Wall clock time and date at job start Tue Mar 31 2020 19:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34780 * 119.99811 * 2 1 4 4 O 1.21278 * 120.00175 * 4.75634 * 3 2 1 5 5 C 1.50705 * 119.99808 * 184.76485 * 3 2 1 6 6 C 1.53001 * 109.46971 * 204.59532 * 5 3 2 7 7 C 1.52996 * 109.47253 * 84.59547 * 5 3 2 8 8 N 1.46500 * 109.47046 * 324.59441 * 5 3 2 9 9 C 1.46910 * 124.35130 * 123.25299 * 8 5 3 10 10 C 1.53853 * 105.34984 * 163.54754 * 9 8 5 11 11 C 1.53968 * 102.45212 * 24.71551 * 10 9 8 12 12 C 1.34502 * 124.34930 * 303.22720 * 8 5 3 13 13 O 1.21277 * 124.94728 * 0.37901 * 12 8 5 14 14 C 1.52229 * 110.57670 * 142.55611 * 10 9 8 15 15 C 1.53236 * 109.42941 * 180.70283 * 14 10 9 16 16 C 1.53121 * 109.07422 * 303.59918 * 15 14 10 17 17 C 1.53047 * 109.34259 * 58.32167 * 16 15 14 18 18 N 1.45963 * 110.73968 * 266.62627 * 10 9 8 19 19 C 1.46897 * 111.00289 * 52.67130 * 18 10 9 20 20 C 1.50695 * 109.47255 * 176.47835 * 19 18 10 21 21 H 1.08003 * 120.00391 * 5.52079 * 20 19 18 22 22 C 1.37885 * 119.99938 * 185.51350 * 20 19 18 23 23 N 1.31506 * 119.99911 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99669 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46901 * 90.00446 * 24 22 20 26 26 H 1.48503 * 109.46921 * 209.99964 * 24 22 20 27 27 H 1.48497 * 109.47375 * 329.99997 * 24 22 20 28 28 H 1.08996 * 109.47661 * 60.00086 * 1 2 3 29 29 H 1.09001 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46991 * 299.99417 * 1 2 3 31 31 H 0.96999 * 120.00635 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47179 * 179.97438 * 6 5 3 33 33 H 1.09001 * 109.46708 * 299.99752 * 6 5 3 34 34 H 1.09001 * 109.47132 * 59.99657 * 6 5 3 35 35 H 1.09004 * 109.47048 * 299.99479 * 7 5 3 36 36 H 1.09001 * 109.47477 * 59.99604 * 7 5 3 37 37 H 1.09006 * 109.47088 * 180.02562 * 7 5 3 38 38 H 1.08991 * 110.27057 * 44.58036 * 9 8 5 39 39 H 1.09003 * 110.34678 * 282.55415 * 9 8 5 40 40 H 1.09005 * 110.50429 * 94.51936 * 11 10 9 41 41 H 1.08996 * 110.50896 * 217.21960 * 11 10 9 42 42 H 1.09005 * 109.47795 * 300.69295 * 14 10 9 43 43 H 1.09004 * 109.47968 * 60.71673 * 14 10 9 44 44 H 1.09003 * 109.53619 * 63.48018 * 15 14 10 45 45 H 1.09000 * 109.53726 * 183.63656 * 15 14 10 46 46 H 1.08994 * 109.49689 * 178.28857 * 16 15 14 47 47 H 1.09005 * 109.48969 * 298.36778 * 16 15 14 48 48 H 1.09000 * 109.47007 * 180.16388 * 17 16 15 49 49 H 1.08998 * 109.47354 * 60.16204 * 17 16 15 50 50 H 1.09004 * 109.46984 * 296.47738 * 19 18 10 51 51 H 1.09001 * 109.47119 * 56.47721 * 19 18 10 52 52 H 0.97000 * 119.99700 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5355 2.2157 0.0871 5 6 3.6419 1.1695 -0.1084 6 6 4.1957 2.4558 0.5077 7 6 4.0471 1.0942 -1.5818 8 7 4.1849 0.0122 0.6072 9 6 5.0482 -1.0087 -0.0018 10 6 5.6941 -1.7532 1.1795 11 6 4.6801 -1.5187 2.3142 12 6 3.9574 -0.2520 1.9062 13 8 3.2735 0.4258 2.6436 14 6 5.8183 -3.2389 0.8721 15 6 6.4476 -3.9566 2.0709 16 6 7.7967 -3.3070 2.3912 17 6 7.5857 -1.8203 2.6876 18 7 6.9883 -1.1670 1.5145 19 6 6.8718 0.2827 1.7217 20 6 8.2060 0.8378 2.1491 21 1 9.0756 0.1976 2.1702 22 6 8.3167 2.1631 2.5131 23 7 7.2578 2.9425 2.4878 24 14 9.9707 2.8513 3.0422 25 1 10.6919 3.3750 1.8543 26 1 9.7601 3.9509 4.0178 27 1 10.7751 1.7754 3.6751 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.9500 -0.8400 -0.0004 32 1 5.2829 2.4573 0.4297 33 1 3.7917 3.3169 -0.0248 34 1 3.9070 2.5095 1.5574 35 1 3.6526 0.1777 -2.0207 36 1 3.6431 1.9552 -2.1143 37 1 5.1344 1.0953 -1.6602 38 1 5.8153 -0.5371 -0.6158 39 1 4.4546 -1.6974 -0.6030 40 1 3.9814 -2.3527 2.3802 41 1 5.1959 -1.3752 3.2636 42 1 4.8291 -3.6539 0.6783 43 1 6.4489 -3.3770 -0.0062 44 1 5.7877 -3.8714 2.9343 45 1 6.5967 -5.0088 1.8286 46 1 8.2366 -3.7926 3.2622 47 1 8.4649 -3.4163 1.5370 48 1 8.5453 -1.3551 2.9131 49 1 6.9191 -1.7114 3.5430 50 1 6.5613 0.7588 0.7916 51 1 6.1309 0.4806 2.4963 52 1 7.3356 3.8748 2.7442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032046.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:17 Heat of formation + Delta-G solvation = -80.795171 kcal Electronic energy + Delta-G solvation = -33286.583907 eV Core-core repulsion = 29285.148247 eV Total energy + Delta-G solvation = -4001.435660 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.64249 -40.87759 -39.23527 -37.35262 -35.73636 -35.48581 -35.00521 -33.53383 -31.54325 -29.51433 -28.90770 -28.40949 -28.23800 -26.63644 -25.46772 -23.72662 -23.10772 -22.36755 -21.72919 -20.38449 -19.58036 -18.77341 -18.35548 -17.45844 -17.06501 -16.98744 -16.67620 -16.19213 -15.96903 -15.72832 -15.54578 -15.42165 -15.06106 -14.89463 -14.63050 -14.28614 -14.13901 -13.98656 -13.69802 -13.60050 -13.49875 -13.41830 -13.27197 -13.18443 -12.96848 -12.92015 -12.84886 -12.70540 -12.55311 -12.44941 -12.34360 -12.14462 -11.91092 -11.52846 -11.31363 -11.18515 -10.96984 -10.88592 -10.68977 -10.55094 -10.21346 -9.66725 -8.89959 -8.14608 -6.23792 1.34285 1.37914 1.38859 1.48468 1.53548 2.05882 2.19816 2.39773 3.17027 3.18545 3.41106 3.57399 3.65269 3.82573 3.93526 3.95676 4.04176 4.22779 4.39080 4.39862 4.45699 4.52727 4.55652 4.56900 4.60976 4.63621 4.69285 4.73575 4.81159 4.83158 4.86615 4.95114 5.05891 5.10912 5.15001 5.19308 5.23847 5.28545 5.36665 5.38779 5.41324 5.43325 5.56716 5.59190 5.68490 5.72028 6.10656 6.11836 6.35997 6.41083 6.79023 6.95175 7.09656 7.19641 7.45169 8.93069 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.005645 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.024483 B = 4959.096043 C = 6827.575420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.716 5.716 3 C 0.519 3.481 4 O -0.579 6.579 5 C 0.171 3.829 6 C -0.126 4.126 7 C -0.140 4.140 8 N -0.603 5.603 9 C 0.107 3.893 10 C 0.104 3.896 11 C -0.175 4.175 12 C 0.516 3.484 13 O -0.582 6.582 14 C -0.089 4.089 15 C -0.116 4.116 16 C -0.110 4.110 17 C 0.061 3.939 18 N -0.519 5.519 19 C 0.216 3.784 20 C -0.530 4.530 21 H 0.063 0.937 22 C 0.009 3.991 23 N -0.917 5.917 24 Si 0.954 3.046 25 H -0.273 1.273 26 H -0.294 1.294 27 H -0.265 1.265 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.033 0.967 31 H 0.412 0.588 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.020 0.980 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.128 0.872 40 H 0.136 0.864 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.091 0.909 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.057 0.943 49 H 0.005 0.995 50 H 0.019 0.981 51 H -0.043 1.043 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.895 -18.440 -10.324 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.367 5.367 3 C 0.305 3.695 4 O -0.457 6.457 5 C 0.083 3.917 6 C -0.185 4.185 7 C -0.197 4.197 8 N -0.338 5.338 9 C -0.014 4.014 10 C 0.012 3.988 11 C -0.217 4.217 12 C 0.306 3.694 13 O -0.462 6.462 14 C -0.127 4.127 15 C -0.154 4.154 16 C -0.148 4.148 17 C -0.067 4.067 18 N -0.242 5.242 19 C 0.090 3.910 20 C -0.568 4.568 21 H 0.082 0.918 22 C -0.190 4.190 23 N -0.557 5.557 24 Si 0.780 3.220 25 H -0.198 1.198 26 H -0.220 1.220 27 H -0.190 1.190 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.052 0.948 31 H 0.248 0.752 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.146 0.854 40 H 0.154 0.846 41 H 0.089 0.911 42 H 0.122 0.878 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.076 0.924 49 H 0.024 0.976 50 H 0.037 0.963 51 H -0.026 1.026 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.473 -17.199 -10.324 21.407 hybrid contribution 0.582 1.666 1.957 2.635 sum -6.890 -15.533 -8.367 18.941 Atomic orbital electron populations 1.21693 0.78358 1.04444 1.01228 1.45621 1.08500 1.08234 1.74349 1.20914 0.90102 0.84013 0.74508 1.90645 1.70692 1.33403 1.51002 1.20461 0.88601 0.86466 0.96161 1.21754 1.01216 0.96121 0.99372 1.22039 1.03768 1.05044 0.88863 1.48516 1.50439 1.24526 1.10302 1.22531 0.93654 0.89443 0.95818 1.21674 0.87237 0.97566 0.92299 1.23047 1.00515 0.96345 1.01772 1.21425 0.79186 0.87078 0.81736 1.90684 1.42826 1.55932 1.56711 1.21469 1.03251 0.88605 0.99378 1.21600 0.95573 1.00120 0.98062 1.21589 0.98788 0.92467 1.01923 1.22014 0.98621 0.95557 0.90497 1.61906 1.20865 1.04311 1.37139 1.19351 0.94347 0.83508 0.93824 1.21572 0.95954 0.95002 1.44284 0.91847 1.25753 0.99564 0.97706 0.96007 1.70118 1.30325 1.06105 1.49122 0.85619 0.80442 0.77902 0.78033 1.19844 1.21986 1.18978 0.91889 0.86513 0.94767 0.75183 0.91697 0.91671 0.96062 0.87947 0.90205 0.89978 0.89627 0.85391 0.84595 0.91073 0.87834 0.89372 0.92634 0.89074 0.91255 0.91072 0.92415 0.97640 0.96283 1.02564 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.77 10.71 127.77 1.37 3.14 16 2 N -0.72 -18.18 5.48 -484.52 -2.65 -20.83 16 3 C 0.52 18.18 5.72 87.66 0.50 18.68 16 4 O -0.58 -25.20 16.10 -3.02 -0.05 -25.25 16 5 C 0.17 5.79 1.03 2.86 0.00 5.79 16 6 C -0.13 -5.65 8.05 71.98 0.58 -5.07 16 7 C -0.14 -3.34 7.57 71.98 0.54 -2.79 16 8 N -0.60 -19.24 1.28 -775.58 -0.99 -20.23 16 9 C 0.11 2.53 4.53 86.59 0.39 2.92 16 10 C 0.10 2.74 0.71 4.06 0.00 2.74 16 11 C -0.18 -5.37 4.47 30.41 0.14 -5.23 16 12 C 0.52 19.97 5.27 87.93 0.46 20.43 16 13 O -0.58 -28.95 16.06 -3.02 -0.05 -28.99 16 14 C -0.09 -1.44 4.65 30.42 0.14 -1.30 16 15 C -0.12 -2.00 5.81 30.71 0.18 -1.82 16 16 C -0.11 -2.60 6.07 30.65 0.19 -2.42 16 17 C 0.06 2.14 4.92 86.31 0.42 2.57 16 18 N -0.52 -18.89 4.55 -851.07 -3.88 -22.76 16 19 C 0.22 10.53 3.56 85.56 0.30 10.83 16 20 C -0.53 -28.84 8.28 25.60 0.21 -28.63 16 21 H 0.06 3.37 6.36 -2.91 -0.02 3.36 16 22 C 0.01 0.50 5.46 84.66 0.46 0.97 16 23 N -0.92 -55.59 13.29 21.45 0.28 -55.31 16 24 Si 0.95 44.77 29.54 68.60 2.03 46.80 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.41 8.07 8.01 -92.71 -0.74 7.33 16 32 H 0.06 3.19 7.22 -2.39 -0.02 3.17 16 33 H 0.06 2.77 7.87 -2.39 -0.02 2.75 16 34 H 0.02 1.11 7.02 -2.39 -0.02 1.10 16 35 H 0.10 1.64 8.00 -2.39 -0.02 1.62 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 2.01 7.21 -2.38 -0.02 1.99 16 38 H 0.09 2.26 6.23 -2.39 -0.01 2.25 16 39 H 0.13 1.61 7.85 -2.39 -0.02 1.59 16 40 H 0.14 2.98 7.80 -2.38 -0.02 2.96 16 41 H 0.07 2.70 5.78 -2.39 -0.01 2.68 16 42 H 0.10 0.96 8.05 -2.38 -0.02 0.94 16 43 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.05 1.01 7.59 -2.39 -0.02 0.99 16 45 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 48 H 0.06 2.37 5.95 -2.39 -0.01 2.35 16 49 H 0.01 0.21 6.22 -2.39 -0.01 0.19 16 50 H 0.02 0.99 5.44 -2.39 -0.01 0.98 16 51 H -0.04 -2.49 5.80 -2.39 -0.01 -2.50 16 52 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -83.84 386.28 0.78 -83.06 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.19 Total: 22.70 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 5.90 Total: 20.82 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -7.24 Total: -119.14 kcal Atomic # 8 Polarization: -54.14 SS G_CDS: -0.10 Total: -54.24 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -83.84 0.78 -83.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032046.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.263 kcal (2) G-P(sol) polarization free energy of solvation -83.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds