Wall clock time and date at job start Tue Mar 31 2020 19:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34782 * 119.99827 * 2 1 4 4 O 1.21280 * 120.00182 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99672 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47044 * 204.99913 * 5 3 2 7 7 C 1.52999 * 109.46900 * 85.00071 * 5 3 2 8 8 N 1.46898 * 109.47531 * 325.00082 * 5 3 2 9 9 C 1.48625 * 110.99848 * 292.80200 * 8 5 3 10 10 C 1.55167 * 103.36039 * 200.84861 * 9 8 5 11 11 C 1.53612 * 102.65801 * 36.58074 * 10 9 8 12 12 C 1.53619 * 110.83598 * 99.48007 * 11 10 9 13 13 C 1.54856 * 101.44592 * 96.71203 * 12 11 10 14 14 N 1.46873 * 105.44283 * 24.83420 * 13 12 11 15 15 C 1.46504 * 124.37221 * 163.10171 * 14 13 12 16 16 C 1.52998 * 109.47083 * 269.72464 * 15 14 13 17 17 C 1.50702 * 109.46585 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00515 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99622 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99824 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99900 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47101 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.46954 * 299.99877 * 21 19 17 24 24 H 1.48501 * 109.47222 * 60.00054 * 21 19 17 25 25 C 1.34761 * 111.25630 * 342.83836 * 14 13 12 26 26 O 1.21274 * 125.12975 * 181.25068 * 25 14 13 27 27 C 1.48180 * 111.00487 * 175.34889 * 8 5 3 28 28 H 1.08999 * 109.47184 * 300.00328 * 1 2 3 29 29 H 1.08997 * 109.46772 * 60.00084 * 1 2 3 30 30 H 1.08998 * 109.46900 * 180.02562 * 1 2 3 31 31 H 0.96995 * 119.99585 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.46813 * 172.80502 * 6 5 3 33 33 H 1.09004 * 109.46960 * 292.80270 * 6 5 3 34 34 H 1.08990 * 109.47102 * 52.80092 * 6 5 3 35 35 H 1.09004 * 109.47492 * 299.99770 * 7 5 3 36 36 H 1.08999 * 109.47476 * 60.00137 * 7 5 3 37 37 H 1.09001 * 109.47227 * 180.02562 * 7 5 3 38 38 H 1.09005 * 110.64245 * 319.31733 * 9 8 5 39 39 H 1.09001 * 110.64686 * 82.21750 * 9 8 5 40 40 H 1.08997 * 110.77446 * 278.28740 * 10 9 8 41 41 H 1.09000 * 110.76948 * 154.86689 * 10 9 8 42 42 H 1.09004 * 111.01966 * 214.95919 * 12 11 10 43 43 H 1.09000 * 111.01937 * 338.79914 * 12 11 10 44 44 H 1.09002 * 110.37077 * 265.79645 * 13 12 11 45 45 H 1.09001 * 110.18211 * 143.77625 * 13 12 11 46 46 H 1.09008 * 109.46739 * 149.72601 * 15 14 13 47 47 H 1.08994 * 109.47166 * 29.72877 * 15 14 13 48 48 H 1.08996 * 109.46943 * 60.00206 * 16 15 14 49 49 H 1.08999 * 109.46854 * 299.99865 * 16 15 14 50 50 H 0.96999 * 120.00690 * 0.02562 * 20 19 17 51 51 H 1.09007 * 110.01581 * 26.35083 * 27 8 5 52 52 H 1.08998 * 110.06025 * 264.97784 * 27 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1557 2.4747 0.6101 7 6 4.1564 1.0412 -1.4362 8 7 4.1353 0.0329 0.7954 9 6 3.8054 0.2087 2.2338 10 6 4.8164 -0.7251 2.9503 11 6 6.0815 -0.5730 2.0924 12 6 7.0672 0.4101 2.7419 13 6 8.0214 -0.5571 3.4849 14 7 7.9280 -1.8315 2.7608 15 6 8.8995 -2.9220 2.8770 16 6 9.9956 -2.7428 1.8248 17 6 10.9945 -3.8649 1.9441 18 1 10.8607 -4.6295 2.6949 19 6 12.0793 -3.9153 1.0945 20 7 12.2420 -2.9845 0.1799 21 14 13.3179 -5.3057 1.2428 22 1 14.3818 -5.1319 0.2214 23 1 13.9243 -5.2860 2.5982 24 1 12.6320 -6.6049 1.0262 25 6 6.8303 -1.8705 1.9800 26 8 6.4971 -2.8113 1.2909 27 6 5.6123 -0.0651 0.7276 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 5.2380 2.4227 0.7283 33 1 3.9015 3.3057 -0.0480 34 1 3.6907 2.6271 1.5840 35 1 3.7932 0.1097 -1.8705 36 1 3.7934 1.8829 -2.0260 37 1 5.2464 1.0407 -1.4358 38 1 3.9560 1.2443 2.5389 39 1 2.7807 -0.1044 2.4342 40 1 4.4642 -1.7566 2.9403 41 1 4.9984 -0.3875 3.9706 42 1 7.6002 0.9864 1.9855 43 1 6.5566 1.0690 3.4442 44 1 7.7010 -0.6865 4.5187 45 1 9.0427 -0.1779 3.4507 46 1 8.3959 -3.8756 2.7184 47 1 9.3448 -2.9073 3.8718 48 1 10.4991 -1.7892 1.9834 49 1 9.5502 -2.7575 0.8301 50 1 11.5991 -2.2622 0.1031 51 1 6.0426 0.9161 0.5266 52 1 5.9050 -0.7676 -0.0527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273839460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:27 Heat of formation + Delta-G solvation = -63.244562 kcal Electronic energy + Delta-G solvation = -31062.880689 eV Core-core repulsion = 27062.206081 eV Total energy + Delta-G solvation = -4000.674608 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.45908 -40.19473 -38.18498 -36.13638 -34.98387 -34.80577 -33.55081 -31.70441 -29.40661 -29.12443 -28.14629 -27.84970 -27.04666 -24.86673 -23.91135 -22.96390 -21.99728 -21.73863 -20.39636 -19.62634 -18.72035 -17.72287 -16.93329 -16.47813 -16.12095 -16.04482 -15.77129 -15.25857 -14.95071 -14.63238 -14.53969 -14.20726 -13.87829 -13.75657 -13.72762 -13.19254 -13.05795 -12.89048 -12.72899 -12.67152 -12.59500 -12.50591 -12.47962 -12.19629 -12.03523 -11.83522 -11.70990 -11.64394 -11.50679 -11.36476 -11.07770 -10.85304 -10.75207 -10.37790 -10.15331 -10.08455 -9.98590 -9.35792 -9.32476 -8.73167 -8.70861 -8.36384 -8.12982 -6.40687 -4.10428 2.36694 2.85800 3.01128 3.38153 3.43073 3.45086 3.54187 3.63111 4.16151 4.22167 4.29087 4.46635 4.53011 4.66788 4.69071 4.69362 4.91198 4.96957 4.97664 5.16934 5.19231 5.20625 5.26605 5.31390 5.37491 5.38043 5.43581 5.47409 5.48086 5.59357 5.60379 5.63309 5.68073 5.78485 5.81484 5.85741 5.94044 5.97304 5.99801 6.18840 6.30859 6.48148 6.57736 6.61336 6.85241 7.24671 7.30083 7.41050 7.64155 8.00907 8.11651 8.40082 8.56974 8.82387 9.62419 11.00235 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021158 B = 0.002481 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.066315 B =11281.147804 C =11473.460714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.723 5.723 3 C 0.533 3.467 4 O -0.546 6.546 5 C 0.080 3.920 6 C -0.169 4.169 7 C -0.140 4.140 8 N -0.501 5.501 9 C 0.026 3.974 10 C -0.097 4.097 11 C -0.105 4.105 12 C -0.124 4.124 13 C 0.102 3.898 14 N -0.614 5.614 15 C 0.135 3.865 16 C 0.000 4.000 17 C -0.603 4.603 18 H 0.050 0.950 19 C 0.017 3.983 20 N -0.910 5.910 21 Si 1.070 2.930 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.287 1.287 25 C 0.527 3.473 26 O -0.522 6.522 27 C 0.058 3.942 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.414 0.586 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.007 0.993 49 H 0.011 0.989 50 H 0.268 0.732 51 H 0.063 0.937 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.093 10.847 4.551 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.375 5.375 3 C 0.318 3.682 4 O -0.422 6.422 5 C -0.013 4.013 6 C -0.227 4.227 7 C -0.198 4.198 8 N -0.227 5.227 9 C -0.101 4.101 10 C -0.135 4.135 11 C -0.110 4.110 12 C -0.162 4.162 13 C -0.022 4.022 14 N -0.347 5.347 15 C 0.015 3.985 16 C -0.038 4.038 17 C -0.642 4.642 18 H 0.069 0.931 19 C -0.187 4.187 20 N -0.546 5.546 21 Si 0.898 3.102 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.213 1.213 25 C 0.313 3.687 26 O -0.397 6.397 27 C -0.069 4.069 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.250 0.750 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.026 0.974 49 H 0.030 0.970 50 H 0.079 0.921 51 H 0.081 0.919 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.518 9.946 3.321 22.156 hybrid contribution -0.756 0.954 1.053 1.610 sum -20.274 10.900 4.374 23.430 Atomic orbital electron populations 1.21542 0.80024 1.02222 1.02043 1.45823 1.07339 1.09576 1.74744 1.20287 0.89149 0.83569 0.75217 1.90695 1.69929 1.31605 1.49992 1.21391 0.91724 0.91456 0.96758 1.22295 1.01359 0.97036 1.02058 1.21875 1.02324 1.03068 0.92503 1.65120 1.11957 1.37540 1.08043 1.23470 0.99929 0.99084 0.87640 1.22314 0.92209 1.01232 0.97749 1.21511 0.96523 0.95702 0.97232 1.22755 0.96400 0.96711 1.00287 1.22084 1.00781 0.83851 0.95446 1.48666 1.24652 1.17285 1.44104 1.21636 0.89033 0.87309 1.00478 1.19522 0.92940 0.97313 0.94035 1.21909 1.10312 1.11085 1.20912 0.93127 1.25867 0.98711 1.01283 0.92875 1.70778 1.38220 1.12659 1.32912 0.83528 0.75802 0.74795 0.76071 1.20726 1.21391 1.21335 1.20108 0.80980 0.88251 0.79361 1.90710 1.70267 1.38086 1.40683 1.22770 0.86792 1.01002 0.96341 0.92439 0.92391 0.90629 0.75048 0.91226 0.90816 0.91640 0.91115 0.91390 0.90829 0.92264 0.89834 0.89943 0.90116 0.89794 0.89378 0.91479 0.90189 0.90970 0.91507 0.97434 0.97024 0.92132 0.91878 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.70 59.85 0.64 1.26 16 2 N -0.72 -6.46 5.61 -67.08 -0.38 -6.83 16 3 C 0.53 5.87 5.99 -10.98 -0.07 5.81 16 4 O -0.55 -7.74 16.23 5.56 0.09 -7.65 16 5 C 0.08 0.77 0.62 -132.76 -0.08 0.69 16 6 C -0.17 -1.54 7.02 37.16 0.26 -1.28 16 7 C -0.14 -1.29 8.26 37.16 0.31 -0.98 16 8 N -0.50 -5.00 4.34 -216.35 -0.94 -5.94 16 9 C 0.03 0.24 5.77 -1.72 -0.01 0.23 16 10 C -0.10 -0.96 6.11 -25.27 -0.15 -1.12 16 11 C -0.11 -1.27 0.77 -155.25 -0.12 -1.39 16 12 C -0.12 -1.23 6.08 -25.43 -0.15 -1.38 16 13 C 0.10 1.27 7.37 -2.86 -0.02 1.25 16 14 N -0.61 -10.61 2.94 -172.43 -0.51 -11.12 16 15 C 0.14 2.83 5.89 -4.04 -0.02 2.81 16 16 C 0.00 -0.01 4.61 -27.88 -0.13 -0.13 16 17 C -0.60 -17.17 9.11 -34.44 -0.31 -17.48 16 18 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 19 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 20 N -0.91 -28.03 13.65 55.43 0.76 -27.27 16 21 Si 1.07 25.27 29.90 -169.99 -5.08 20.19 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.53 9.20 6.63 -11.22 -0.07 9.13 16 26 O -0.52 -11.33 17.17 5.56 0.10 -11.24 16 27 C 0.06 0.67 4.41 -3.12 -0.01 0.66 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.41 3.41 8.19 -40.82 -0.33 3.08 16 32 H 0.07 0.57 6.05 -51.93 -0.31 0.26 16 33 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.06 0.61 6.35 -51.93 -0.33 0.28 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.66 6.78 -51.93 -0.35 0.31 16 38 H 0.06 0.50 5.53 -51.93 -0.29 0.21 16 39 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16 41 H 0.08 0.65 7.64 -51.93 -0.40 0.26 16 42 H 0.08 0.82 7.62 -51.93 -0.40 0.43 16 43 H 0.09 0.64 7.67 -51.93 -0.40 0.24 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.07 1.61 7.93 -51.92 -0.41 1.20 16 47 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 49 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 50 H 0.27 8.27 7.22 -40.82 -0.29 7.97 16 51 H 0.06 0.63 4.58 -51.92 -0.24 0.39 16 52 H 0.09 1.34 7.46 -51.93 -0.39 0.95 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -35.46 401.99 -8.76 -44.22 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.81 Total: 1.14 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -0.05 Total: -1.56 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -1.07 Total: -51.17 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.19 Total: -18.89 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.08 Total: 20.19 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.46 -8.76 -44.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273839460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.021 kcal (2) G-P(sol) polarization free energy of solvation -35.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds