Wall clock time and date at job start Tue Mar 31 2020 20:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47112 * 2 1 4 4 H 1.09006 * 109.47193 * 305.35685 * 3 2 1 5 5 C 1.50702 * 109.47169 * 65.35958 * 3 2 1 6 6 O 1.21277 * 119.99606 * 25.42913 * 5 3 2 7 7 N 1.34773 * 119.99875 * 205.43603 * 5 3 2 8 8 C 1.46499 * 120.00236 * 355.93334 * 7 5 3 9 9 C 1.46501 * 119.99862 * 175.92713 * 7 5 3 10 10 C 1.53005 * 109.46591 * 89.99935 * 9 7 5 11 11 C 1.53002 * 109.46733 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46930 * 180.02562 * 11 10 9 13 13 C 1.46488 * 120.00186 * 90.00342 * 12 11 10 14 14 C 1.36939 * 119.99897 * 270.00005 * 12 11 10 15 15 H 1.07998 * 120.00203 * 141.33615 * 14 12 11 16 16 C 1.38816 * 120.00076 * 321.33670 * 14 12 11 17 17 N 1.31622 * 119.99784 * 159.39546 * 16 14 12 18 18 Si 1.86797 * 120.00229 * 339.39964 * 16 14 12 19 19 H 1.48496 * 109.47258 * 95.48404 * 18 16 14 20 20 H 1.48494 * 109.47508 * 215.48861 * 18 16 14 21 21 H 1.48510 * 109.46796 * 335.48601 * 18 16 14 22 22 C 1.50696 * 109.47229 * 185.35937 * 3 2 1 23 23 C 1.41379 * 128.00519 * 300.00193 * 22 3 2 24 24 C 1.50701 * 126.80478 * 0.03206 * 23 22 3 25 25 N 1.30183 * 106.39549 * 179.97438 * 23 22 3 26 26 O 1.20917 * 111.60311 * 359.72213 * 25 23 22 27 27 C 1.34041 * 111.56838 * 0.45005 * 26 25 23 28 28 C 1.50697 * 126.77743 * 179.82551 * 27 26 25 29 29 H 1.08997 * 109.47066 * 63.77914 * 1 2 3 30 30 H 1.09003 * 109.47196 * 183.77387 * 1 2 3 31 31 H 1.08999 * 109.46959 * 303.77743 * 1 2 3 32 32 H 1.09004 * 109.46880 * 240.00486 * 2 1 3 33 33 H 1.08993 * 109.47413 * 120.00249 * 2 1 3 34 34 H 1.08996 * 109.47285 * 88.82646 * 8 7 5 35 35 H 1.09004 * 109.47016 * 208.82920 * 8 7 5 36 36 H 1.09002 * 109.46830 * 328.82687 * 8 7 5 37 37 H 1.08996 * 109.47187 * 210.00049 * 9 7 5 38 38 H 1.08999 * 109.47096 * 330.00714 * 9 7 5 39 39 H 1.08996 * 109.47448 * 299.99954 * 10 9 7 40 40 H 1.08999 * 109.46764 * 60.00576 * 10 9 7 41 41 H 1.08996 * 109.47216 * 300.00218 * 11 10 9 42 42 H 1.09007 * 109.46955 * 60.00425 * 11 10 9 43 43 H 1.09002 * 109.47618 * 95.02808 * 13 12 11 44 44 H 1.09000 * 109.47535 * 215.02898 * 13 12 11 45 45 H 1.09007 * 109.46948 * 335.02630 * 13 12 11 46 46 H 0.97001 * 119.99673 * 180.02562 * 17 16 14 47 47 H 1.09005 * 109.47088 * 89.99989 * 24 23 22 48 48 H 1.08997 * 109.47264 * 209.99776 * 24 23 22 49 49 H 1.09000 * 109.46894 * 330.00768 * 24 23 22 50 50 H 1.09002 * 109.47032 * 269.69006 * 28 27 26 51 51 H 1.08999 * 109.47414 * 29.68530 * 28 27 26 52 52 H 1.08997 * 109.47086 * 149.68797 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6005 1.9833 -0.8382 5 6 1.6490 2.1136 1.2915 6 8 1.4558 1.4477 2.2865 7 7 1.5139 3.4536 1.3405 8 6 1.8332 4.2657 0.1638 9 6 1.0476 4.0982 2.5707 10 6 2.2493 4.4434 3.4526 11 6 1.7623 5.1172 4.7370 12 7 2.9130 5.4484 5.5812 13 6 3.5744 6.7479 5.4412 14 6 3.3702 4.5430 6.5013 15 1 4.4316 4.4291 6.6655 16 6 2.4695 3.7717 7.2230 17 7 2.8674 2.6515 7.7880 18 14 0.6930 4.3234 7.3921 19 1 -0.1327 3.6599 6.3514 20 1 0.1854 3.9527 8.7375 21 1 0.6139 5.7966 7.2219 22 6 3.5411 1.4446 -0.1327 23 6 4.4925 0.8590 0.7338 24 6 4.2090 0.0918 1.9996 25 7 5.6618 1.1128 0.2210 26 8 5.5700 1.7448 -0.8057 27 6 4.2913 2.0073 -1.1101 28 6 3.7874 2.7721 -2.3068 29 1 -0.3633 0.4540 -0.9219 30 1 -0.3634 -1.0255 0.0676 31 1 -0.3633 0.5713 0.8542 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 0.9461 4.3635 -0.4618 35 1 2.1635 5.2541 0.4832 36 1 2.6279 3.7835 -0.4056 37 1 0.5066 5.0107 2.3202 38 1 0.3856 3.4193 3.1082 39 1 2.7902 3.5310 3.7031 40 1 2.9112 5.1224 2.9151 41 1 1.2216 6.0298 4.4862 42 1 1.1001 4.4386 5.2747 43 1 3.1669 7.4440 6.1743 44 1 4.6452 6.6305 5.6077 45 1 3.4033 7.1363 4.4371 46 1 2.2379 2.1123 8.2920 47 1 4.0947 -0.9666 1.7651 48 1 5.0369 0.2221 2.6965 49 1 3.2905 0.4648 2.4525 50 1 3.7125 3.8303 -2.0565 51 1 4.4805 2.6438 -3.1383 52 1 2.8050 2.3955 -2.5913 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273571957.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:16 Heat of formation + Delta-G solvation = 40.207085 kcal Electronic energy + Delta-G solvation = -31587.819801 eV Core-core repulsion = 27591.631193 eV Total energy + Delta-G solvation = -3996.188608 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.02989 -40.22865 -36.75401 -35.90339 -35.44704 -33.99216 -33.15316 -31.96609 -31.07032 -29.03769 -28.53367 -27.39301 -26.90976 -26.19186 -25.18578 -22.69619 -22.43128 -21.21989 -20.58703 -20.25734 -18.95138 -17.74282 -17.53107 -16.85120 -16.61542 -15.83128 -15.70690 -15.31206 -14.67794 -14.41314 -14.28014 -14.01862 -13.73098 -13.62190 -13.40395 -13.32556 -13.18068 -13.04854 -12.99851 -12.64456 -12.61039 -12.50632 -12.29261 -12.19006 -12.00194 -11.82942 -11.64668 -11.47909 -11.29736 -11.08525 -11.05569 -10.84496 -10.76865 -10.41811 -10.36226 -10.07110 -9.69428 -9.58771 -9.45932 -9.14813 -8.56799 -8.44323 -6.73005 -5.91784 -3.35550 1.29973 2.11967 2.64393 3.01244 3.04593 3.36175 3.49803 3.55329 4.11387 4.30494 4.37738 4.55181 4.58564 4.70349 4.85370 4.91121 5.01224 5.02280 5.05145 5.13854 5.17127 5.22477 5.34120 5.43116 5.44163 5.45115 5.49213 5.57488 5.59026 5.68970 5.77276 5.79443 5.86309 5.92918 5.95845 6.03939 6.10085 6.12268 6.18304 6.27409 6.36324 6.40782 6.57746 6.71280 6.73676 6.84089 7.11115 7.43212 8.13565 8.24695 8.26955 8.45081 9.05343 9.77967 10.18640 11.23922 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012303 B = 0.003728 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.286558 B = 7509.572862 C = 7726.031354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C -0.025 4.025 4 H 0.099 0.901 5 C 0.520 3.480 6 O -0.516 6.516 7 N -0.612 5.612 8 C 0.072 3.928 9 C 0.114 3.886 10 C -0.145 4.145 11 C 0.143 3.857 12 N -0.613 5.613 13 C 0.127 3.873 14 C -0.271 4.271 15 H 0.076 0.924 16 C 0.038 3.962 17 N -0.899 5.899 18 Si 0.881 3.119 19 H -0.284 1.284 20 H -0.302 1.302 21 H -0.271 1.271 22 C -0.193 4.193 23 C 0.046 3.954 24 C -0.096 4.096 25 N -0.365 5.365 26 O 0.099 5.901 27 C -0.032 4.032 28 C -0.078 4.078 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.036 0.964 42 H 0.053 0.947 43 H 0.008 0.992 44 H 0.037 0.963 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.107 0.893 50 H 0.090 0.910 51 H 0.086 0.914 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 0.019 -25.174 25.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.047 4.047 4 H 0.117 0.883 5 C 0.306 3.694 6 O -0.391 6.391 7 N -0.345 5.345 8 C -0.072 4.072 9 C -0.008 4.008 10 C -0.186 4.186 11 C 0.016 3.984 12 N -0.337 5.337 13 C -0.018 4.018 14 C -0.400 4.400 15 H 0.093 0.907 16 C -0.163 4.163 17 N -0.540 5.540 18 Si 0.711 3.289 19 H -0.212 1.212 20 H -0.230 1.230 21 H -0.196 1.196 22 C -0.197 4.197 23 C -0.113 4.113 24 C -0.153 4.153 25 N -0.071 5.071 26 O 0.035 5.965 27 C -0.096 4.096 28 C -0.135 4.135 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.026 0.974 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.073 0.927 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.125 0.875 50 H 0.108 0.892 51 H 0.105 0.895 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.962 -0.729 -24.142 24.334 hybrid contribution -1.618 0.416 0.065 1.671 sum -4.580 -0.314 -24.077 24.510 Atomic orbital electron populations 1.21794 0.95070 1.02344 1.01810 1.21448 0.96302 0.93310 1.03406 1.19678 0.89135 0.98788 0.97054 0.88319 1.20318 0.77135 0.82006 0.89894 1.90714 1.49006 1.63327 1.36042 1.47889 1.66714 1.06041 1.13890 1.21922 1.00463 0.96622 0.88145 1.21625 0.97656 0.97178 0.84354 1.22470 0.97154 1.02171 0.96814 1.21074 0.90437 0.96606 0.90258 1.44013 1.35452 1.13737 1.40490 1.21041 0.96705 0.87165 0.96911 1.18749 0.93013 1.14182 1.14037 0.90655 1.25466 0.97970 0.96304 0.96522 1.69857 1.35577 1.11966 1.36646 0.86856 0.86497 0.79540 0.75976 1.21180 1.22970 1.19586 1.20426 0.96085 1.05857 0.97321 1.23519 0.87715 1.00483 0.99608 1.20537 1.05289 0.98506 0.90985 1.73881 1.23080 1.12325 0.97854 1.84821 1.26530 1.53606 1.31564 1.24165 0.84162 1.01701 0.99601 1.20424 1.01844 0.99121 0.92116 0.93072 0.92205 0.91972 0.91289 0.89928 0.92609 0.90697 0.91280 0.91073 0.89968 0.90800 0.93147 0.94549 0.92911 0.97405 0.94444 0.95286 0.92737 0.90392 0.90418 0.87505 0.89187 0.89499 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.76 37.16 0.36 -1.13 16 2 C -0.11 -1.13 4.95 -26.73 -0.13 -1.26 16 3 C -0.02 -0.27 1.67 -92.93 -0.15 -0.42 16 4 H 0.10 0.78 6.09 -51.93 -0.32 0.47 16 5 C 0.52 7.65 5.49 -10.99 -0.06 7.59 16 6 O -0.52 -9.68 12.65 5.56 0.07 -9.61 16 7 N -0.61 -8.29 2.87 -181.57 -0.52 -8.81 16 8 C 0.07 0.64 9.77 59.85 0.58 1.23 16 9 C 0.11 1.80 5.37 -4.04 -0.02 1.78 16 10 C -0.15 -2.83 5.86 -26.73 -0.16 -2.99 16 11 C 0.14 3.15 4.46 -4.04 -0.02 3.13 16 12 N -0.61 -15.30 2.47 -181.12 -0.45 -15.74 16 13 C 0.13 2.65 10.69 59.84 0.64 3.29 16 14 C -0.27 -7.97 9.95 -15.06 -0.15 -8.12 16 15 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 16 C 0.04 1.14 5.33 -17.43 -0.09 1.05 16 17 N -0.90 -28.55 13.97 55.49 0.78 -27.78 16 18 Si 0.88 23.11 24.97 -169.99 -4.24 18.87 16 19 H -0.28 -7.23 6.70 56.52 0.38 -6.85 16 20 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 21 H -0.27 -6.93 7.11 56.52 0.40 -6.52 16 22 C -0.19 -2.34 4.28 -104.42 -0.45 -2.79 16 23 C 0.05 0.69 7.20 -82.10 -0.59 0.10 16 24 C -0.10 -1.48 9.23 36.01 0.33 -1.15 16 25 N -0.37 -5.72 12.07 33.42 0.40 -5.31 16 26 O 0.10 1.30 11.20 17.17 0.19 1.49 16 27 C -0.03 -0.33 6.90 -35.30 -0.24 -0.57 16 28 C -0.08 -0.39 9.19 36.00 0.33 -0.06 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.75 6.84 -51.93 -0.36 0.39 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.04 6.41 -51.93 -0.33 0.71 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 36 H 0.07 0.56 3.33 -51.93 -0.17 0.38 16 37 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 38 H 0.08 1.47 7.48 -51.93 -0.39 1.08 16 39 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 42 H 0.05 1.30 3.28 -51.93 -0.17 1.13 16 43 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 45 H 0.03 0.51 8.03 -51.93 -0.42 0.09 16 46 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 47 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 49 H 0.11 1.88 5.00 -51.93 -0.26 1.62 16 50 H 0.09 0.35 7.18 -51.93 -0.37 -0.03 16 51 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 52 H 0.09 0.30 7.39 -51.93 -0.38 -0.08 16 LS Contribution 402.32 15.07 6.06 6.06 Total: -1.00 -36.16 402.32 -6.18 -42.34 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -8.65 Total: -1.18 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 0.18 Total: -0.33 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.21 Total: -57.65 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.26 Total: -8.12 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.24 Total: 18.87 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.16 -6.18 -42.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273571957.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.551 kcal (2) G-P(sol) polarization free energy of solvation -36.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds