Wall clock time and date at job start Tue Mar 31 2020 20:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47112 * 2 1 4 4 H 1.09006 * 109.47193 * 305.35685 * 3 2 1 5 5 C 1.50702 * 109.47169 * 65.35958 * 3 2 1 6 6 O 1.21277 * 119.99606 * 25.42913 * 5 3 2 7 7 N 1.34773 * 119.99875 * 205.43603 * 5 3 2 8 8 C 1.46499 * 120.00236 * 355.93334 * 7 5 3 9 9 C 1.46501 * 119.99862 * 175.92713 * 7 5 3 10 10 C 1.53005 * 109.46591 * 89.99935 * 9 7 5 11 11 C 1.53002 * 109.46733 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46930 * 180.02562 * 11 10 9 13 13 C 1.46488 * 120.00186 * 90.00342 * 12 11 10 14 14 C 1.36939 * 119.99897 * 270.00005 * 12 11 10 15 15 H 1.07998 * 120.00203 * 141.33615 * 14 12 11 16 16 C 1.38816 * 120.00076 * 321.33670 * 14 12 11 17 17 N 1.31622 * 119.99784 * 159.39546 * 16 14 12 18 18 Si 1.86797 * 120.00229 * 339.39964 * 16 14 12 19 19 H 1.48496 * 109.47258 * 95.48404 * 18 16 14 20 20 H 1.48494 * 109.47508 * 215.48861 * 18 16 14 21 21 H 1.48510 * 109.46796 * 335.48601 * 18 16 14 22 22 C 1.50696 * 109.47229 * 185.35937 * 3 2 1 23 23 C 1.41379 * 128.00519 * 300.00193 * 22 3 2 24 24 C 1.50701 * 126.80478 * 0.03206 * 23 22 3 25 25 N 1.30183 * 106.39549 * 179.97438 * 23 22 3 26 26 O 1.20917 * 111.60311 * 359.72213 * 25 23 22 27 27 C 1.34041 * 111.56838 * 0.45005 * 26 25 23 28 28 C 1.50697 * 126.77743 * 179.82551 * 27 26 25 29 29 H 1.08997 * 109.47066 * 63.77914 * 1 2 3 30 30 H 1.09003 * 109.47196 * 183.77387 * 1 2 3 31 31 H 1.08999 * 109.46959 * 303.77743 * 1 2 3 32 32 H 1.09004 * 109.46880 * 240.00486 * 2 1 3 33 33 H 1.08993 * 109.47413 * 120.00249 * 2 1 3 34 34 H 1.08996 * 109.47285 * 88.82646 * 8 7 5 35 35 H 1.09004 * 109.47016 * 208.82920 * 8 7 5 36 36 H 1.09002 * 109.46830 * 328.82687 * 8 7 5 37 37 H 1.08996 * 109.47187 * 210.00049 * 9 7 5 38 38 H 1.08999 * 109.47096 * 330.00714 * 9 7 5 39 39 H 1.08996 * 109.47448 * 299.99954 * 10 9 7 40 40 H 1.08999 * 109.46764 * 60.00576 * 10 9 7 41 41 H 1.08996 * 109.47216 * 300.00218 * 11 10 9 42 42 H 1.09007 * 109.46955 * 60.00425 * 11 10 9 43 43 H 1.09002 * 109.47618 * 95.02808 * 13 12 11 44 44 H 1.09000 * 109.47535 * 215.02898 * 13 12 11 45 45 H 1.09007 * 109.46948 * 335.02630 * 13 12 11 46 46 H 0.97001 * 119.99673 * 180.02562 * 17 16 14 47 47 H 1.09005 * 109.47088 * 89.99989 * 24 23 22 48 48 H 1.08997 * 109.47264 * 209.99776 * 24 23 22 49 49 H 1.09000 * 109.46894 * 330.00768 * 24 23 22 50 50 H 1.09002 * 109.47032 * 269.69006 * 28 27 26 51 51 H 1.08999 * 109.47414 * 29.68530 * 28 27 26 52 52 H 1.08997 * 109.47086 * 149.68797 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6005 1.9833 -0.8382 5 6 1.6490 2.1136 1.2915 6 8 1.4558 1.4477 2.2865 7 7 1.5139 3.4536 1.3405 8 6 1.8332 4.2657 0.1638 9 6 1.0476 4.0982 2.5707 10 6 2.2493 4.4434 3.4526 11 6 1.7623 5.1172 4.7370 12 7 2.9130 5.4484 5.5812 13 6 3.5744 6.7479 5.4412 14 6 3.3702 4.5430 6.5013 15 1 4.4316 4.4291 6.6655 16 6 2.4695 3.7717 7.2230 17 7 2.8674 2.6515 7.7880 18 14 0.6930 4.3234 7.3921 19 1 -0.1327 3.6599 6.3514 20 1 0.1854 3.9527 8.7375 21 1 0.6139 5.7966 7.2219 22 6 3.5411 1.4446 -0.1327 23 6 4.4925 0.8590 0.7338 24 6 4.2090 0.0918 1.9996 25 7 5.6618 1.1128 0.2210 26 8 5.5700 1.7448 -0.8057 27 6 4.2913 2.0073 -1.1101 28 6 3.7874 2.7721 -2.3068 29 1 -0.3633 0.4540 -0.9219 30 1 -0.3634 -1.0255 0.0676 31 1 -0.3633 0.5713 0.8542 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 0.9461 4.3635 -0.4618 35 1 2.1635 5.2541 0.4832 36 1 2.6279 3.7835 -0.4056 37 1 0.5066 5.0107 2.3202 38 1 0.3856 3.4193 3.1082 39 1 2.7902 3.5310 3.7031 40 1 2.9112 5.1224 2.9151 41 1 1.2216 6.0298 4.4862 42 1 1.1001 4.4386 5.2747 43 1 3.1669 7.4440 6.1743 44 1 4.6452 6.6305 5.6077 45 1 3.4033 7.1363 4.4371 46 1 2.2379 2.1123 8.2920 47 1 4.0947 -0.9666 1.7651 48 1 5.0369 0.2221 2.6965 49 1 3.2905 0.4648 2.4525 50 1 3.7125 3.8303 -2.0565 51 1 4.4805 2.6438 -3.1383 52 1 2.8050 2.3955 -2.5913 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273571957.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:15 Heat of formation + Delta-G solvation = 15.909413 kcal Electronic energy + Delta-G solvation = -31588.873427 eV Core-core repulsion = 27591.631193 eV Total energy + Delta-G solvation = -3997.242234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -46.06828 -41.30221 -38.30996 -37.10856 -36.70806 -35.00579 -34.00290 -33.93209 -32.75116 -29.99709 -29.54349 -28.51379 -28.01275 -27.68225 -26.61032 -24.06199 -23.49462 -22.67054 -22.22271 -21.18301 -19.99089 -18.86640 -18.76665 -18.51963 -17.71308 -17.40473 -17.01835 -16.64710 -16.05713 -15.48261 -15.41303 -15.23686 -15.09000 -14.92212 -14.59039 -14.44928 -14.37026 -14.16933 -14.03413 -13.97231 -13.80972 -13.45403 -13.39809 -13.33724 -13.27663 -13.10996 -12.85326 -12.76246 -12.48964 -12.46338 -12.33986 -12.26987 -12.21445 -11.95837 -11.77794 -11.74862 -11.37347 -11.12671 -10.69501 -10.66785 -10.07817 -9.65905 -8.77629 -8.24948 -5.66099 0.43623 1.03597 1.25982 1.34345 1.47364 1.59607 2.05077 2.22255 2.37893 2.99940 3.09982 3.40252 3.43017 3.50905 3.71344 3.82472 3.97894 4.10657 4.19986 4.24208 4.28458 4.33234 4.40189 4.45137 4.47543 4.53589 4.54672 4.62584 4.66731 4.67229 4.69530 4.72490 4.76027 4.80312 4.84605 4.90454 4.93085 4.99099 5.05431 5.07620 5.10225 5.18736 5.28272 5.31318 5.35894 5.39551 5.60152 5.89645 6.09510 6.41512 6.95620 7.20819 7.28745 7.58969 7.99064 8.95077 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012303 B = 0.003728 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.286558 B = 7509.572862 C = 7726.031354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.011 4.011 4 H 0.144 0.856 5 C 0.509 3.491 6 O -0.571 6.571 7 N -0.614 5.614 8 C 0.061 3.939 9 C 0.122 3.878 10 C -0.128 4.128 11 C 0.136 3.864 12 N -0.629 5.629 13 C 0.125 3.875 14 C -0.266 4.266 15 H 0.030 0.970 16 C -0.023 4.023 17 N -0.952 5.952 18 Si 0.953 3.047 19 H -0.276 1.276 20 H -0.306 1.306 21 H -0.249 1.249 22 C -0.207 4.207 23 C 0.018 3.982 24 C -0.090 4.090 25 N -0.400 5.400 26 O 0.097 5.903 27 C -0.005 4.005 28 C -0.082 4.082 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.032 0.968 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.052 0.948 39 H 0.012 0.988 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.025 0.975 43 H 0.018 0.982 44 H 0.027 0.973 45 H 0.070 0.930 46 H 0.262 0.738 47 H 0.093 0.907 48 H 0.055 0.945 49 H 0.083 0.917 50 H 0.112 0.888 51 H 0.105 0.895 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.507 3.203 -30.005 30.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.032 4.032 4 H 0.161 0.839 5 C 0.298 3.702 6 O -0.450 6.450 7 N -0.346 5.346 8 C -0.080 4.080 9 C -0.002 4.002 10 C -0.169 4.169 11 C 0.011 3.989 12 N -0.354 5.354 13 C -0.019 4.019 14 C -0.396 4.396 15 H 0.047 0.953 16 C -0.219 4.219 17 N -0.596 5.596 18 Si 0.781 3.219 19 H -0.203 1.203 20 H -0.234 1.234 21 H -0.173 1.173 22 C -0.212 4.212 23 C -0.140 4.140 24 C -0.147 4.147 25 N -0.107 5.107 26 O 0.033 5.967 27 C -0.069 4.069 28 C -0.139 4.139 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.135 0.865 38 H 0.070 0.930 39 H 0.031 0.969 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.043 0.957 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.071 0.929 47 H 0.112 0.888 48 H 0.074 0.926 49 H 0.101 0.899 50 H 0.131 0.869 51 H 0.124 0.876 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.362 2.515 -29.032 29.630 hybrid contribution -0.722 -0.538 1.477 1.730 sum -6.084 1.976 -27.555 28.288 Atomic orbital electron populations 1.21753 0.94311 1.02425 1.01996 1.21459 0.96930 0.93263 1.02900 1.19690 0.88421 0.98930 0.96208 0.83889 1.21093 0.76143 0.82393 0.90609 1.90698 1.51251 1.64711 1.38295 1.48013 1.65984 1.06141 1.14443 1.22305 1.02677 0.96229 0.86765 1.21424 0.95499 0.98435 0.84841 1.22211 0.98464 0.99322 0.96871 1.21224 0.89309 0.98112 0.90281 1.44192 1.36326 1.14568 1.40272 1.21170 0.95832 0.85320 0.99606 1.18616 0.91242 1.14886 1.14849 0.95263 1.26188 1.03005 0.96091 0.96640 1.70012 1.37398 1.13573 1.38618 0.85696 0.80580 0.80031 0.75585 1.20315 1.23447 1.17311 1.20501 0.96404 1.06767 0.97526 1.23588 0.89036 1.01486 0.99898 1.20358 1.03064 0.99824 0.91497 1.73864 1.23756 1.13874 0.99194 1.84770 1.28281 1.53058 1.30638 1.25108 0.82379 0.99510 0.99926 1.20854 1.03471 0.99504 0.90046 0.89964 0.91899 0.94889 0.88979 0.93236 0.88731 0.89756 0.90352 0.86527 0.92979 0.96912 0.91425 0.90072 0.95653 0.96400 0.95385 0.91164 0.92911 0.88839 0.92591 0.89890 0.86942 0.87607 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.76 71.98 0.70 -1.96 16 2 C -0.11 -2.17 4.95 30.60 0.15 -2.02 16 3 C -0.01 -0.22 1.67 -12.29 -0.02 -0.24 16 4 H 0.14 1.50 6.09 -2.38 -0.01 1.48 16 5 C 0.51 14.84 5.49 87.66 0.48 15.32 16 6 O -0.57 -22.92 12.65 -3.02 -0.04 -22.96 16 7 N -0.61 -15.23 2.87 -846.76 -2.43 -17.66 16 8 C 0.06 0.78 9.77 127.77 1.25 2.03 16 9 C 0.12 3.61 5.37 86.38 0.46 4.07 16 10 C -0.13 -4.92 5.86 30.60 0.18 -4.74 16 11 C 0.14 5.80 4.46 86.38 0.39 6.18 16 12 N -0.63 -31.18 2.47 -726.93 -1.79 -32.97 16 13 C 0.12 4.95 10.69 127.77 1.37 6.31 16 14 C -0.27 -16.31 9.95 84.03 0.84 -15.48 16 15 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 16 C -0.02 -1.44 5.33 84.86 0.45 -0.99 16 17 N -0.95 -64.06 13.97 21.65 0.30 -63.76 16 18 Si 0.95 49.04 24.97 68.60 1.71 50.76 16 19 H -0.28 -13.71 6.70 99.48 0.67 -13.04 16 20 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 21 H -0.25 -11.84 7.11 99.48 0.71 -11.14 16 22 C -0.21 -4.75 4.28 -19.74 -0.08 -4.83 16 23 C 0.02 0.56 7.20 43.58 0.31 0.87 16 24 C -0.09 -3.12 9.23 71.24 0.66 -2.46 16 25 N -0.40 -12.84 12.07 -49.55 -0.60 -13.44 16 26 O 0.10 2.42 11.20 71.63 0.80 3.22 16 27 C -0.01 -0.09 6.90 25.04 0.17 0.08 16 28 C -0.08 -0.34 9.19 71.24 0.65 0.31 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.03 0.79 6.84 -2.39 -0.02 0.77 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.33 6.41 -2.39 -0.02 1.31 16 34 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 0.96 8.06 -2.38 -0.02 0.95 16 36 H 0.08 0.84 3.33 -2.39 -0.01 0.83 16 37 H 0.12 2.42 8.07 -2.39 -0.02 2.40 16 38 H 0.05 1.87 7.48 -2.39 -0.02 1.86 16 39 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 42 H 0.03 1.23 3.28 -2.38 -0.01 1.22 16 43 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.03 1.13 8.08 -2.39 -0.02 1.12 16 45 H 0.07 2.19 8.03 -2.38 -0.02 2.18 16 46 H 0.26 16.70 8.31 -92.71 -0.77 15.93 16 47 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 48 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 49 H 0.08 3.30 5.00 -2.39 -0.01 3.29 16 50 H 0.11 0.11 7.18 -2.39 -0.02 0.09 16 51 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 52 H 0.12 -0.09 7.39 -2.39 -0.02 -0.10 16 Total: -1.00 -89.94 402.32 6.78 -83.15 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.87 Total: 11.20 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 7.96 Total: 2.47 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -4.52 Total: -127.84 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.76 Total: -19.73 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 1.71 Total: 50.76 kcal Total: -89.94 6.78 -83.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273571957.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.062 kcal (2) G-P(sol) polarization free energy of solvation -89.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds