.92858 0.97495 0.94616 0.88026 1.20412 0.89752 0.76802 0.82921 1.90712 1.64589 1.48065 1.36447 1.47893 1.08019 1.69377 1.09302 1.22011 0.96027 1.00654 0.88913 1.21597 0.77703 0.99569 1.01629 1.22587 0.99418 0.94846 1.02190 1.20620 0.89942 0.88810 0.97898 1.43888 1.70896 1.11849 1.06039 1.20765 0.96118 0.93328 0.87701 1.19234 1.15656 1.19282 0.83786 0.91403 1.25026 0.96551 1.01044 0.97222 1.70070 1.24445 1.32040 1.29210 0.86252 0.77040 0.79039 0.84247 1.21566 1.21772 1.20415 1.20134 1.05027 1.00012 0.94844 1.23320 1.00116 0.96992 0.92893 1.20145 0.99633 0.99127 0.94294 1.73823 1.14358 1.12870 1.06978 1.84783 1.46671 1.31355 1.34420 1.24264 0.96621 0.94676 0.89195 1.20502 0.98016 0.92038 1.02322 0.92149 0.92619 0.92477 0.90113 0.90525 0.92738 0.90571 0.90529 0.91025 0.90170 0.91702 0.92996 0.94848 0.93512 0.95518 0.93748 0.98815 0.93858 0.90214 0.90560 0.90339 0.87975 0.90677 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.73 37.16 0.36 -0.64 16 2 C -0.12 -1.01 4.96 -26.73 -0.13 -1.15 16 3 C -0.02 -0.23 1.60 -92.93 -0.15 -0.38 16 4 H 0.10 0.77 6.75 -51.93 -0.35 0.42 16 5 C 0.51 6.65 6.70 -10.99 -0.07 6.58 16 6 O -0.52 -8.68 12.74 5.56 0.07 -8.61 16 7 N -0.61 -7.17 2.87 -181.57 -0.52 -7.69 16 8 C 0.07 0.52 9.86 59.85 0.59 1.11 16 9 C 0.12 1.61 5.38 -4.04 -0.02 1.58 16 10 C -0.15 -2.57 5.86 -26.73 -0.16 -2.73 16 11 C 0.16 3.19 5.65 -4.04 -0.02 3.17 16 12 N -0.60 -15.46 2.92 -181.12 -0.53 -15.99 16 13 C 0.17 4.13 8.96 59.84 0.54 4.66 16 14 C -0.25 -7.04 9.67 -15.06 -0.15 -7.18 16 15 H 0.07 1.90 7.85 -52.49 -0.41 1.49 16 16 C 0.00 -0.02 5.13 -17.43 -0.09 -0.11 16 17 N -0.91 -27.05 10.59 55.49 0.59 -26.46 16 18 Si 0.90 22.34 29.57 -169.99 -5.03 17.31 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 C -0.20 -2.28 3.74 -104.43 -0.39 -2.67 16 23 C 0.03 0.30 7.33 -82.10 -0.60 -0.30 16 24 C -0.07 -0.58 10.27 36.01 0.37 -0.21 16 25 N -0.37 -5.13 12.07 33.42 0.40 -4.72 16 26 O 0.09 1.24 11.20 17.17 0.19 1.43 16 27 C 0.02 0.20 6.86 -35.30 -0.24 -0.04 16 28 C -0.07 -0.82 8.62 36.01 0.31 -0.51 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.45 7.38 -51.93 -0.38 0.06 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.60 5.73 -51.92 -0.30 0.30 16 33 H 0.08 0.72 5.42 -51.93 -0.28 0.43 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 36 H 0.08 0.47 4.39 -51.93 -0.23 0.24 16 37 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 38 H 0.08 1.23 7.49 -51.93 -0.39 0.84 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 42 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 43 H 0.03 0.71 7.45 -51.93 -0.39 0.33 16 44 H 0.04 1.19 7.16 -51.93 -0.37 0.82 16 45 H -0.01 -0.14 8.05 -51.93 -0.42 -0.56 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.08 0.50 7.52 -51.93 -0.39 0.11 16 50 H 0.10 1.35 7.33 -51.93 -0.38 0.97 16 51 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.09 0.99 5.27 -51.93 -0.27 0.72 16 LS Contribution 407.07 15.07 6.13 6.13 Total: -1.00 -34.03 407.07 -7.30 -41.33 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -8.75 Total: -3.91 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 0.14 Total: 1.18 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.06 Total: -54.86 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.26 Total: -7.18 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.03 -7.30 -41.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273571949.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.255 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds