Wall clock time and date at job start Tue Mar 31 2020 19:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 120.00104 * 2 1 4 4 O 1.21283 * 119.99838 * 16.54516 * 3 2 1 5 5 C 1.50696 * 120.00103 * 196.54855 * 3 2 1 6 6 C 1.52999 * 109.47011 * 209.21929 * 5 3 2 7 7 C 1.53001 * 109.47236 * 89.21938 * 5 3 2 8 8 N 1.46902 * 109.47173 * 329.21688 * 5 3 2 9 9 C 1.48721 * 111.00253 * 202.80272 * 8 5 3 10 10 C 1.55002 * 103.35342 * 158.81970 * 9 8 5 11 11 C 1.54797 * 102.94424 * 323.04369 * 10 9 8 12 12 C 1.47084 * 111.00030 * 319.95587 * 8 5 3 13 13 C 1.53877 * 110.68075 * 336.03715 * 12 8 5 14 14 C 1.54798 * 101.51595 * 96.04108 * 13 12 8 15 15 N 1.46855 * 105.42715 * 25.05407 * 14 13 12 16 16 C 1.46498 * 124.36465 * 163.06146 * 15 14 13 17 17 C 1.52999 * 109.46783 * 262.34739 * 16 15 14 18 18 C 1.50706 * 109.47187 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99607 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00143 * 180.27854 * 18 17 16 21 21 N 1.31515 * 119.99691 * 359.71950 * 20 18 17 22 22 Si 1.86803 * 120.00019 * 179.72273 * 20 18 17 23 23 H 1.48498 * 109.46989 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46705 * 119.99797 * 22 20 18 25 25 H 1.48498 * 109.47133 * 240.00043 * 22 20 18 26 26 C 1.34671 * 111.26357 * 342.79300 * 15 14 13 27 27 O 1.21279 * 125.07630 * 181.10384 * 26 15 14 28 28 H 1.08993 * 109.47316 * 60.08842 * 1 2 3 29 29 H 1.09000 * 109.46833 * 180.09542 * 1 2 3 30 30 H 1.09007 * 109.46956 * 300.08679 * 1 2 3 31 31 H 0.97001 * 120.00256 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47362 * 202.04820 * 6 5 3 33 33 H 1.09002 * 109.47311 * 322.04791 * 6 5 3 34 34 H 1.09007 * 109.47260 * 82.04722 * 6 5 3 35 35 H 1.09008 * 109.46803 * 294.99701 * 7 5 3 36 36 H 1.08990 * 109.47167 * 54.99775 * 7 5 3 37 37 H 1.09002 * 109.47087 * 175.00375 * 7 5 3 38 38 H 1.08998 * 110.64559 * 40.34894 * 9 8 5 39 39 H 1.08998 * 110.78265 * 277.35137 * 9 8 5 40 40 H 1.09004 * 110.71833 * 204.68261 * 10 9 8 41 41 H 1.08997 * 110.72340 * 81.41241 * 10 9 8 42 42 H 1.09007 * 110.36902 * 263.05828 * 11 10 9 43 43 H 1.09003 * 110.46590 * 140.77051 * 11 10 9 44 44 H 1.08999 * 110.99753 * 214.30141 * 13 12 8 45 45 H 1.08996 * 111.00118 * 338.15091 * 13 12 8 46 46 H 1.09001 * 110.37077 * 266.02531 * 14 13 12 47 47 H 1.08996 * 110.18323 * 143.98862 * 14 13 12 48 48 H 1.08998 * 109.47132 * 142.35023 * 16 15 14 49 49 H 1.08998 * 109.47515 * 22.34680 * 16 15 14 50 50 H 1.08998 * 109.47545 * 60.00436 * 17 16 15 51 51 H 1.08999 * 109.47514 * 299.99984 * 17 16 15 52 52 H 0.97002 * 119.99853 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5701 2.1958 0.2991 5 6 3.5991 1.1943 -0.3717 6 6 4.2895 2.3490 0.3568 7 6 3.7371 1.3894 -1.8829 8 7 4.2270 -0.0755 0.0175 9 6 5.6958 0.0860 0.1863 10 6 6.0860 -1.1113 1.0901 11 6 4.8809 -1.2245 2.0551 12 6 3.7262 -0.5329 1.3226 13 6 3.1956 0.6530 2.1471 14 6 1.6804 0.5925 1.8358 15 7 1.4116 -0.8050 1.4732 16 6 0.0777 -1.4099 1.4443 17 6 -0.1655 -2.1708 2.7491 18 6 -1.5375 -2.7937 2.7192 19 1 -2.1726 -2.6598 1.8560 20 6 -1.9844 -3.5292 3.7964 21 7 -1.2111 -3.6919 4.8477 22 14 -3.6880 -4.2948 3.7625 23 1 -4.3524 -3.9670 2.4756 24 1 -3.5709 -5.7690 3.8972 25 1 -4.4946 -3.7574 4.8876 26 6 2.5490 -1.4570 1.1650 27 8 2.6145 -2.6156 0.8127 28 1 -0.3633 0.5124 -0.8907 29 1 -0.3633 -1.0277 0.0017 30 1 -0.3633 0.5152 0.8893 31 1 1.9500 -0.8400 0.0004 32 1 5.2007 2.6216 -0.1756 33 1 3.6194 3.2080 0.3934 34 1 4.5402 2.0403 1.3717 35 1 3.3238 0.5235 -2.4003 36 1 3.1952 2.2856 -2.1846 37 1 4.7907 1.4978 -2.1405 38 1 5.9243 1.0306 0.6799 39 1 6.2048 0.0234 -0.7754 40 1 7.0020 -0.8965 1.6406 41 1 6.1941 -2.0211 0.4996 42 1 5.0964 -0.7123 2.9929 43 1 4.6393 -2.2709 2.2419 44 1 3.3857 0.5057 3.2102 45 1 3.6259 1.5928 1.8013 46 1 1.4377 1.2517 1.0023 47 1 1.1039 0.8707 2.7179 48 1 0.0098 -2.0999 0.6032 49 1 -0.6736 -0.6279 1.3342 50 1 -0.0977 -1.4809 3.5902 51 1 0.5858 -2.9529 2.8592 52 1 -1.5256 -4.2090 5.6058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273839516.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:45 Heat of formation + Delta-G solvation = 483.456688 kcal Electronic energy + Delta-G solvation = -34433.189708 eV Core-core repulsion = 30456.221845 eV Total energy + Delta-G solvation = -3976.967863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -46.38683 -40.08878 -40.04440 -36.65089 -34.83539 -34.19518 -33.38440 -32.06872 -29.82578 -29.50552 -28.82372 -27.90048 -27.21176 -24.94101 -23.77911 -22.92730 -21.95064 -21.23743 -20.71838 -19.64596 -18.96485 -17.95102 -17.60220 -16.87788 -16.31209 -15.97397 -15.86883 -15.34987 -15.12346 -14.61277 -14.43800 -14.10786 -13.70547 -13.55162 -13.43701 -13.31384 -13.10031 -12.88281 -12.69138 -12.42683 -12.28380 -12.19300 -12.01141 -11.81552 -11.70374 -11.63512 -11.30603 -11.17979 -11.00132 -10.86620 -10.60750 -10.52465 -10.37443 -10.30870 -10.07147 -9.69727 -9.40131 -9.28450 -8.92447 -8.60275 -8.41370 -7.90792 -6.38742 -6.05365 -4.11965 2.06027 2.66700 3.16800 3.27304 3.33836 3.36114 3.38578 3.79176 4.25160 4.31697 4.38696 4.41308 4.62888 4.68038 4.80432 4.88630 4.96335 5.11622 5.22972 5.28195 5.29156 5.30315 5.38186 5.43837 5.45897 5.52101 5.55474 5.58930 5.66090 5.75802 5.80050 5.85424 5.93137 5.95592 5.97008 5.99950 6.04698 6.12214 6.16901 6.24910 6.54956 6.59432 6.62949 6.67865 6.83125 7.25113 7.28111 7.57090 7.69388 7.86956 7.90426 8.24149 8.41204 8.94819 9.52799 11.04215 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.004115 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.522505 B = 6802.433464 C = 7532.769656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.638 5.638 3 C 0.477 3.523 4 O -0.536 6.536 5 C 0.086 3.914 6 C -0.198 4.198 7 C -0.126 4.126 8 N -0.489 5.489 9 C 0.031 3.969 10 C -0.121 4.121 11 C -0.111 4.111 12 C 0.059 3.941 13 C -0.210 4.210 14 C -0.168 4.168 15 N -0.558 5.558 16 C 0.068 3.932 17 C 0.004 3.996 18 C -0.524 4.524 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.891 5.891 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.478 3.522 27 O -0.515 6.515 28 H 0.049 0.951 29 H 0.141 0.859 30 H 0.093 0.907 31 H 0.428 0.572 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.142 0.858 46 H 0.290 0.710 47 H 0.051 0.949 48 H 0.079 0.921 49 H 0.121 0.879 50 H 0.016 0.984 51 H 0.018 0.982 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.404 13.040 -11.749 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.303 5.303 3 C 0.269 3.731 4 O -0.429 6.429 5 C -0.007 4.007 6 C -0.255 4.255 7 C -0.184 4.184 8 N -0.215 5.215 9 C -0.096 4.096 10 C -0.159 4.159 11 C -0.149 4.149 12 C -0.034 4.034 13 C -0.248 4.248 14 C -0.281 4.281 15 N -0.294 5.294 16 C -0.049 4.049 17 C -0.034 4.034 18 C -0.562 4.562 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.530 5.530 22 Si 0.723 3.277 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 C 0.267 3.733 27 O -0.392 6.392 28 H 0.068 0.932 29 H 0.158 0.842 30 H 0.111 0.889 31 H 0.291 0.709 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.159 0.841 46 H 0.294 0.706 47 H 0.069 0.931 48 H 0.097 0.903 49 H 0.139 0.861 50 H 0.035 0.965 51 H 0.037 0.963 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.835 12.369 -12.044 22.124 hybrid contribution -0.561 -0.799 1.781 2.031 sum 13.274 11.570 -10.262 20.381 Atomic orbital electron populations 1.24513 0.78572 1.07817 1.01847 1.51878 1.09724 1.09965 1.58717 1.18732 0.90674 0.83720 0.79960 1.89920 1.68635 1.30946 1.53412 1.21383 0.91253 0.89792 0.98274 1.23074 1.01982 0.99656 1.00799 1.21722 1.02810 1.02724 0.91171 1.64801 1.05131 1.25978 1.25544 1.23483 0.86924 0.98518 1.00707 1.22544 0.97332 0.98850 0.97159 1.22281 0.92579 1.02236 0.97818 1.22023 0.95319 0.95691 0.90350 1.24521 0.97519 1.01465 1.01263 1.30806 0.95268 0.86370 1.15672 1.51147 1.07512 1.12844 1.57942 1.23655 0.82032 0.98047 1.01212 1.19583 0.97331 0.95267 0.91210 1.21088 1.00089 1.32634 1.02436 0.92269 1.25022 0.97611 0.96200 0.95431 1.69993 1.36489 1.40341 1.06156 0.86481 0.84068 0.79050 0.78070 1.19555 1.20964 1.20980 1.19950 0.84793 0.87304 0.81253 1.90786 1.85044 1.14842 1.48553 0.93220 0.84221 0.88945 0.70933 0.91040 0.89196 0.88885 0.91362 0.91117 0.91307 0.91758 0.89247 0.90585 0.90247 0.90570 0.89713 0.90534 0.84143 0.70593 0.93065 0.90311 0.86137 0.96543 0.96316 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 7.25 51.24 0.37 0.55 16 2 N -0.64 -9.55 2.83 -287.87 -0.82 -10.37 16 3 C 0.48 6.58 3.08 -27.46 -0.08 6.50 16 4 O -0.54 -8.13 13.81 5.55 0.08 -8.05 16 5 C 0.09 0.94 0.67 -132.75 -0.09 0.85 16 6 C -0.20 -1.78 6.13 37.16 0.23 -1.55 16 7 C -0.13 -1.14 8.57 37.16 0.32 -0.82 16 8 N -0.49 -5.87 4.58 -202.67 -0.93 -6.80 16 9 C 0.03 0.28 5.90 -1.76 -0.01 0.27 16 10 C -0.12 -1.20 7.07 -24.73 -0.17 -1.37 16 11 C -0.11 -1.47 6.19 -25.66 -0.16 -1.63 16 12 C 0.06 0.87 0.77 -132.17 -0.10 0.77 16 13 C -0.21 -3.03 5.31 -25.33 -0.13 -3.16 16 14 C -0.17 -2.82 4.32 -52.68 -0.23 -3.05 16 15 N -0.56 -10.29 1.29 -347.18 -0.45 -10.73 16 16 C 0.07 1.37 2.90 -12.65 -0.04 1.33 16 17 C 0.00 0.10 5.29 -27.88 -0.15 -0.04 16 18 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 22 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.48 9.07 4.21 -11.14 -0.05 9.02 16 27 O -0.52 -11.54 17.20 5.56 0.10 -11.45 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.14 2.02 3.80 -109.91 -0.42 1.61 16 30 H 0.09 1.38 5.03 -51.93 -0.26 1.12 16 31 H 0.43 7.11 3.12 -330.33 -1.03 6.08 16 32 H 0.07 0.47 7.28 -51.93 -0.38 0.10 16 33 H 0.09 0.87 7.05 -51.93 -0.37 0.51 16 34 H 0.09 0.85 4.13 -51.92 -0.21 0.64 16 35 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.49 7.97 -51.93 -0.41 0.07 16 38 H 0.06 0.49 5.22 -51.93 -0.27 0.21 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.90 7.38 -51.92 -0.38 0.52 16 43 H 0.08 1.34 7.43 -51.93 -0.39 0.96 16 44 H 0.08 1.13 7.55 -51.93 -0.39 0.74 16 45 H 0.14 1.70 2.25 -57.59 -0.13 1.58 16 46 H 0.29 4.50 0.26 -248.21 -0.06 4.43 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.08 1.55 6.63 -51.93 -0.34 1.21 16 49 H 0.12 2.12 4.17 -95.30 -0.40 1.72 16 50 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 52 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 354.66 15.07 5.34 5.34 Total: -1.00 -33.93 354.66 -10.46 -44.39 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -8.79 Total: 13.25 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -0.71 Total: -5.62 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -1.45 Total: -54.42 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: 0.17 Total: -19.49 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.93 -10.46 -44.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273839516.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 527.847 kcal (2) G-P(sol) polarization free energy of solvation -33.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 493.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 483.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds