Wall clock time and date at job start Tue Mar 31 2020 19:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34772 * 119.99728 * 2 1 4 4 O 1.21280 * 120.00576 * 355.01272 * 3 2 1 5 5 C 1.50699 * 120.00140 * 175.01603 * 3 2 1 6 6 C 1.53001 * 109.47527 * 203.77104 * 5 3 2 7 7 C 1.53006 * 109.47238 * 83.76744 * 5 3 2 8 8 N 1.46898 * 109.46987 * 323.77386 * 5 3 2 9 9 C 1.48655 * 110.99800 * 298.84235 * 8 5 3 10 10 C 1.54640 * 104.63305 * 201.48704 * 9 8 5 11 11 C 1.53255 * 104.67399 * 23.69898 * 10 9 8 12 12 C 1.53615 * 111.05932 * 238.97749 * 11 10 9 13 13 C 1.54707 * 101.50738 * 262.70074 * 12 11 10 14 14 N 1.46880 * 105.52114 * 335.47450 * 13 12 11 15 15 C 1.46494 * 124.37140 * 196.84267 * 14 13 12 16 16 C 1.53008 * 109.46994 * 269.99798 * 15 14 13 17 17 C 1.50705 * 109.47075 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99680 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99985 * 179.97438 * 17 16 15 20 20 N 1.31522 * 119.99999 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00151 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47339 * 89.99815 * 21 19 17 23 23 H 1.48505 * 109.47431 * 209.99894 * 21 19 17 24 24 H 1.48501 * 109.47092 * 329.99917 * 21 19 17 25 25 C 1.34757 * 111.25611 * 16.81921 * 14 13 12 26 26 O 1.21274 * 125.13724 * 178.74190 * 25 14 13 27 27 C 1.48806 * 111.00172 * 183.22852 * 8 5 3 28 28 H 1.08994 * 109.47289 * 300.00288 * 1 2 3 29 29 H 1.08996 * 109.46783 * 60.00791 * 1 2 3 30 30 H 1.08993 * 109.46975 * 180.02562 * 1 2 3 31 31 H 0.96995 * 119.99929 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47316 * 182.49143 * 6 5 3 33 33 H 1.08997 * 109.47151 * 302.49234 * 6 5 3 34 34 H 1.09003 * 109.46683 * 62.49320 * 6 5 3 35 35 H 1.08994 * 109.47202 * 300.00710 * 7 5 3 36 36 H 1.09000 * 109.46727 * 60.00657 * 7 5 3 37 37 H 1.09006 * 109.47082 * 180.02562 * 7 5 3 38 38 H 1.09004 * 110.39933 * 82.70106 * 9 8 5 39 39 H 1.08996 * 110.50863 * 320.32427 * 9 8 5 40 40 H 1.09005 * 110.39837 * 264.89982 * 10 9 8 41 41 H 1.08994 * 110.39893 * 142.50054 * 10 9 8 42 42 H 1.08998 * 111.01859 * 144.64486 * 12 11 10 43 43 H 1.09008 * 111.04957 * 20.77148 * 12 11 10 44 44 H 1.09000 * 110.23655 * 216.45460 * 13 12 11 45 45 H 1.09001 * 110.30796 * 94.52553 * 13 12 11 46 46 H 1.09002 * 109.47251 * 29.99317 * 15 14 13 47 47 H 1.08996 * 109.47688 * 150.00005 * 15 14 13 48 48 H 1.09002 * 109.46729 * 299.99839 * 16 15 14 49 49 H 1.08995 * 109.47008 * 60.00353 * 16 15 14 50 50 H 0.96999 * 120.00344 * 179.97438 * 20 19 17 51 51 H 1.09000 * 110.45944 * 39.46825 * 27 8 5 52 52 H 1.08998 * 110.45586 * 276.90645 * 27 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2156 -0.0913 5 6 3.6416 1.1698 0.1134 6 6 4.1086 2.5147 0.6736 7 6 4.2578 0.9519 -1.2700 8 7 4.0665 0.0900 1.0141 9 6 3.5083 0.2836 2.3782 10 6 4.4365 -0.5404 3.3007 11 6 5.7580 -0.6416 2.5314 12 6 6.1359 -2.1082 2.2739 13 6 7.1259 -2.3796 3.4312 14 7 7.6678 -1.0655 3.8013 15 6 8.8824 -0.8656 4.5955 16 6 8.5176 -0.8114 6.0804 17 6 9.7670 -0.6052 6.8975 18 1 10.7253 -0.5207 6.4066 19 6 9.6866 -0.5232 8.2714 20 7 8.5193 -0.6245 8.8690 21 14 11.2351 -0.2668 9.2841 22 1 11.4765 1.1878 9.4598 23 1 11.0679 -0.9051 10.6145 24 1 12.3921 -0.8794 8.5830 25 6 6.9037 -0.0675 3.3154 26 8 7.1072 1.1153 3.4890 27 6 5.5412 0.1098 1.2120 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 5.1976 2.5331 0.7142 33 1 3.7554 3.3193 0.0287 34 1 3.7053 2.6499 1.6773 35 1 3.9252 -0.0062 -1.6692 36 1 3.9426 1.7531 -1.9384 37 1 5.3448 0.9533 -1.1879 38 1 2.4878 -0.0963 2.4286 39 1 3.5349 1.3373 2.6557 40 1 4.0191 -1.5328 3.4711 41 1 4.5871 -0.0230 4.2481 42 1 6.6249 -2.2218 1.3064 43 1 5.2623 -2.7561 2.3465 44 1 7.9276 -3.0371 3.0952 45 1 6.6044 -2.8246 4.2787 46 1 9.5711 -1.6922 4.4205 47 1 9.3574 0.0710 4.3037 48 1 7.8289 0.0152 6.2554 49 1 8.0428 -1.7481 6.3723 50 1 8.4627 -0.5673 9.8356 51 1 5.9008 1.1355 1.2944 52 1 6.0424 -0.4059 0.3930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273839459.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:23 Heat of formation + Delta-G solvation = -85.236142 kcal Electronic energy + Delta-G solvation = -31001.160650 eV Core-core repulsion = 26999.532415 eV Total energy + Delta-G solvation = -4001.628235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.38976 -41.18401 -39.11873 -37.49674 -36.19326 -35.60384 -35.04762 -33.15942 -30.85402 -30.06923 -29.17265 -28.63346 -27.77767 -26.96139 -25.09373 -23.57259 -23.55096 -22.65024 -21.54881 -20.39554 -19.99050 -18.69424 -18.55896 -17.16058 -17.07114 -16.86641 -16.71410 -16.52829 -16.31531 -16.09723 -15.54593 -15.44205 -15.09940 -15.02525 -14.52440 -14.48837 -14.39366 -14.20996 -13.82240 -13.74864 -13.48676 -13.29636 -13.23846 -13.11675 -13.04385 -12.90941 -12.84932 -12.60882 -12.50216 -12.47445 -12.31625 -12.22404 -12.01229 -11.96062 -11.69718 -11.45453 -11.40908 -10.85605 -10.66288 -10.59983 -10.06493 -9.67778 -9.54702 -8.25796 -6.38735 1.37519 1.40007 1.50543 1.51350 1.57378 2.12241 2.28294 2.39590 2.72394 3.07824 3.28318 3.37466 3.47119 3.71239 3.90282 3.93496 3.98397 4.05181 4.16524 4.31135 4.39388 4.45138 4.48719 4.51081 4.53892 4.61406 4.64462 4.65468 4.71047 4.77936 4.80095 4.82565 4.85905 4.90203 4.94743 4.98559 5.02477 5.11244 5.16620 5.23762 5.25400 5.32944 5.44701 5.48346 5.56773 5.60200 5.70755 5.81678 6.13570 6.31398 6.59329 6.76992 7.22011 7.25759 7.31428 8.86392 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022659 B = 0.002421 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.412602 B =11564.487134 C =11632.343091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.709 5.709 3 C 0.528 3.472 4 O -0.585 6.585 5 C 0.081 3.919 6 C -0.172 4.172 7 C -0.131 4.131 8 N -0.467 5.467 9 C 0.026 3.974 10 C -0.097 4.097 11 C -0.092 4.092 12 C -0.094 4.094 13 C 0.089 3.911 14 N -0.617 5.617 15 C 0.142 3.858 16 C 0.024 3.976 17 C -0.545 4.545 18 H 0.067 0.933 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.970 3.030 22 H -0.278 1.278 23 H -0.279 1.279 24 H -0.256 1.256 25 C 0.508 3.492 26 O -0.587 6.587 27 C 0.052 3.948 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.111 0.889 31 H 0.423 0.577 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.032 0.968 40 H 0.115 0.885 41 H 0.037 0.963 42 H 0.110 0.890 43 H 0.125 0.875 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.050 0.950 48 H -0.031 1.031 49 H 0.001 0.999 50 H 0.264 0.736 51 H 0.044 0.956 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.178 -8.446 -23.270 28.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.361 5.361 3 C 0.314 3.686 4 O -0.465 6.465 5 C -0.013 4.013 6 C -0.231 4.231 7 C -0.189 4.189 8 N -0.192 5.192 9 C -0.102 4.102 10 C -0.135 4.135 11 C -0.096 4.096 12 C -0.131 4.131 13 C -0.033 4.033 14 N -0.349 5.349 15 C 0.020 3.980 16 C -0.014 4.014 17 C -0.583 4.583 18 H 0.085 0.915 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.794 3.206 22 H -0.204 1.204 23 H -0.205 1.205 24 H -0.179 1.179 25 C 0.296 3.704 26 O -0.468 6.468 27 C -0.075 4.075 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.130 0.870 31 H 0.261 0.739 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.050 0.950 40 H 0.133 0.867 41 H 0.056 0.944 42 H 0.128 0.872 43 H 0.144 0.856 44 H 0.119 0.881 45 H 0.084 0.916 46 H 0.111 0.889 47 H 0.069 0.931 48 H -0.012 1.012 49 H 0.019 0.981 50 H 0.073 0.927 51 H 0.062 0.938 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.728 -7.649 -23.291 28.097 hybrid contribution 1.104 1.416 1.927 2.634 sum -12.624 -6.233 -21.364 25.585 Atomic orbital electron populations 1.21684 0.78960 1.04257 1.01223 1.45724 1.08025 1.08861 1.73485 1.20470 0.89422 0.83746 0.74966 1.90690 1.70670 1.33477 1.51661 1.21384 0.91506 0.91175 0.97206 1.22304 1.01774 0.97800 1.01190 1.21810 1.01846 1.03666 0.91543 1.65837 1.06269 1.39345 1.07708 1.23330 0.99874 0.98495 0.88536 1.22165 0.92122 1.02640 0.96565 1.21367 0.93307 0.98999 0.95913 1.22754 1.00129 0.91737 0.98469 1.22506 0.98667 0.83636 0.98499 1.48747 1.25976 1.08666 1.51466 1.21357 0.85081 1.01155 0.90407 1.19207 0.95722 0.94512 0.91932 1.21560 0.94339 1.50096 0.92306 0.91462 1.26030 0.99764 0.94565 0.99500 1.70117 1.26146 1.51013 1.10031 0.85376 0.79164 0.78332 0.77758 1.20353 1.20452 1.17938 1.21246 0.84312 0.85178 0.79665 1.90654 1.74804 1.18332 1.62974 1.23106 0.89167 0.99662 0.95598 0.93603 0.93109 0.87020 0.73924 0.91109 0.91349 0.93592 0.89232 0.91807 0.90277 0.87981 0.95022 0.86652 0.94374 0.87178 0.85643 0.88093 0.91563 0.88871 0.93130 1.01249 0.98065 0.92702 0.93785 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.71 127.77 1.37 2.29 16 2 N -0.71 -9.51 5.10 -484.54 -2.47 -11.98 16 3 C 0.53 10.99 5.79 87.66 0.51 11.50 16 4 O -0.59 -17.34 16.03 -3.03 -0.05 -17.39 16 5 C 0.08 1.48 0.62 2.78 0.00 1.48 16 6 C -0.17 -4.13 7.32 71.98 0.53 -3.60 16 7 C -0.13 -1.73 8.39 71.98 0.60 -1.13 16 8 N -0.47 -7.63 4.53 -836.93 -3.79 -11.42 16 9 C 0.03 0.52 5.55 86.52 0.48 1.00 16 10 C -0.10 -2.18 6.32 31.24 0.20 -1.98 16 11 C -0.09 -2.11 0.83 -52.66 -0.04 -2.15 16 12 C -0.09 -1.36 6.24 31.38 0.20 -1.16 16 13 C 0.09 1.99 7.37 86.89 0.64 2.63 16 14 N -0.62 -21.56 2.94 -818.16 -2.41 -23.97 16 15 C 0.14 6.03 5.88 86.38 0.51 6.54 16 16 C 0.02 1.32 5.30 29.85 0.16 1.48 16 17 C -0.54 -31.43 9.11 25.60 0.23 -31.19 16 18 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 19 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 20 N -0.93 -58.02 13.29 21.45 0.28 -57.73 16 21 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 25 C 0.51 18.48 6.65 87.51 0.58 19.07 16 26 O -0.59 -27.71 17.10 -3.01 -0.05 -27.76 16 27 C 0.05 1.02 4.44 86.06 0.38 1.40 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.42 3.60 8.32 -92.71 -0.77 2.82 16 32 H 0.07 1.72 6.10 -2.39 -0.01 1.70 16 33 H 0.07 1.69 7.78 -2.39 -0.02 1.67 16 34 H 0.05 1.28 5.91 -2.39 -0.01 1.26 16 35 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.95 7.05 -2.38 -0.02 0.93 16 38 H 0.10 1.73 7.65 -2.38 -0.02 1.71 16 39 H 0.03 0.84 5.56 -2.39 -0.01 0.83 16 40 H 0.12 1.87 7.32 -2.38 -0.02 1.85 16 41 H 0.04 1.17 7.76 -2.39 -0.02 1.15 16 42 H 0.11 1.08 7.51 -2.39 -0.02 1.06 16 43 H 0.13 1.09 7.43 -2.38 -0.02 1.07 16 44 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.09 3.42 8.14 -2.39 -0.02 3.41 16 47 H 0.05 2.32 7.95 -2.39 -0.02 2.30 16 48 H -0.03 -1.98 8.14 -2.39 -0.02 -2.00 16 49 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 50 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 51 H 0.04 1.15 4.93 -2.39 -0.01 1.13 16 52 H 0.12 1.65 7.05 -2.39 -0.02 1.64 16 Total: -1.00 -83.89 401.62 0.49 -83.40 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.15 Total: 13.55 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 6.80 Total: 6.60 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -8.39 Total: -105.11 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -0.10 Total: -45.16 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -83.89 0.49 -83.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273839459.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.835 kcal (2) G-P(sol) polarization free energy of solvation -83.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds