Wall clock time and date at job start Tue Mar 31 2020 19:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34771 * 120.00316 * 2 1 4 4 O 1.21286 * 119.99611 * 4.29312 * 3 2 1 5 5 C 1.50697 * 120.00119 * 184.29072 * 3 2 1 6 6 C 1.52996 * 109.47187 * 202.44303 * 5 3 2 7 7 C 1.53005 * 109.46929 * 82.44460 * 5 3 2 8 8 N 1.46895 * 109.47514 * 322.44849 * 5 3 2 9 9 C 1.47658 * 111.00273 * 191.46867 * 8 5 3 10 10 C 1.54524 * 107.04890 * 123.12172 * 9 8 5 11 11 C 1.54431 * 102.64136 * 22.93562 * 10 9 8 12 12 H 1.08995 * 110.81063 * 80.38352 * 11 10 9 13 13 C 1.48272 * 110.99470 * 312.03782 * 8 5 3 14 14 H 1.09001 * 111.35705 * 91.92497 * 13 8 5 15 15 C 1.53113 * 108.11630 * 329.40942 * 13 8 5 16 16 C 1.52887 * 109.33411 * 182.70491 * 15 13 8 17 17 C 1.50338 * 109.30941 * 52.84958 * 16 15 13 18 18 O 1.21285 * 118.80184 * 158.33855 * 17 16 15 19 19 N 1.33344 * 122.40059 * 338.31986 * 17 16 15 20 20 C 1.46503 * 117.29057 * 179.77938 * 19 17 16 21 21 C 1.53002 * 109.46967 * 90.00561 * 20 19 17 22 22 C 1.50697 * 109.46781 * 180.02562 * 21 20 19 23 23 H 1.08000 * 120.00681 * 359.97438 * 22 21 20 24 24 C 1.37881 * 119.99548 * 179.97438 * 22 21 20 25 25 N 1.31520 * 119.99584 * 179.97438 * 24 22 21 26 26 Si 1.86793 * 120.00296 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47482 * 89.99836 * 26 24 22 28 28 H 1.48500 * 109.47260 * 209.99730 * 26 24 22 29 29 H 1.48499 * 109.47043 * 329.99737 * 26 24 22 30 30 H 1.09000 * 109.47278 * 59.99646 * 1 2 3 31 31 H 1.08997 * 109.47722 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46826 * 299.99882 * 1 2 3 33 33 H 0.97003 * 119.99413 * 180.02562 * 2 1 3 34 34 H 1.08999 * 109.47155 * 139.80290 * 6 5 3 35 35 H 1.09002 * 109.47069 * 259.79698 * 6 5 3 36 36 H 1.08993 * 109.47553 * 19.80011 * 6 5 3 37 37 H 1.08994 * 109.47422 * 294.99945 * 7 5 3 38 38 H 1.09008 * 109.46803 * 55.00117 * 7 5 3 39 39 H 1.09002 * 109.47219 * 174.99414 * 7 5 3 40 40 H 1.08994 * 109.91870 * 242.46997 * 9 8 5 41 41 H 1.09003 * 109.91626 * 3.77376 * 9 8 5 42 42 H 1.09008 * 110.78407 * 141.27674 * 10 9 8 43 43 H 1.09005 * 110.78466 * 264.52474 * 10 9 8 44 44 H 1.09001 * 109.49360 * 62.74752 * 15 13 8 45 45 H 1.09004 * 109.49667 * 302.66354 * 15 13 8 46 46 H 1.09006 * 109.50039 * 292.90098 * 16 15 13 47 47 H 1.09005 * 109.49974 * 172.80375 * 16 15 13 48 48 H 1.09004 * 109.46815 * 210.00040 * 20 19 17 49 49 H 1.08994 * 109.47054 * 330.00228 * 20 19 17 50 50 H 1.08997 * 109.46538 * 299.99539 * 21 20 19 51 51 H 1.08994 * 109.47506 * 59.99943 * 21 20 19 52 52 H 0.97006 * 119.99922 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5350 2.2160 0.0786 5 6 3.6427 1.1689 -0.0976 6 6 4.1890 2.4812 0.4683 7 6 4.0587 1.0334 -1.5638 8 7 4.1848 0.0407 0.6712 9 6 5.6480 0.1616 0.8283 10 6 5.9438 0.1447 2.3449 11 6 4.7017 -0.5674 2.9235 12 1 4.7878 -1.6482 2.8118 13 6 3.5742 -0.0245 2.0208 14 1 2.6949 -0.6687 2.0280 15 6 3.2213 1.4013 2.4532 16 6 2.6506 1.3736 3.8713 17 6 3.6033 0.6434 4.7764 18 8 3.5463 0.8465 5.9708 19 7 4.5085 -0.2197 4.3141 20 6 5.3841 -0.8649 5.2956 21 6 4.7373 -2.1641 5.7799 22 6 5.6377 -2.8274 6.7899 23 1 6.5775 -2.3685 7.0593 24 6 5.2616 -4.0203 7.3703 25 7 6.0477 -4.5994 8.2514 26 14 3.6365 -4.8144 6.9040 27 1 3.8442 -5.7270 5.7510 28 1 3.1138 -5.5875 8.0591 29 1 2.6594 -3.7602 6.5311 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.9499 -0.8401 -0.0004 34 1 5.0899 2.2798 1.0480 35 1 4.4284 3.1586 -0.3514 36 1 3.4382 2.9400 1.1115 37 1 3.7464 0.0600 -1.9417 38 1 3.5841 1.8203 -2.1503 39 1 5.1420 1.1239 -1.6440 40 1 6.1442 -0.6792 0.3438 41 1 5.9918 1.1001 0.3934 42 1 6.8497 -0.4237 2.5559 43 1 6.0264 1.1595 2.7342 44 1 2.4793 1.8153 1.7705 45 1 4.1187 2.0198 2.4343 46 1 1.6885 0.8612 3.8663 47 1 2.5178 2.3943 4.2301 48 1 6.3457 -1.0881 4.8334 49 1 5.5348 -0.1962 6.1430 50 1 3.7757 -1.9409 6.2421 51 1 4.5866 -2.8328 4.9325 52 1 5.7833 -5.4389 8.6595 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273839400.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:50 Heat of formation + Delta-G solvation = -44.882883 kcal Electronic energy + Delta-G solvation = -32489.821057 eV Core-core repulsion = 28489.942671 eV Total energy + Delta-G solvation = -3999.878386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.14802 -41.17180 -39.52508 -37.16489 -35.68918 -35.67129 -34.56608 -34.20316 -31.95575 -30.27882 -29.17185 -28.87379 -27.77239 -26.84004 -24.62115 -24.09467 -23.21872 -22.41707 -21.83128 -20.44983 -19.43420 -18.89402 -18.65020 -17.90425 -17.64845 -17.00650 -16.66755 -16.55298 -16.19551 -16.03654 -15.84903 -15.54091 -14.98286 -14.87564 -14.81974 -14.64635 -14.36111 -14.03676 -13.89971 -13.67192 -13.51954 -13.36619 -13.15466 -13.04258 -12.97938 -12.92908 -12.71138 -12.67581 -12.59793 -12.33552 -12.28799 -11.96635 -11.90340 -11.86060 -11.65280 -11.51708 -11.27896 -10.82462 -10.79543 -10.57709 -10.06070 -9.68756 -9.50347 -8.32824 -6.37269 1.29668 1.34687 1.45883 1.52070 1.58462 1.94712 2.27527 2.32769 2.72857 3.02265 3.26912 3.39632 3.57441 3.61855 3.74854 3.95806 4.02880 4.06008 4.17349 4.18915 4.24335 4.35290 4.36930 4.48674 4.52237 4.58661 4.64059 4.65353 4.69514 4.72513 4.77956 4.81062 4.86265 4.87197 4.90383 4.95616 4.97408 5.07213 5.17093 5.23090 5.27886 5.30828 5.34473 5.47234 5.48164 5.64574 5.69944 5.85621 6.21527 6.53230 6.55474 6.68895 7.15402 7.21923 7.27518 8.83721 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015538 B = 0.003552 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.550273 B = 7881.709420 C = 8150.878778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.718 5.718 3 C 0.529 3.471 4 O -0.578 6.578 5 C 0.087 3.913 6 C -0.190 4.190 7 C -0.128 4.128 8 N -0.499 5.499 9 C 0.043 3.957 10 C -0.152 4.152 11 C 0.133 3.867 12 H 0.101 0.899 13 C 0.066 3.934 14 H 0.109 0.891 15 C -0.173 4.173 16 C -0.123 4.123 17 C 0.504 3.496 18 O -0.601 6.601 19 N -0.585 5.585 20 C 0.131 3.869 21 C -0.009 4.009 22 C -0.531 4.531 23 H 0.037 0.963 24 C 0.010 3.990 25 N -0.946 5.946 26 Si 0.949 3.051 27 H -0.253 1.253 28 H -0.284 1.284 29 H -0.264 1.264 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.419 0.581 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.087 0.913 49 H 0.050 0.950 50 H -0.003 1.003 51 H 0.028 0.972 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.477 10.236 -27.585 30.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.369 5.369 3 C 0.316 3.684 4 O -0.459 6.459 5 C -0.005 4.005 6 C -0.248 4.248 7 C -0.186 4.186 8 N -0.223 5.223 9 C -0.084 4.084 10 C -0.191 4.191 11 C 0.028 3.972 12 H 0.119 0.881 13 C -0.043 4.043 14 H 0.126 0.874 15 C -0.211 4.211 16 C -0.164 4.164 17 C 0.293 3.707 18 O -0.482 6.482 19 N -0.314 5.314 20 C 0.008 3.992 21 C -0.047 4.047 22 C -0.569 4.569 23 H 0.056 0.944 24 C -0.187 4.187 25 N -0.587 5.587 26 Si 0.773 3.227 27 H -0.177 1.177 28 H -0.209 1.209 29 H -0.188 1.188 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.066 0.934 33 H 0.257 0.743 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.123 0.877 45 H 0.109 0.891 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.105 0.895 49 H 0.069 0.931 50 H 0.016 0.984 51 H 0.046 0.954 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.077 10.459 -27.188 29.977 hybrid contribution -0.146 -0.125 1.365 1.379 sum -7.222 10.334 -25.822 28.736 Atomic orbital electron populations 1.21686 0.79094 1.04003 1.01541 1.45923 1.08144 1.09153 1.73675 1.20523 0.90152 0.83659 0.74048 1.90721 1.70645 1.32831 1.51664 1.21476 0.90146 0.91103 0.97823 1.23223 1.02251 0.96778 1.02587 1.21821 1.03347 1.03246 0.90202 1.64203 1.05745 1.39674 1.12715 1.23079 0.86794 1.04315 0.94241 1.23181 0.98392 1.01105 0.96434 1.21777 0.96010 1.00865 0.78501 0.88078 1.22943 0.97327 0.95955 0.88033 0.87367 1.23460 1.03573 0.98558 0.95467 1.21580 0.98135 1.01751 0.94890 1.20841 0.81641 0.79256 0.88930 1.90721 1.71822 1.66678 1.19024 1.47081 1.34701 1.41608 1.08005 1.21290 0.92965 0.93548 0.91415 1.19653 0.95478 0.94103 0.95491 1.21276 1.05442 1.06459 1.23737 0.94440 1.25920 1.00797 0.97585 0.94412 1.70053 1.39553 1.19106 1.29956 0.85679 0.79706 0.78702 0.78654 1.17696 1.20931 1.18802 0.92550 0.87836 0.93356 0.74334 0.89910 0.91067 0.91290 0.90470 0.91834 0.89559 0.87535 0.89376 0.89185 0.91396 0.87726 0.89116 0.87965 0.88031 0.89466 0.93099 0.98413 0.95369 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 10.71 127.77 1.37 2.32 16 2 N -0.72 -9.57 4.75 -484.52 -2.30 -11.87 16 3 C 0.53 9.31 4.04 87.66 0.35 9.66 16 4 O -0.58 -14.43 14.77 -3.05 -0.05 -14.48 16 5 C 0.09 1.16 0.59 2.78 0.00 1.17 16 6 C -0.19 -2.77 6.47 71.98 0.47 -2.30 16 7 C -0.13 -1.21 8.19 71.98 0.59 -0.62 16 8 N -0.50 -6.39 4.42 -814.71 -3.60 -9.99 16 9 C 0.04 0.49 5.43 86.68 0.47 0.96 16 10 C -0.15 -2.62 5.62 31.60 0.18 -2.44 16 11 C 0.13 3.02 3.12 46.27 0.14 3.16 16 12 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 13 C 0.07 1.19 2.48 45.13 0.11 1.30 16 14 H 0.11 1.92 7.04 -2.39 -0.02 1.91 16 15 C -0.17 -3.47 2.93 30.59 0.09 -3.38 16 16 C -0.12 -3.17 6.08 29.70 0.18 -2.99 16 17 C 0.50 17.89 7.47 87.77 0.66 18.54 16 18 O -0.60 -27.96 16.21 -3.05 -0.05 -28.01 16 19 N -0.58 -19.00 2.49 -799.50 -1.99 -20.99 16 20 C 0.13 5.35 5.02 86.38 0.43 5.78 16 21 C -0.01 -0.44 4.35 29.85 0.13 -0.31 16 22 C -0.53 -31.27 9.66 25.60 0.25 -31.02 16 23 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 24 C 0.01 0.61 5.47 84.65 0.46 1.07 16 25 N -0.95 -59.88 13.96 21.45 0.30 -59.59 16 26 Si 0.95 45.34 27.47 68.60 1.88 47.23 16 27 H -0.25 -11.05 7.11 99.48 0.71 -10.34 16 28 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 29 H -0.26 -12.38 6.54 99.48 0.65 -11.73 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.42 4.28 7.62 -92.71 -0.71 3.57 16 34 H 0.08 1.08 3.86 -2.39 -0.01 1.08 16 35 H 0.07 0.91 7.71 -2.39 -0.02 0.89 16 36 H 0.07 1.31 4.70 -2.39 -0.01 1.29 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 0.66 8.14 -2.38 -0.02 0.65 16 39 H 0.09 0.57 7.37 -2.39 -0.02 0.55 16 40 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.09 0.79 5.22 -2.39 -0.01 0.77 16 42 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.07 1.28 7.02 -2.38 -0.02 1.26 16 44 H 0.11 2.20 2.81 -2.39 -0.01 2.19 16 45 H 0.09 1.78 4.05 -2.39 -0.01 1.77 16 46 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 47 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 48 H 0.09 3.21 7.79 -2.39 -0.02 3.19 16 49 H 0.05 2.40 7.14 -2.39 -0.02 2.38 16 50 H 0.00 -0.14 7.20 -2.39 -0.02 -0.15 16 51 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 52 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 Total: -1.00 -79.39 377.26 0.26 -79.13 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.18 Total: 17.68 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 5.88 Total: 0.90 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -7.59 Total: -102.44 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.09 Total: -42.49 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.23 kcal Total: -79.39 0.26 -79.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273839400.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.244 kcal (2) G-P(sol) polarization free energy of solvation -79.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds