Wall clock time and date at job start Tue Mar 31 2020 19:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 120.00384 * 2 1 4 4 O 1.21281 * 119.99933 * 29.80895 * 3 2 1 5 5 C 1.50696 * 120.00214 * 209.81342 * 3 2 1 6 6 C 1.52998 * 109.47191 * 231.01256 * 5 3 2 7 7 C 1.53006 * 109.47091 * 111.01192 * 5 3 2 8 8 N 1.46899 * 109.46963 * 351.01149 * 5 3 2 9 9 C 1.48721 * 111.00010 * 53.27746 * 8 5 3 10 10 C 1.55009 * 103.35137 * 201.17955 * 9 8 5 11 11 C 1.54804 * 102.94128 * 36.96061 * 10 9 8 12 12 C 1.47072 * 111.00094 * 296.11619 * 8 5 3 13 13 C 1.53874 * 110.68673 * 23.95100 * 12 8 5 14 14 C 1.54642 * 101.58381 * 263.76200 * 13 12 8 15 15 N 1.46847 * 105.50583 * 335.25004 * 14 13 12 16 16 C 1.46495 * 124.36638 * 196.85082 * 15 14 13 17 17 C 1.53006 * 109.47043 * 89.97510 * 16 15 14 18 18 C 1.50711 * 109.47053 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99600 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99932 * 179.97438 * 18 17 16 21 21 N 1.31523 * 120.00161 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00109 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47458 * 59.99585 * 22 20 18 24 24 H 1.48503 * 109.47526 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46974 * 299.99767 * 22 20 18 26 26 C 1.34671 * 111.26519 * 16.86858 * 15 14 13 27 27 O 1.21277 * 125.07950 * 179.16897 * 26 15 14 28 28 H 1.09000 * 109.46813 * 300.00416 * 1 2 3 29 29 H 1.09003 * 109.46728 * 59.99834 * 1 2 3 30 30 H 1.08993 * 109.47460 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99963 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47300 * 218.52410 * 6 5 3 33 33 H 1.09003 * 109.47237 * 338.51784 * 6 5 3 34 34 H 1.09001 * 109.47283 * 98.52351 * 6 5 3 35 35 H 1.09000 * 109.47050 * 295.02884 * 7 5 3 36 36 H 1.08999 * 109.46807 * 55.03600 * 7 5 3 37 37 H 1.09001 * 109.46527 * 175.02974 * 7 5 3 38 38 H 1.09002 * 110.64774 * 319.64330 * 9 8 5 39 39 H 1.09001 * 110.64740 * 82.71419 * 9 8 5 40 40 H 1.09000 * 110.72143 * 278.59909 * 10 9 8 41 41 H 1.08997 * 110.72342 * 155.32246 * 10 9 8 42 42 H 1.09001 * 110.37343 * 219.26586 * 11 10 9 43 43 H 1.08998 * 110.36898 * 96.93001 * 11 10 9 44 44 H 1.09001 * 111.00018 * 21.84112 * 13 12 8 45 45 H 1.08999 * 111.00474 * 145.68865 * 13 12 8 46 46 H 1.09006 * 110.23759 * 94.25774 * 14 13 12 47 47 H 1.09001 * 110.24107 * 216.23549 * 14 13 12 48 48 H 1.09001 * 109.47461 * 209.96662 * 16 15 14 49 49 H 1.09001 * 109.47748 * 329.97338 * 16 15 14 50 50 H 1.08996 * 109.47092 * 299.99494 * 17 16 15 51 51 H 1.08996 * 109.47422 * 59.99923 * 17 16 15 52 52 H 0.96999 * 119.99867 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.6530 2.1480 0.5221 5 6 3.4963 1.2535 -0.6488 6 6 4.4905 1.8815 0.3300 7 6 3.4056 2.1177 -1.9082 8 7 3.9521 -0.0950 -1.0120 9 6 2.9321 -0.7989 -1.8341 10 6 3.2963 -2.2946 -1.6528 11 6 3.7458 -2.3651 -0.1732 12 6 4.1398 -0.9281 0.1853 13 6 3.2810 -0.4065 1.3507 14 6 4.2998 0.4650 2.1213 15 7 5.6200 -0.0799 1.7801 16 6 6.8464 0.1906 2.5343 17 6 7.0141 -0.8638 3.6303 18 6 8.2762 -0.5859 4.4058 19 1 8.8967 0.2581 4.1429 20 6 8.6385 -1.4091 5.4508 21 7 7.8825 -2.4365 5.7712 22 14 10.2023 -1.0643 6.4125 23 1 10.1165 0.2834 7.0305 24 1 10.3645 -2.0870 7.4770 25 1 11.3688 -1.1147 5.4951 26 6 5.5580 -0.8600 0.6841 27 8 6.5036 -1.4237 0.1754 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.9500 -0.8401 0.0004 32 1 5.1652 2.5440 -0.2123 33 1 3.9475 2.4530 1.0828 34 1 5.0672 1.0950 0.8169 35 1 2.7660 1.6258 -2.6411 36 1 2.9842 3.0897 -1.6522 37 1 4.4022 2.2530 -2.3285 38 1 1.9293 -0.5991 -1.4564 39 1 3.0146 -0.5075 -2.8812 40 1 4.1129 -2.5761 -2.3177 41 1 2.4247 -2.9270 -1.8216 42 1 4.6024 -3.0309 -0.0681 43 1 2.9231 -2.7015 0.4577 44 1 2.4497 0.1959 0.9842 45 1 2.9225 -1.2285 1.9703 46 1 4.2262 1.5041 1.8002 47 1 4.1260 0.3882 3.1947 48 1 7.7027 0.1539 1.8609 49 1 6.7833 1.1796 2.9882 50 1 6.1579 -0.8272 4.3038 51 1 7.0774 -1.8528 3.1765 52 1 8.1373 -3.0154 6.5067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273839517.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:48 Heat of formation + Delta-G solvation = 172.508136 kcal Electronic energy + Delta-G solvation = -33294.762874 eV Core-core repulsion = 29304.311270 eV Total energy + Delta-G solvation = -3990.451604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.20538 -40.09887 -38.06087 -36.62950 -35.65071 -34.44709 -33.72315 -31.99746 -29.90220 -29.36100 -28.49379 -28.08103 -26.76359 -25.06814 -23.51390 -23.19459 -21.99154 -21.49217 -20.92720 -19.72564 -18.96000 -18.12865 -17.27559 -16.82040 -16.45953 -15.99251 -15.53234 -15.29573 -15.06245 -14.62999 -14.42646 -14.37074 -14.01621 -13.63905 -13.27846 -13.24332 -13.01348 -12.79206 -12.72490 -12.70576 -12.55240 -12.48992 -12.28835 -12.09381 -11.93515 -11.57876 -11.39176 -11.34148 -11.26059 -11.08494 -10.92107 -10.74099 -10.72895 -10.42199 -10.01405 -9.93829 -9.52926 -9.45679 -9.20813 -9.08536 -8.37616 -8.16336 -7.96222 -6.02781 -4.06430 1.88979 2.61143 2.83051 3.30607 3.33301 3.37419 3.41346 3.80828 4.05076 4.23866 4.30221 4.43053 4.45462 4.56984 4.68652 4.80862 4.86812 4.87925 4.96694 5.05017 5.07663 5.29191 5.31041 5.33447 5.40053 5.43030 5.49298 5.51116 5.54322 5.59112 5.67322 5.71220 5.85162 5.86328 5.90914 5.98116 6.00109 6.07335 6.09552 6.29737 6.45356 6.50631 6.58788 6.78937 6.88267 6.96541 7.43677 7.53442 7.64555 7.80876 7.96218 8.32213 8.60777 8.99808 9.57700 11.08588 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.003423 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.553254 B = 8179.048764 C = 8439.803955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.763 5.763 3 C 0.526 3.474 4 O -0.511 6.511 5 C 0.082 3.918 6 C -0.225 4.225 7 C -0.128 4.128 8 N -0.474 5.474 9 C -0.033 4.033 10 C -0.122 4.122 11 C -0.122 4.122 12 C 0.055 3.945 13 C -0.281 4.281 14 C 0.024 3.976 15 N -0.600 5.600 16 C 0.123 3.877 17 C 0.012 3.988 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.893 5.893 22 Si 0.896 3.104 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.539 3.461 27 O -0.511 6.511 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.425 0.575 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.145 0.855 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.180 0.820 45 H 0.091 0.909 46 H 0.141 0.859 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.017 0.983 51 H 0.020 0.980 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.088 4.791 -16.196 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.433 5.433 3 C 0.318 3.682 4 O -0.384 6.384 5 C -0.012 4.012 6 C -0.281 4.281 7 C -0.186 4.186 8 N -0.199 5.199 9 C -0.161 4.161 10 C -0.160 4.160 11 C -0.161 4.161 12 C -0.038 4.038 13 C -0.320 4.320 14 C -0.096 4.096 15 N -0.334 5.334 16 C 0.004 3.996 17 C -0.025 4.025 18 C -0.562 4.562 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.723 3.277 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.201 1.201 26 C 0.325 3.675 27 O -0.384 6.384 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.273 0.727 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.161 0.839 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.193 0.807 45 H 0.110 0.890 46 H 0.157 0.843 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.088 0.912 50 H 0.035 0.965 51 H 0.039 0.961 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.387 5.159 -16.289 24.378 hybrid contribution 0.338 -0.607 1.283 1.460 sum -17.049 4.552 -15.006 23.164 Atomic orbital electron populations 1.21731 0.80227 1.03076 1.02705 1.48308 1.08313 1.09793 1.76861 1.20939 0.88612 0.81909 0.76751 1.90761 1.69921 1.36883 1.40821 1.21734 0.90349 0.91613 0.97513 1.24292 0.99832 1.05330 0.98658 1.21809 1.03866 0.98594 0.94317 1.64698 1.41638 0.99863 1.13702 1.24713 0.97502 0.94017 0.99830 1.22559 1.01844 0.95261 0.96331 1.22437 1.02760 0.94126 0.96754 1.22048 0.95900 0.95127 0.90714 1.26275 1.03014 1.04341 0.98418 1.24268 0.81267 1.03069 1.01045 1.48798 1.09846 1.46974 1.27781 1.21896 0.82877 1.00469 0.94406 1.19396 0.97122 0.93900 0.92127 1.21049 1.07619 1.12431 1.15067 0.92444 1.24996 0.97037 0.94960 0.97219 1.69967 1.38054 1.15979 1.29214 0.86604 0.83596 0.77930 0.79559 1.20166 1.21269 1.20106 1.19922 0.89247 0.78112 0.80233 1.90688 1.41320 1.45617 1.60784 0.91406 0.92220 0.90153 0.72673 0.91414 0.89707 0.83894 0.92150 0.90925 0.90033 0.88167 0.89265 0.89886 0.90452 0.88854 0.90494 0.80668 0.89037 0.84282 0.90967 0.90791 0.91245 0.96463 0.96144 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 10.75 59.85 0.64 1.07 16 2 N -0.76 -6.81 1.86 -115.83 -0.22 -7.03 16 3 C 0.53 6.00 3.41 -10.99 -0.04 5.96 16 4 O -0.51 -7.07 16.47 5.56 0.09 -6.98 16 5 C 0.08 0.94 0.63 -132.75 -0.08 0.86 16 6 C -0.22 -2.91 6.94 37.16 0.26 -2.66 16 7 C -0.13 -1.22 8.36 37.16 0.31 -0.91 16 8 N -0.47 -5.76 4.81 -202.66 -0.97 -6.74 16 9 C -0.03 -0.30 5.00 -1.75 -0.01 -0.31 16 10 C -0.12 -1.10 6.99 -24.72 -0.17 -1.27 16 11 C -0.12 -1.44 5.60 -25.65 -0.14 -1.59 16 12 C 0.06 0.77 0.66 -132.18 -0.09 0.68 16 13 C -0.28 -3.64 4.07 -25.41 -0.10 -3.74 16 14 C 0.02 0.37 6.10 -2.99 -0.02 0.35 16 15 N -0.60 -11.12 1.79 -204.45 -0.37 -11.49 16 16 C 0.12 2.64 5.88 -4.04 -0.02 2.61 16 17 C 0.01 0.33 5.30 -27.87 -0.15 0.18 16 18 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 19 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -27.15 13.29 55.43 0.74 -26.42 16 22 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.54 10.23 6.17 -11.14 -0.07 10.16 16 27 O -0.51 -11.65 17.13 5.56 0.10 -11.55 16 28 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.42 3.70 2.71 -40.82 -0.11 3.59 16 32 H 0.07 0.82 7.64 -51.93 -0.40 0.43 16 33 H 0.09 1.07 5.51 -51.93 -0.29 0.79 16 34 H 0.14 2.18 1.37 -128.51 -0.18 2.00 16 35 H 0.06 0.49 6.94 -51.93 -0.36 0.13 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.77 8.02 -51.93 -0.42 0.35 16 38 H 0.10 0.78 3.77 -84.31 -0.32 0.46 16 39 H 0.09 0.72 7.63 -51.93 -0.40 0.33 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 1.33 7.43 -51.93 -0.39 0.95 16 43 H 0.08 0.73 7.12 -51.93 -0.37 0.36 16 44 H 0.18 2.07 1.12 -202.03 -0.23 1.84 16 45 H 0.09 1.14 7.55 -51.93 -0.39 0.75 16 46 H 0.14 1.94 2.63 -112.94 -0.30 1.64 16 47 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.07 1.65 7.93 -51.93 -0.41 1.24 16 49 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 50 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -34.80 371.40 -8.46 -43.26 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -8.31 Total: 6.74 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.09 Total: -2.20 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.82 Total: -51.68 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.19 Total: -18.53 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.80 -8.46 -43.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273839517.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.768 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds