Wall clock time and date at job start Tue Mar 31 2020 20:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47426 * 2 1 4 4 H 1.09006 * 109.47081 * 305.11360 * 3 2 1 5 5 C 1.50697 * 109.47424 * 185.11332 * 3 2 1 6 6 O 1.21278 * 119.99575 * 256.72053 * 5 3 2 7 7 N 1.34774 * 120.00185 * 76.71195 * 5 3 2 8 8 C 1.46500 * 119.99982 * 355.53129 * 7 5 3 9 9 C 1.46503 * 120.00006 * 175.52000 * 7 5 3 10 10 C 1.53004 * 109.46654 * 90.00623 * 9 7 5 11 11 C 1.53002 * 109.46922 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.46888 * 180.02562 * 11 10 9 13 13 C 1.46495 * 120.00433 * 90.00250 * 12 11 10 14 14 C 1.36946 * 119.99909 * 269.99972 * 12 11 10 15 15 H 1.08001 * 119.99976 * 22.79059 * 14 12 11 16 16 C 1.38812 * 119.99749 * 202.79626 * 14 12 11 17 17 N 1.31619 * 120.00189 * 10.78039 * 16 14 12 18 18 Si 1.86800 * 119.99717 * 190.78471 * 16 14 12 19 19 H 1.48505 * 109.47077 * 89.99771 * 18 16 14 20 20 H 1.48505 * 109.47377 * 209.99689 * 18 16 14 21 21 H 1.48498 * 109.47165 * 329.99682 * 18 16 14 22 22 C 1.50703 * 109.47141 * 65.10700 * 3 2 1 23 23 C 1.41370 * 128.00936 * 242.39886 * 22 3 2 24 24 C 1.50704 * 126.80588 * 359.97438 * 23 22 3 25 25 N 1.30177 * 106.39656 * 179.97438 * 23 22 3 26 26 O 1.20919 * 111.60433 * 359.97438 * 25 23 22 27 27 C 1.34044 * 111.56465 * 359.76465 * 26 25 23 28 28 C 1.50705 * 126.77608 * 180.28756 * 27 26 25 29 29 H 1.08995 * 109.47319 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47231 * 300.00102 * 1 2 3 31 31 H 1.08997 * 109.47314 * 59.99730 * 1 2 3 32 32 H 1.09008 * 109.46684 * 239.99820 * 2 1 3 33 33 H 1.08997 * 109.47314 * 120.00269 * 2 1 3 34 34 H 1.09001 * 109.47485 * 91.00084 * 8 7 5 35 35 H 1.09006 * 109.46884 * 211.00516 * 8 7 5 36 36 H 1.08996 * 109.47055 * 330.99574 * 8 7 5 37 37 H 1.08995 * 109.47188 * 210.00441 * 9 7 5 38 38 H 1.09001 * 109.46955 * 330.00741 * 9 7 5 39 39 H 1.09003 * 109.46897 * 299.99683 * 10 9 7 40 40 H 1.08994 * 109.47349 * 59.99974 * 10 9 7 41 41 H 1.08995 * 109.47023 * 299.99882 * 11 10 9 42 42 H 1.09001 * 109.46852 * 60.00018 * 11 10 9 43 43 H 1.09005 * 109.47261 * 93.56660 * 13 12 11 44 44 H 1.09003 * 109.47477 * 213.57339 * 13 12 11 45 45 H 1.09005 * 109.46643 * 333.57043 * 13 12 11 46 46 H 0.97001 * 119.99711 * 180.02562 * 17 16 14 47 47 H 1.09003 * 109.46547 * 89.99743 * 24 23 22 48 48 H 1.08995 * 109.47272 * 210.00362 * 24 23 22 49 49 H 1.09000 * 109.46951 * 330.00575 * 24 23 22 50 50 H 1.09007 * 109.46686 * 275.51697 * 28 27 26 51 51 H 1.09002 * 109.47079 * 35.51382 * 28 27 26 52 52 H 1.08997 * 109.46801 * 155.52012 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6039 1.9821 -0.8407 5 6 3.5417 1.4443 -0.1266 6 8 4.2321 1.6559 0.8478 7 7 4.1174 1.2108 -1.3226 8 6 3.2887 0.8586 -2.4782 9 6 5.5720 1.3093 -1.4671 10 6 6.2061 -0.0539 -1.1831 11 6 7.7253 0.0491 -1.3333 12 7 8.3324 -1.2562 -1.0620 13 6 8.5350 -2.2112 -2.1543 14 6 8.7105 -1.5838 0.2128 15 1 8.2560 -1.0849 1.0559 16 6 9.6781 -2.5571 0.4212 17 7 10.3822 -3.0129 -0.5930 18 14 9.9807 -3.2199 2.1413 19 1 9.1032 -4.3938 2.3809 20 1 11.4022 -3.6297 2.2709 21 1 9.6773 -2.1631 3.1395 22 6 1.6437 2.1154 1.2888 23 6 0.8010 3.2373 1.4618 24 6 0.1039 4.0185 0.3779 25 7 0.7464 3.4618 2.7429 26 8 1.4120 2.6654 3.3632 27 6 2.0071 1.7814 2.5502 28 6 2.9056 0.6424 2.9586 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.0070 1.7655 -3.0132 35 1 3.8523 0.2044 -3.1436 36 1 2.3904 0.3437 -2.1377 37 1 5.8160 1.6189 -2.4833 38 1 5.9583 2.0440 -0.7607 39 1 5.9621 -0.3635 -0.1668 40 1 5.8198 -0.7886 -1.8894 41 1 7.9697 0.3589 -2.3494 42 1 8.1112 0.7838 -0.6266 43 1 9.5407 -2.0934 -2.5580 44 1 8.4114 -3.2264 -1.7771 45 1 7.8037 -2.0242 -2.9407 46 1 11.0581 -3.6933 -0.4474 47 1 -0.8781 3.5839 0.1911 48 1 -0.0116 5.0552 0.6942 49 1 0.6974 3.9814 -0.5357 50 1 3.9252 1.0089 3.0783 51 1 2.5564 0.2249 3.9030 52 1 2.8850 -0.1301 2.1899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273571949.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:12 Heat of formation + Delta-G solvation = 22.189488 kcal Electronic energy + Delta-G solvation = -30762.390659 eV Core-core repulsion = 26765.420749 eV Total energy + Delta-G solvation = -3996.969910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.90775 -41.22541 -38.05530 -37.17909 -36.66779 -35.07995 -34.13919 -33.40489 -31.92811 -29.79470 -29.53778 -28.31460 -27.95077 -27.81326 -26.43445 -24.14052 -23.64415 -22.25214 -21.91338 -21.23256 -19.85900 -18.75843 -18.68321 -18.34282 -17.68889 -17.18857 -16.73656 -16.32674 -16.04502 -15.78045 -15.43612 -15.05316 -14.79172 -14.62092 -14.53055 -14.38221 -14.29070 -13.99273 -13.92455 -13.68642 -13.63129 -13.37157 -13.28937 -13.21440 -13.00962 -12.95661 -12.81404 -12.66380 -12.53131 -12.46173 -12.34568 -12.21192 -12.07893 -11.87867 -11.75045 -11.53151 -11.38487 -10.94509 -10.67438 -10.59526 -10.05025 -9.60159 -8.74234 -7.83565 -5.31933 0.48834 1.18853 1.44284 1.44442 1.54169 1.64507 2.04493 2.22018 2.50107 3.20546 3.29455 3.43017 3.62553 3.63820 3.72988 3.96467 4.04841 4.14438 4.17207 4.26417 4.40538 4.42150 4.47152 4.56963 4.58144 4.59244 4.64182 4.69127 4.74243 4.77304 4.78105 4.80926 4.85562 4.89301 4.92812 4.96484 4.99202 5.08246 5.17426 5.24792 5.28399 5.29741 5.32493 5.44908 5.54255 5.61679 5.66039 5.72914 6.33597 6.46541 7.16395 7.23469 7.27886 7.89497 8.30801 9.19399 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.002883 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.969335 B = 9708.572573 C =10727.259205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C -0.013 4.013 4 H 0.134 0.866 5 C 0.506 3.494 6 O -0.570 6.570 7 N -0.611 5.611 8 C 0.058 3.942 9 C 0.127 3.873 10 C -0.127 4.127 11 C 0.152 3.848 12 N -0.623 5.623 13 C 0.179 3.821 14 C -0.260 4.260 15 H 0.061 0.939 16 C -0.053 4.053 17 N -0.939 5.939 18 Si 0.965 3.035 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.273 1.273 22 C -0.197 4.197 23 C 0.030 3.970 24 C -0.076 4.076 25 N -0.401 5.401 26 O 0.067 5.933 27 C -0.001 4.001 28 C -0.066 4.066 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.058 0.942 39 H 0.027 0.973 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.032 0.968 43 H 0.002 0.998 44 H 0.016 0.984 45 H 0.033 0.967 46 H 0.248 0.752 47 H 0.102 0.898 48 H 0.076 0.924 49 H 0.098 0.902 50 H 0.078 0.922 51 H 0.092 0.908 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.268 9.716 -6.020 27.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C -0.035 4.035 4 H 0.152 0.848 5 C 0.294 3.706 6 O -0.448 6.448 7 N -0.343 5.343 8 C -0.083 4.083 9 C 0.003 3.997 10 C -0.168 4.168 11 C 0.026 3.974 12 N -0.347 5.347 13 C 0.035 3.965 14 C -0.390 4.390 15 H 0.078 0.922 16 C -0.248 4.248 17 N -0.586 5.586 18 Si 0.794 3.206 19 H -0.210 1.210 20 H -0.218 1.218 21 H -0.198 1.198 22 C -0.202 4.202 23 C -0.130 4.130 24 C -0.133 4.133 25 N -0.113 5.113 26 O 0.009 5.991 27 C -0.064 4.064 28 C -0.123 4.123 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.020 0.980 44 H 0.035 0.965 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.120 0.880 48 H 0.095 0.905 49 H 0.117 0.883 50 H 0.097 0.903 51 H 0.111 0.889 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.376 10.610 -4.758 27.913 hybrid contribution 1.219 -0.968 0.716 1.714 sum -24.156 9.641 -4.042 26.322 Atomic orbital electron populations 1.21701 0.93103 1.02648 1.02403 1.21769 0.98131 0.92294 1.03659 1.19627 0.90503 0.98720 0.94647 0.84840 1.21035 0.91012 0.75925 0.82584 1.90709 1.65854 1.50156 1.38123 1.47956 1.07398 1.68699 1.10279 1.22337 0.96051 1.02329 0.87579 1.21353 0.79097 0.96478 1.02738 1.22245 0.97112 0.97298 1.00144 1.20802 0.91556 0.86306 0.98769 1.44160 1.71376 1.13771 1.05356 1.20523 0.95904 0.91891 0.88223 1.19445 1.15369 1.19200 0.85002 0.92165 1.25749 0.96681 1.01601 1.00746 1.70221 1.24993 1.32533 1.30889 0.85292 0.76675 0.78430 0.80245 1.21034 1.21765 1.19834 1.20449 1.04571 0.99942 0.95190 1.23989 0.99290 0.96673 0.93004 1.20366 1.00688 0.98694 0.93571 1.73809 1.15569 1.13696 1.08239 1.84742 1.47383 1.31908 1.35066 1.24537 0.96967 0.94927 0.89959 1.20430 0.96612 0.91897 1.03372 0.91449 0.94171 0.90218 0.88698 0.92279 0.90075 0.90026 0.88757 0.87800 0.92300 0.95371 0.92215 0.92368 0.94972 0.98011 0.96528 0.94823 0.94231 0.87973 0.90488 0.88297 0.90348 0.88909 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.73 71.98 0.70 -0.78 16 2 C -0.12 -1.70 4.96 30.59 0.15 -1.55 16 3 C -0.01 -0.23 1.60 -12.29 -0.02 -0.25 16 4 H 0.13 1.42 6.75 -2.38 -0.02 1.40 16 5 C 0.51 12.44 6.70 87.66 0.59 13.03 16 6 O -0.57 -19.36 12.74 -3.02 -0.04 -19.39 16 7 N -0.61 -12.75 2.87 -846.75 -2.43 -15.18 16 8 C 0.06 0.63 9.86 127.77 1.26 1.89 16 9 C 0.13 3.23 5.38 86.38 0.46 3.70 16 10 C -0.13 -4.26 5.86 30.60 0.18 -4.09 16 11 C 0.15 6.15 5.65 86.38 0.49 6.64 16 12 N -0.62 -32.04 2.92 -726.93 -2.13 -34.17 16 13 C 0.18 8.92 8.96 127.77 1.15 10.06 16 14 C -0.26 -14.90 9.67 84.03 0.81 -14.08 16 15 H 0.06 3.47 7.85 -2.91 -0.02 3.45 16 16 C -0.05 -3.07 5.13 84.86 0.44 -2.63 16 17 N -0.94 -56.69 10.59 21.65 0.23 -56.46 16 18 Si 0.97 46.65 29.57 68.60 2.03 48.68 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 21 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 22 C -0.20 -4.41 3.74 -19.74 -0.07 -4.48 16 23 C 0.03 0.66 7.33 43.58 0.32 0.98 16 24 C -0.08 -0.95 10.27 71.24 0.73 -0.22 16 25 N -0.40 -11.10 12.07 -49.56 -0.60 -11.70 16 26 O 0.07 1.93 11.20 71.60 0.80 2.73 16 27 C 0.00 -0.02 6.86 25.04 0.17 0.15 16 28 C -0.07 -1.60 8.62 71.24 0.61 -0.99 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.04 0.56 7.38 -2.39 -0.02 0.54 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 1.07 5.73 -2.38 -0.01 1.06 16 33 H 0.06 1.05 5.42 -2.39 -0.01 1.04 16 34 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.08 0.86 8.08 -2.38 -0.02 0.84 16 36 H 0.09 0.70 4.39 -2.39 -0.01 0.69 16 37 H 0.10 2.02 8.07 -2.39 -0.02 2.00 16 38 H 0.06 1.78 7.49 -2.39 -0.02 1.76 16 39 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 42 H 0.03 1.37 8.04 -2.39 -0.02 1.36 16 43 H 0.00 0.09 7.45 -2.38 -0.02 0.07 16 44 H 0.02 0.88 7.16 -2.39 -0.02 0.86 16 45 H 0.03 1.37 8.05 -2.38 -0.02 1.35 16 46 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 47 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.10 0.83 7.52 -2.39 -0.02 0.81 16 50 H 0.08 2.28 7.33 -2.38 -0.02 2.26 16 51 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.09 2.13 5.27 -2.39 -0.01 2.11 16 Total: -1.00 -77.38 407.07 6.74 -70.64 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.90 Total: 7.47 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 7.97 Total: 7.38 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -4.93 Total: -117.51 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.76 Total: -16.67 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -77.38 6.74 -70.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273571949.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.830 kcal (2) G-P(sol) polarization free energy of solvation -77.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds