Wall clock time and date at job start Tue Mar 31 2020 19:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34777 * 120.00018 * 2 1 4 4 O 1.21276 * 120.00338 * 4.94542 * 3 2 1 5 5 C 1.50699 * 120.00009 * 184.94925 * 3 2 1 6 6 C 1.53001 * 109.47187 * 164.78365 * 5 3 2 7 7 C 1.53002 * 109.47141 * 284.78542 * 5 3 2 8 8 N 1.46500 * 109.47322 * 44.78502 * 5 3 2 9 9 C 1.46920 * 124.35577 * 197.40359 * 8 5 3 10 10 C 1.53989 * 105.27190 * 163.44101 * 9 8 5 11 11 C 1.53998 * 102.36836 * 25.07443 * 10 9 8 12 12 C 1.34497 * 124.35215 * 17.69965 * 8 5 3 13 13 O 1.21283 * 124.94586 * 0.35497 * 12 8 5 14 14 C 1.52234 * 110.85498 * 267.21995 * 10 9 8 15 15 C 1.53242 * 109.41819 * 293.33278 * 14 10 9 16 16 C 1.53132 * 109.06188 * 303.57493 * 15 14 10 17 17 C 1.53037 * 109.34647 * 58.33998 * 16 15 14 18 18 N 1.45963 * 110.65479 * 143.01228 * 10 9 8 19 19 C 1.46901 * 111.00280 * 300.08482 * 18 10 9 20 20 C 1.50700 * 109.47206 * 184.29831 * 19 18 10 21 21 H 1.08001 * 120.00116 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99787 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00019 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00117 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46968 * 90.00007 * 24 22 20 26 26 H 1.48497 * 109.47678 * 210.00154 * 24 22 20 27 27 H 1.48500 * 109.47228 * 330.00460 * 24 22 20 28 28 H 1.08999 * 109.47362 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47604 * 300.00190 * 1 2 3 30 30 H 1.09001 * 109.47542 * 60.00080 * 1 2 3 31 31 H 0.97003 * 120.00116 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47054 * 179.97438 * 6 5 3 33 33 H 1.08994 * 109.47213 * 300.00094 * 6 5 3 34 34 H 1.09003 * 109.46616 * 60.00009 * 6 5 3 35 35 H 1.08995 * 109.46930 * 300.00164 * 7 5 3 36 36 H 1.08998 * 109.47139 * 60.00190 * 7 5 3 37 37 H 1.09004 * 109.47342 * 179.97438 * 7 5 3 38 38 H 1.09000 * 110.27133 * 282.54542 * 9 8 5 39 39 H 1.09004 * 110.26591 * 44.59859 * 9 8 5 40 40 H 1.09008 * 110.50483 * 217.00500 * 11 10 9 41 41 H 1.08996 * 110.62630 * 94.35327 * 11 10 9 42 42 H 1.08998 * 109.48196 * 53.32163 * 14 10 9 43 43 H 1.08995 * 109.48069 * 173.35264 * 14 10 9 44 44 H 1.09007 * 109.54007 * 183.70273 * 15 14 10 45 45 H 1.08997 * 109.61089 * 63.49631 * 15 14 10 46 46 H 1.08994 * 109.49666 * 298.36794 * 16 15 14 47 47 H 1.09011 * 109.51303 * 178.30840 * 16 15 14 48 48 H 1.08997 * 109.47050 * 180.16585 * 17 16 15 49 49 H 1.08999 * 109.47348 * 60.15920 * 17 16 15 50 50 H 1.09008 * 109.46757 * 304.29859 * 19 18 10 51 51 H 1.09003 * 109.46883 * 64.29557 * 19 18 10 52 52 H 0.97004 * 119.99944 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5359 2.2156 0.0905 5 6 3.6416 1.1696 -0.1126 6 6 4.1241 2.5774 -0.4679 7 6 4.2538 0.7425 1.2230 8 7 4.0543 0.2330 -1.1607 9 6 5.4156 -0.2999 -1.3073 10 6 5.2751 -1.5223 -2.2333 11 6 3.9943 -1.1929 -3.0223 12 6 3.2371 -0.2453 -2.1159 13 8 2.0644 0.0407 -2.2340 14 6 5.0891 -2.7975 -1.4229 15 6 6.3714 -3.0940 -0.6381 16 6 7.5466 -3.1840 -1.6157 17 6 7.6654 -1.8682 -2.3882 18 7 6.4214 -1.6224 -3.1313 19 6 6.5384 -0.4230 -3.9714 20 6 7.6653 -0.6066 -4.9551 21 1 8.2376 -1.5226 -4.9558 22 6 7.9655 0.3946 -5.8541 23 7 7.2683 1.5097 -5.8536 24 14 9.3627 0.1673 -7.0730 25 1 8.8385 -0.4516 -8.3170 26 1 9.9615 1.4883 -7.3917 27 1 10.3987 -0.7155 -6.4794 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.9499 -0.8401 0.0004 32 1 5.2112 2.5793 -0.5488 33 1 3.6880 2.8817 -1.4193 34 1 3.8170 3.2743 0.3120 35 1 3.9467 1.4394 2.0028 36 1 3.9100 -0.2604 1.4760 37 1 5.3408 0.7438 1.1414 38 1 6.0670 0.4475 -1.7603 39 1 5.8079 -0.6056 -0.3374 40 1 3.4125 -2.0974 -3.2006 41 1 4.2392 -0.7053 -3.9658 42 1 4.2592 -2.6689 -0.7282 43 1 4.8747 -3.6277 -2.0958 44 1 6.2642 -4.0409 -0.1088 45 1 6.5545 -2.2941 0.0793 46 1 7.3761 -4.0023 -2.3152 47 1 8.4680 -3.3650 -1.0619 48 1 8.4996 -1.9311 -3.0869 49 1 7.8383 -1.0505 -1.6885 50 1 5.6054 -0.2662 -4.5128 51 1 6.7432 0.4430 -3.3419 52 1 7.4798 2.2143 -6.4858 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032047.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:20 Heat of formation + Delta-G solvation = -64.350525 kcal Electronic energy + Delta-G solvation = -32771.128830 eV Core-core repulsion = 28770.406264 eV Total energy + Delta-G solvation = -4000.722566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.67829 -40.88899 -39.32152 -37.39740 -35.62150 -35.49660 -35.11953 -33.66359 -31.72159 -29.10824 -28.95228 -28.61696 -28.18368 -26.82871 -25.52156 -23.88791 -23.13715 -22.41257 -21.81842 -20.57062 -19.28117 -18.80005 -18.44010 -17.32225 -17.24101 -16.93758 -16.77366 -16.32214 -15.91346 -15.62606 -15.56584 -15.40682 -15.13146 -15.01985 -14.84545 -14.25454 -14.16261 -14.01259 -13.87024 -13.68372 -13.61299 -13.50255 -13.22704 -13.18830 -13.09264 -12.99811 -12.82738 -12.68215 -12.57546 -12.53445 -12.30673 -12.04965 -11.94377 -11.57788 -11.38071 -11.11779 -10.99141 -10.87163 -10.78644 -10.54119 -9.95353 -9.81571 -8.89495 -8.18740 -6.26990 1.27052 1.41941 1.42976 1.46607 1.53077 1.95295 2.26560 2.40888 3.04251 3.16294 3.34036 3.57739 3.72043 3.74803 3.83227 3.86587 3.88484 4.20266 4.29676 4.39235 4.41297 4.42864 4.53407 4.56031 4.58364 4.61157 4.65929 4.69792 4.71155 4.77368 4.86473 4.90309 5.00656 5.02172 5.07586 5.11133 5.13021 5.23240 5.31613 5.35758 5.39679 5.40532 5.46950 5.53206 5.65152 5.70471 5.91906 6.10659 6.39110 6.46025 6.73062 6.91170 7.03705 7.15561 7.42734 8.91727 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.004103 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.490232 B = 6822.727667 C = 7731.979735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.700 5.700 3 C 0.528 3.472 4 O -0.582 6.582 5 C 0.157 3.843 6 C -0.141 4.141 7 C -0.146 4.146 8 N -0.598 5.598 9 C 0.077 3.923 10 C 0.113 3.887 11 C -0.151 4.151 12 C 0.512 3.488 13 O -0.551 6.551 14 C -0.092 4.092 15 C -0.113 4.113 16 C -0.111 4.111 17 C 0.061 3.939 18 N -0.520 5.520 19 C 0.203 3.797 20 C -0.519 4.519 21 H 0.067 0.933 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.961 3.039 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.260 1.260 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.031 0.969 31 H 0.406 0.594 32 H 0.076 0.924 33 H 0.026 0.974 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.080 0.920 48 H 0.060 0.940 49 H 0.023 0.977 50 H 0.009 0.991 51 H -0.028 1.028 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.788 -10.650 17.879 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.349 5.349 3 C 0.314 3.686 4 O -0.462 6.462 5 C 0.070 3.930 6 C -0.200 4.200 7 C -0.203 4.203 8 N -0.334 5.334 9 C -0.047 4.047 10 C 0.021 3.979 11 C -0.191 4.191 12 C 0.301 3.699 13 O -0.429 6.429 14 C -0.130 4.130 15 C -0.151 4.151 16 C -0.149 4.149 17 C -0.066 4.066 18 N -0.244 5.244 19 C 0.078 3.922 20 C -0.557 4.557 21 H 0.085 0.915 22 C -0.194 4.194 23 N -0.575 5.575 24 Si 0.786 3.214 25 H -0.204 1.204 26 H -0.214 1.214 27 H -0.184 1.184 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.241 0.759 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.098 0.902 48 H 0.079 0.921 49 H 0.042 0.958 50 H 0.027 0.973 51 H -0.011 1.011 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.961 -9.978 17.533 20.774 hybrid contribution 0.879 1.309 -1.224 1.996 sum -4.082 -8.669 16.308 18.915 Atomic orbital electron populations 1.21487 0.78939 1.03615 1.00629 1.45481 1.08249 1.07943 1.73224 1.20403 0.89546 0.83935 0.74752 1.90645 1.70492 1.32962 1.52122 1.20717 0.90886 0.90737 0.90672 1.21961 1.01686 0.94756 1.01551 1.22113 1.02785 1.03541 0.91884 1.48479 1.11581 1.44974 1.28398 1.23035 0.82331 0.96609 1.02674 1.21455 0.90575 0.94880 0.90948 1.22592 0.97076 1.00449 0.98980 1.21275 0.85954 0.81421 0.81290 1.90746 1.16432 1.63095 1.72671 1.21447 0.99075 0.94401 0.98076 1.21626 0.93270 1.02956 0.97212 1.21605 0.99413 0.96068 0.97829 1.22039 0.91927 0.97132 0.95548 1.61775 1.02950 1.38740 1.20885 1.19494 0.95669 0.85994 0.91078 1.21518 1.15925 1.01642 1.16664 0.91484 1.25816 0.99210 0.94871 0.99482 1.70093 1.42095 1.07149 1.38161 0.85506 0.79442 0.77287 0.79146 1.20370 1.21414 1.18401 0.87708 0.92285 0.94994 0.75911 0.90486 0.95461 0.89711 0.89543 0.89492 0.89098 0.93153 0.86817 0.86366 0.89332 0.89779 0.90531 0.89230 0.91200 0.91808 0.90154 0.92128 0.95850 0.97325 1.01087 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.22 10.57 127.77 1.35 3.57 16 2 N -0.70 -17.81 3.42 -484.54 -1.66 -19.47 16 3 C 0.53 16.50 5.09 87.66 0.45 16.95 16 4 O -0.58 -22.75 16.00 -3.02 -0.05 -22.80 16 5 C 0.16 4.16 1.05 2.86 0.00 4.16 16 6 C -0.14 -4.21 8.19 71.98 0.59 -3.62 16 7 C -0.15 -2.41 8.01 71.98 0.58 -1.83 16 8 N -0.60 -16.84 2.66 -775.29 -2.06 -18.91 16 9 C 0.08 2.09 4.58 86.63 0.40 2.48 16 10 C 0.11 3.18 0.60 4.12 0.00 3.19 16 11 C -0.15 -4.89 5.86 30.41 0.18 -4.71 16 12 C 0.51 16.97 6.96 87.93 0.61 17.58 16 13 O -0.55 -21.20 13.84 -3.04 -0.04 -21.24 16 14 C -0.09 -1.78 4.76 30.42 0.14 -1.63 16 15 C -0.11 -1.81 5.80 30.72 0.18 -1.63 16 16 C -0.11 -2.39 6.07 30.65 0.19 -2.20 16 17 C 0.06 1.92 5.04 86.30 0.44 2.35 16 18 N -0.52 -18.77 4.53 -850.72 -3.85 -22.63 16 19 C 0.20 9.79 4.10 85.56 0.35 10.14 16 20 C -0.52 -27.46 8.42 25.60 0.22 -27.25 16 21 H 0.07 3.44 6.68 -2.91 -0.02 3.42 16 22 C 0.00 0.23 5.46 84.65 0.46 0.70 16 23 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 24 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 26 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 27 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 28 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.41 8.43 7.87 -92.71 -0.73 7.70 16 32 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 2.32 7.94 -2.39 -0.02 2.30 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.27 7.10 -2.38 -0.02 1.26 16 38 H 0.05 1.76 5.72 -2.39 -0.01 1.75 16 39 H 0.11 2.24 4.94 -2.38 -0.01 2.23 16 40 H 0.12 3.29 7.88 -2.38 -0.02 3.27 16 41 H 0.09 3.65 5.28 -2.39 -0.01 3.63 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.07 0.98 6.58 -2.39 -0.02 0.97 16 46 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 48 H 0.06 2.23 6.32 -2.39 -0.02 2.22 16 49 H 0.02 0.72 7.24 -2.39 -0.02 0.71 16 50 H 0.01 0.48 5.52 -2.38 -0.01 0.47 16 51 H -0.03 -1.49 6.14 -2.39 -0.01 -1.50 16 52 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -73.51 386.37 0.98 -72.54 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.20 Total: 24.14 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 6.13 Total: 18.24 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -7.29 Total: -115.99 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.09 Total: -44.04 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -73.51 0.98 -72.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032047.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.185 kcal (2) G-P(sol) polarization free energy of solvation -73.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds