Wall clock time and date at job start Tue Mar 31 2020 19:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34771 * 120.00316 * 2 1 4 4 O 1.21286 * 119.99611 * 4.29312 * 3 2 1 5 5 C 1.50697 * 120.00119 * 184.29072 * 3 2 1 6 6 C 1.52996 * 109.47187 * 202.44303 * 5 3 2 7 7 C 1.53005 * 109.46929 * 82.44460 * 5 3 2 8 8 N 1.46895 * 109.47514 * 322.44849 * 5 3 2 9 9 C 1.47658 * 111.00273 * 191.46867 * 8 5 3 10 10 C 1.54524 * 107.04890 * 123.12172 * 9 8 5 11 11 C 1.54431 * 102.64136 * 22.93562 * 10 9 8 12 12 H 1.08995 * 110.81063 * 80.38352 * 11 10 9 13 13 C 1.48272 * 110.99470 * 312.03782 * 8 5 3 14 14 H 1.09001 * 111.35705 * 91.92497 * 13 8 5 15 15 C 1.53113 * 108.11630 * 329.40942 * 13 8 5 16 16 C 1.52887 * 109.33411 * 182.70491 * 15 13 8 17 17 C 1.50338 * 109.30941 * 52.84958 * 16 15 13 18 18 O 1.21285 * 118.80184 * 158.33855 * 17 16 15 19 19 N 1.33344 * 122.40059 * 338.31986 * 17 16 15 20 20 C 1.46503 * 117.29057 * 179.77938 * 19 17 16 21 21 C 1.53002 * 109.46967 * 90.00561 * 20 19 17 22 22 C 1.50697 * 109.46781 * 180.02562 * 21 20 19 23 23 H 1.08000 * 120.00681 * 359.97438 * 22 21 20 24 24 C 1.37881 * 119.99548 * 179.97438 * 22 21 20 25 25 N 1.31520 * 119.99584 * 179.97438 * 24 22 21 26 26 Si 1.86793 * 120.00296 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47482 * 89.99836 * 26 24 22 28 28 H 1.48500 * 109.47260 * 209.99730 * 26 24 22 29 29 H 1.48499 * 109.47043 * 329.99737 * 26 24 22 30 30 H 1.09000 * 109.47278 * 59.99646 * 1 2 3 31 31 H 1.08997 * 109.47722 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46826 * 299.99882 * 1 2 3 33 33 H 0.97003 * 119.99413 * 180.02562 * 2 1 3 34 34 H 1.08999 * 109.47155 * 139.80290 * 6 5 3 35 35 H 1.09002 * 109.47069 * 259.79698 * 6 5 3 36 36 H 1.08993 * 109.47553 * 19.80011 * 6 5 3 37 37 H 1.08994 * 109.47422 * 294.99945 * 7 5 3 38 38 H 1.09008 * 109.46803 * 55.00117 * 7 5 3 39 39 H 1.09002 * 109.47219 * 174.99414 * 7 5 3 40 40 H 1.08994 * 109.91870 * 242.46997 * 9 8 5 41 41 H 1.09003 * 109.91626 * 3.77376 * 9 8 5 42 42 H 1.09008 * 110.78407 * 141.27674 * 10 9 8 43 43 H 1.09005 * 110.78466 * 264.52474 * 10 9 8 44 44 H 1.09001 * 109.49360 * 62.74752 * 15 13 8 45 45 H 1.09004 * 109.49667 * 302.66354 * 15 13 8 46 46 H 1.09006 * 109.50039 * 292.90098 * 16 15 13 47 47 H 1.09005 * 109.49974 * 172.80375 * 16 15 13 48 48 H 1.09004 * 109.46815 * 210.00040 * 20 19 17 49 49 H 1.08994 * 109.47054 * 330.00228 * 20 19 17 50 50 H 1.08997 * 109.46538 * 299.99539 * 21 20 19 51 51 H 1.08994 * 109.47506 * 59.99943 * 21 20 19 52 52 H 0.97006 * 119.99922 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5350 2.2160 0.0786 5 6 3.6427 1.1689 -0.0976 6 6 4.1890 2.4812 0.4683 7 6 4.0587 1.0334 -1.5638 8 7 4.1848 0.0407 0.6712 9 6 5.6480 0.1616 0.8283 10 6 5.9438 0.1447 2.3449 11 6 4.7017 -0.5674 2.9235 12 1 4.7878 -1.6482 2.8118 13 6 3.5742 -0.0245 2.0208 14 1 2.6949 -0.6687 2.0280 15 6 3.2213 1.4013 2.4532 16 6 2.6506 1.3736 3.8713 17 6 3.6033 0.6434 4.7764 18 8 3.5463 0.8465 5.9708 19 7 4.5085 -0.2197 4.3141 20 6 5.3841 -0.8649 5.2956 21 6 4.7373 -2.1641 5.7799 22 6 5.6377 -2.8274 6.7899 23 1 6.5775 -2.3685 7.0593 24 6 5.2616 -4.0203 7.3703 25 7 6.0477 -4.5994 8.2514 26 14 3.6365 -4.8144 6.9040 27 1 3.8442 -5.7270 5.7510 28 1 3.1138 -5.5875 8.0591 29 1 2.6594 -3.7602 6.5311 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.9499 -0.8401 -0.0004 34 1 5.0899 2.2798 1.0480 35 1 4.4284 3.1586 -0.3514 36 1 3.4382 2.9400 1.1115 37 1 3.7464 0.0600 -1.9417 38 1 3.5841 1.8203 -2.1503 39 1 5.1420 1.1239 -1.6440 40 1 6.1442 -0.6792 0.3438 41 1 5.9918 1.1001 0.3934 42 1 6.8497 -0.4237 2.5559 43 1 6.0264 1.1595 2.7342 44 1 2.4793 1.8153 1.7705 45 1 4.1187 2.0198 2.4343 46 1 1.6885 0.8612 3.8663 47 1 2.5178 2.3943 4.2301 48 1 6.3457 -1.0881 4.8334 49 1 5.5348 -0.1962 6.1430 50 1 3.7757 -1.9409 6.2421 51 1 4.5866 -2.8328 4.9325 52 1 5.7833 -5.4389 8.6595 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273839400.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:51 Heat of formation + Delta-G solvation = -18.656921 kcal Electronic energy + Delta-G solvation = -32488.683814 eV Core-core repulsion = 28489.942671 eV Total energy + Delta-G solvation = -3998.741143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.30277 -40.02107 -38.53130 -35.87470 -34.98033 -34.26256 -33.37690 -32.62304 -30.25365 -29.43047 -28.25717 -28.07056 -27.12174 -25.09737 -23.72557 -23.18073 -21.85740 -21.36447 -20.52073 -19.75835 -18.07293 -18.02040 -16.93617 -16.76886 -16.53229 -16.27951 -15.45685 -15.35387 -15.11600 -14.95784 -14.71959 -14.27032 -14.01974 -13.80005 -13.58139 -13.24815 -13.06090 -12.91111 -12.86046 -12.69099 -12.63909 -12.53827 -12.35330 -12.25133 -11.93660 -11.77714 -11.71550 -11.59471 -11.50913 -11.07656 -10.94650 -10.91613 -10.56416 -10.31842 -10.07458 -10.01389 -9.82853 -9.42107 -9.32407 -9.10096 -8.81026 -8.54355 -8.23028 -6.05271 -4.03496 2.25768 2.88844 2.97300 3.14476 3.28991 3.37654 3.43306 3.59932 4.13396 4.18731 4.41712 4.45063 4.54849 4.59970 4.66215 4.72486 4.90496 4.95973 5.00472 5.05941 5.11934 5.17502 5.20436 5.25419 5.29418 5.36651 5.39549 5.44844 5.49998 5.51733 5.62667 5.64734 5.72917 5.75078 5.79572 5.91706 5.95170 6.00639 6.07219 6.13930 6.37145 6.42175 6.50291 6.65968 6.70787 7.18388 7.23245 7.38315 7.76028 7.88949 7.90529 8.49143 8.56023 8.98336 9.56985 11.08025 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015538 B = 0.003552 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.550273 B = 7881.709420 C = 8150.878778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.726 5.726 3 C 0.534 3.466 4 O -0.541 6.541 5 C 0.085 3.915 6 C -0.190 4.190 7 C -0.132 4.132 8 N -0.512 5.512 9 C 0.038 3.962 10 C -0.156 4.156 11 C 0.146 3.854 12 H 0.101 0.899 13 C 0.059 3.941 14 H 0.105 0.895 15 C -0.184 4.184 16 C -0.132 4.132 17 C 0.511 3.489 18 O -0.543 6.543 19 N -0.592 5.592 20 C 0.118 3.882 21 C -0.020 4.020 22 C -0.518 4.518 23 H 0.073 0.927 24 C 0.069 3.931 25 N -0.902 5.902 26 Si 0.879 3.121 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.267 1.267 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.412 0.588 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.068 0.932 49 H 0.081 0.919 50 H 0.021 0.979 51 H 0.009 0.991 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 10.914 -24.116 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.378 5.378 3 C 0.321 3.679 4 O -0.419 6.419 5 C -0.008 4.008 6 C -0.248 4.248 7 C -0.189 4.189 8 N -0.237 5.237 9 C -0.090 4.090 10 C -0.195 4.195 11 C 0.040 3.960 12 H 0.119 0.881 13 C -0.049 4.049 14 H 0.123 0.877 15 C -0.222 4.222 16 C -0.173 4.173 17 C 0.298 3.702 18 O -0.421 6.421 19 N -0.323 5.323 20 C -0.003 4.003 21 C -0.058 4.058 22 C -0.556 4.556 23 H 0.091 0.909 24 C -0.132 4.132 25 N -0.541 5.541 26 Si 0.707 3.293 27 H -0.203 1.203 28 H -0.213 1.213 29 H -0.191 1.191 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.248 0.752 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.116 0.884 48 H 0.086 0.914 49 H 0.100 0.900 50 H 0.039 0.961 51 H 0.028 0.972 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.362 11.163 -23.650 26.915 hybrid contribution -0.438 -0.368 0.248 0.624 sum -6.800 10.795 -23.402 26.654 Atomic orbital electron populations 1.21587 0.79662 1.02477 1.02300 1.45910 1.07644 1.09313 1.74885 1.20205 0.89416 0.83777 0.74521 1.90733 1.69818 1.31520 1.49839 1.21440 0.91232 0.91444 0.96708 1.23243 1.02652 0.96458 1.02445 1.21817 1.02367 1.02876 0.91877 1.64119 1.05427 1.39731 1.14410 1.23009 0.87337 1.02585 0.96035 1.23215 0.99605 1.01812 0.94907 1.21448 0.93540 1.00355 0.80664 0.88112 1.23019 0.97842 0.96665 0.87401 0.87744 1.23484 1.03502 0.97880 0.97301 1.21603 0.99013 1.02195 0.94465 1.20042 0.81525 0.79499 0.89117 1.90748 1.70186 1.64767 1.16374 1.47112 1.35845 1.42577 1.06811 1.21719 0.91794 0.95782 0.91028 1.19817 0.97473 0.92286 0.96266 1.20967 1.05922 1.06176 1.22574 0.90885 1.24971 0.96764 0.96889 0.94567 1.69911 1.37285 1.18332 1.28551 0.86777 0.84908 0.79514 0.78107 1.20319 1.21315 1.19127 0.92287 0.90483 0.92066 0.75247 0.90515 0.91979 0.89419 0.91201 0.91605 0.91107 0.89305 0.91015 0.89457 0.90836 0.88008 0.89480 0.88903 0.88442 0.91356 0.90027 0.96101 0.97242 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.71 59.85 0.64 1.22 16 2 N -0.73 -5.75 4.75 -67.08 -0.32 -6.07 16 3 C 0.53 5.27 4.04 -10.99 -0.04 5.23 16 4 O -0.54 -7.09 14.77 5.55 0.08 -7.01 16 5 C 0.08 0.69 0.59 -132.76 -0.08 0.61 16 6 C -0.19 -1.62 6.47 37.16 0.24 -1.38 16 7 C -0.13 -0.86 8.19 37.16 0.30 -0.55 16 8 N -0.51 -4.16 4.42 -208.86 -0.92 -5.09 16 9 C 0.04 0.29 5.43 -2.61 -0.01 0.27 16 10 C -0.16 -1.55 5.62 -25.18 -0.14 -1.69 16 11 C 0.15 1.81 3.12 -67.50 -0.21 1.60 16 12 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 13 C 0.06 0.61 2.48 -66.22 -0.16 0.44 16 14 H 0.10 1.08 7.04 -51.93 -0.37 0.72 16 15 C -0.18 -2.00 2.93 -26.73 -0.08 -2.08 16 16 C -0.13 -1.75 6.08 -28.12 -0.17 -1.92 16 17 C 0.51 9.02 7.47 -11.80 -0.09 8.93 16 18 O -0.54 -12.19 16.21 5.55 0.09 -12.10 16 19 N -0.59 -9.78 2.49 -166.38 -0.41 -10.19 16 20 C 0.12 2.38 5.02 -4.04 -0.02 2.36 16 21 C -0.02 -0.49 4.35 -27.88 -0.12 -0.61 16 22 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 23 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 24 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 25 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 26 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.41 2.77 7.62 -40.82 -0.31 2.46 16 34 H 0.08 0.62 3.86 -51.93 -0.20 0.42 16 35 H 0.06 0.48 7.71 -51.93 -0.40 0.08 16 36 H 0.09 0.90 4.70 -51.93 -0.24 0.66 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.07 0.39 7.37 -51.93 -0.38 0.01 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.48 5.22 -51.93 -0.27 0.21 16 42 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 43 H 0.07 0.77 7.02 -51.93 -0.36 0.41 16 44 H 0.10 1.15 2.81 -51.93 -0.15 1.01 16 45 H 0.09 0.94 4.05 -51.93 -0.21 0.72 16 46 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.07 1.26 7.79 -51.93 -0.40 0.86 16 49 H 0.08 1.83 7.14 -51.93 -0.37 1.46 16 50 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 51 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 52 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 377.26 15.07 5.69 5.69 Total: -1.00 -35.14 377.26 -8.32 -43.46 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.25 Total: 1.90 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -0.38 Total: -0.82 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.88 Total: -48.55 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.17 Total: -19.10 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.14 -8.32 -43.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273839400.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.803 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds