Wall clock time and date at job start Tue Mar 31 2020 19:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 119.99729 * 2 1 4 4 O 1.21275 * 120.00480 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99792 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47039 * 205.00081 * 5 3 2 7 7 C 1.53000 * 109.47472 * 84.99895 * 5 3 2 8 8 N 1.46498 * 109.47490 * 324.99788 * 5 3 2 9 9 C 1.34776 * 120.00727 * 180.02562 * 8 5 3 10 10 O 1.21280 * 119.99349 * 359.97438 * 9 8 5 11 11 C 1.50698 * 120.00292 * 180.02562 * 9 8 5 12 12 H 1.09000 * 115.55420 * 57.12286 * 11 9 8 13 13 C 1.53050 * 117.53086 * 202.87310 * 11 9 8 14 14 C 1.52731 * 59.94563 * 107.45382 * 13 11 9 15 15 C 1.53217 * 117.84279 * 252.25576 * 14 13 11 16 16 C 1.53259 * 108.61792 * 162.98732 * 15 14 13 17 17 N 1.46810 * 109.44783 * 55.60202 * 16 15 14 18 18 C 1.46897 * 111.00532 * 170.80054 * 17 16 15 19 19 C 1.50701 * 109.46932 * 64.98852 * 18 17 16 20 20 H 1.07998 * 119.99950 * 355.01035 * 19 18 17 21 21 C 1.37879 * 119.99956 * 175.00148 * 19 18 17 22 22 N 1.31515 * 119.99908 * 0.28547 * 21 19 18 23 23 Si 1.86798 * 119.99909 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47150 * 60.00361 * 23 21 19 25 25 H 1.48500 * 109.47164 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47546 * 300.00751 * 23 21 19 27 27 C 1.46813 * 111.56771 * 295.17090 * 17 16 15 28 28 C 1.53213 * 117.84937 * 107.74347 * 14 13 11 29 29 H 1.08997 * 109.47500 * 60.00190 * 1 2 3 30 30 H 1.09005 * 109.47084 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46992 * 299.99416 * 1 2 3 32 32 H 0.96998 * 120.00151 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.46950 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.46974 * 300.00006 * 6 5 3 35 35 H 1.09003 * 109.47435 * 59.99853 * 6 5 3 36 36 H 1.09000 * 109.46903 * 300.00371 * 7 5 3 37 37 H 1.09000 * 109.46864 * 59.99796 * 7 5 3 38 38 H 1.08999 * 109.47693 * 179.97438 * 7 5 3 39 39 H 0.97004 * 119.99529 * 0.02562 * 8 5 3 40 40 H 1.08999 * 117.50728 * 359.97438 * 13 11 9 41 41 H 1.09000 * 117.50176 * 214.92880 * 13 11 9 42 42 H 1.09000 * 109.61487 * 43.25148 * 15 14 13 43 43 H 1.08991 * 109.75625 * 282.81070 * 15 14 13 44 44 H 1.08994 * 109.47777 * 295.60424 * 16 15 14 45 45 H 1.09004 * 109.47438 * 175.59429 * 16 15 14 46 46 H 1.09003 * 109.46942 * 304.99727 * 18 17 16 47 47 H 1.08998 * 109.47365 * 184.99305 * 18 17 16 48 48 H 0.96994 * 119.99733 * 359.71619 * 22 21 19 49 49 H 1.08992 * 109.47714 * 184.81495 * 27 17 16 50 50 H 1.08998 * 109.47342 * 304.83819 * 27 17 16 51 51 H 1.08997 * 109.61316 * 316.75772 * 28 14 13 52 52 H 1.09005 * 109.60584 * 77.09676 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6458 1.1672 -0.0006 6 6 4.1560 2.4745 0.6092 7 6 4.1554 1.0418 -1.4378 8 7 4.1346 0.0357 0.7912 9 6 5.4597 -0.1658 0.9324 10 8 6.2475 0.5894 0.4035 11 6 5.9623 -1.3301 1.7465 12 1 5.6160 -2.3126 1.4255 13 6 7.3770 -1.2325 2.3222 14 6 6.1657 -1.1083 3.2442 15 6 5.8379 0.2764 3.8123 16 6 4.3968 0.2626 4.3338 17 7 4.2407 -0.8225 5.3103 18 6 2.9427 -0.7342 5.9925 19 6 1.8350 -0.9572 4.9952 20 1 2.0668 -1.0652 3.9460 21 6 0.5258 -1.0233 5.4225 22 7 0.2432 -0.8863 6.6996 23 14 -0.8471 -1.3004 4.1865 24 1 -0.6317 -2.5935 3.4889 25 1 -2.1520 -1.3309 4.8947 26 1 -0.8492 -0.1966 3.1932 27 6 4.4189 -2.1396 4.6867 28 6 5.8613 -2.2767 4.1873 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.9500 -0.8400 0.0004 33 1 5.2460 2.4743 0.6092 34 1 3.7924 3.3164 0.0200 35 1 3.7931 2.5638 1.6331 36 1 3.7918 0.1105 -1.8722 37 1 3.7918 1.8837 -2.0269 38 1 5.2453 1.0423 -1.4383 39 1 3.5044 -0.5686 1.2139 40 1 7.9447 -0.3261 2.1118 41 1 7.9615 -2.1508 2.3799 42 1 5.9358 1.0264 3.0275 43 1 6.5203 0.5104 4.6292 44 1 3.7108 0.1043 3.5018 45 1 4.1742 1.2166 4.8119 46 1 2.8344 0.2533 6.4410 47 1 2.8891 -1.4949 6.7712 48 1 0.9561 -0.7428 7.3414 49 1 4.2123 -2.9195 5.4194 50 1 3.7323 -2.2394 3.8460 51 1 5.9750 -3.2189 3.6512 52 1 6.5481 -2.2522 5.0335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:57 Heat of formation + Delta-G solvation = -51.438011 kcal Electronic energy + Delta-G solvation = -32404.168258 eV Core-core repulsion = 28404.005620 eV Total energy + Delta-G solvation = -4000.162638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.00278 -39.80868 -38.37384 -36.20055 -35.32541 -34.76162 -32.89424 -31.64335 -30.56140 -29.67597 -27.55294 -27.15132 -25.63107 -24.59777 -23.06724 -22.83834 -22.63957 -20.81291 -20.53072 -19.64043 -18.82633 -17.99919 -16.90221 -16.71270 -15.92998 -15.59159 -15.36315 -15.02515 -14.71580 -14.48819 -14.32328 -14.31305 -14.00680 -13.82892 -13.54523 -13.21870 -12.93466 -12.67767 -12.60109 -12.40306 -12.34089 -12.19011 -12.01727 -11.99427 -11.87700 -11.79325 -11.50710 -11.36497 -11.05348 -10.80562 -10.64793 -10.49597 -10.30390 -10.22285 -10.02137 -9.82824 -9.58135 -9.39615 -9.30141 -9.23181 -9.17263 -8.45755 -7.18757 -6.44998 -4.19593 2.34471 2.54198 2.96987 3.06846 3.27052 3.31049 3.49700 3.76015 4.41178 4.42064 4.56981 4.70879 4.78732 4.81267 4.88615 4.96103 5.05705 5.15476 5.21488 5.28105 5.47567 5.49913 5.55291 5.59040 5.65557 5.72152 5.75985 5.82832 5.86713 5.87405 5.96540 6.00135 6.03654 6.06177 6.17464 6.20919 6.26889 6.32412 6.34501 6.39562 6.49640 6.61580 6.72482 7.01590 7.16726 7.25032 7.37658 7.80828 8.01793 8.03439 8.12625 8.17006 8.42155 8.71770 9.53889 10.91778 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008261 B = 0.006353 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.644589 B = 4406.032918 C = 6916.563088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.730 5.730 3 C 0.518 3.482 4 O -0.523 6.523 5 C 0.163 3.837 6 C -0.151 4.151 7 C -0.158 4.158 8 N -0.722 5.722 9 C 0.560 3.440 10 O -0.534 6.534 11 C -0.193 4.193 12 H 0.124 0.876 13 C -0.142 4.142 14 C -0.082 4.082 15 C -0.085 4.085 16 C 0.072 3.928 17 N -0.536 5.536 18 C 0.176 3.824 19 C -0.625 4.625 20 H 0.048 0.952 21 C 0.023 3.977 22 N -0.907 5.907 23 Si 1.057 2.943 24 H -0.288 1.288 25 H -0.282 1.282 26 H -0.285 1.285 27 C 0.071 3.929 28 C -0.081 4.081 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.400 0.600 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.403 0.597 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.035 0.965 45 H 0.062 0.938 46 H 0.018 0.982 47 H 0.023 0.977 48 H 0.270 0.730 49 H 0.065 0.935 50 H 0.036 0.964 51 H 0.061 0.939 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.109 -2.560 -13.797 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.382 5.382 3 C 0.302 3.698 4 O -0.397 6.397 5 C 0.075 3.925 6 C -0.209 4.209 7 C -0.216 4.216 8 N -0.377 5.377 9 C 0.348 3.652 10 O -0.411 6.411 11 C -0.214 4.214 12 H 0.142 0.858 13 C -0.179 4.179 14 C -0.083 4.083 15 C -0.123 4.123 16 C -0.057 4.057 17 N -0.260 5.260 18 C 0.050 3.950 19 C -0.664 4.664 20 H 0.066 0.934 21 C -0.183 4.183 22 N -0.543 5.543 23 Si 0.886 3.114 24 H -0.215 1.215 25 H -0.207 1.207 26 H -0.212 1.212 27 C -0.058 4.058 28 C -0.119 4.119 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.234 0.766 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.239 0.761 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.054 0.946 45 H 0.081 0.919 46 H 0.036 0.964 47 H 0.041 0.959 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.054 0.946 51 H 0.080 0.920 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.893 -1.331 -13.969 16.099 hybrid contribution 0.610 -0.815 -0.304 1.063 sum 8.503 -2.147 -14.272 16.751 Atomic orbital electron populations 1.21668 0.78965 1.02726 1.02781 1.45831 1.08270 1.08595 1.75523 1.20501 0.89288 0.84015 0.75952 1.90726 1.69436 1.31113 1.48474 1.20546 0.89464 0.88977 0.93559 1.22062 1.03133 0.94299 1.01424 1.22176 1.04460 1.02271 0.92680 1.46162 1.07749 1.30164 1.53621 1.19585 0.81475 0.84942 0.79212 1.90616 1.55491 1.46931 1.48083 1.22388 1.03206 0.98419 0.97393 0.85790 1.23014 0.89477 1.03882 1.01517 1.21615 1.00232 0.98189 0.88218 1.21347 0.98341 0.92757 0.99834 1.21791 0.93572 0.95434 0.94883 1.62170 1.34404 1.01347 1.28083 1.19828 0.84404 0.96495 0.94272 1.22456 0.93980 1.55173 0.94765 0.93394 1.25694 0.99352 0.93950 0.99283 1.70780 1.36754 1.44903 1.01855 0.83725 0.76383 0.76239 0.75065 1.21512 1.20674 1.21184 1.21793 0.93396 0.92525 0.98040 1.21349 0.98471 0.94427 0.97641 0.92058 0.90409 0.91358 0.76597 0.89609 0.90797 0.91864 0.92324 0.91115 0.88928 0.76126 0.87871 0.88162 0.92158 0.90785 0.94632 0.91945 0.96444 0.95940 0.91902 0.91617 0.94560 0.92035 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.70 59.85 0.64 1.62 16 2 N -0.73 -8.93 5.41 -67.08 -0.36 -9.29 16 3 C 0.52 7.55 6.65 -10.99 -0.07 7.47 16 4 O -0.52 -9.44 16.09 5.56 0.09 -9.36 16 5 C 0.16 2.12 0.98 -132.97 -0.13 1.99 16 6 C -0.15 -2.14 7.93 37.16 0.29 -1.84 16 7 C -0.16 -1.77 8.38 37.16 0.31 -1.46 16 8 N -0.72 -8.97 4.83 -48.68 -0.24 -9.21 16 9 C 0.56 7.39 5.29 -10.99 -0.06 7.34 16 10 O -0.53 -8.11 12.72 5.56 0.07 -8.04 16 11 C -0.19 -2.31 5.88 -91.87 -0.54 -2.85 16 12 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.14 -1.61 9.51 -26.84 -0.26 -1.87 16 14 C -0.08 -1.08 2.02 -154.55 -0.31 -1.39 16 15 C -0.08 -1.29 5.52 -26.49 -0.15 -1.43 16 16 C 0.07 1.33 5.08 -3.74 -0.02 1.31 16 17 N -0.54 -10.74 4.78 -235.89 -1.13 -11.86 16 18 C 0.18 4.30 4.44 -4.98 -0.02 4.28 16 19 C -0.62 -16.22 7.79 -34.44 -0.27 -16.49 16 20 H 0.05 1.21 5.93 -52.49 -0.31 0.90 16 21 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 22 N -0.91 -26.65 13.65 55.43 0.76 -25.89 16 23 Si 1.06 23.78 29.90 -169.99 -5.08 18.70 16 24 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.07 1.25 4.99 -3.74 -0.02 1.23 16 28 C -0.08 -1.10 5.87 -26.49 -0.16 -1.25 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.40 3.87 7.57 -40.82 -0.31 3.56 16 33 H 0.09 1.24 6.17 -51.93 -0.32 0.92 16 34 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.14 6.17 -51.93 -0.32 0.82 16 39 H 0.40 4.90 7.22 -40.82 -0.29 4.61 16 40 H 0.10 1.26 7.86 -51.93 -0.41 0.85 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.92 6.85 -51.93 -0.36 0.56 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.04 0.69 6.91 -51.93 -0.36 0.34 16 45 H 0.06 1.24 8.01 -51.93 -0.42 0.82 16 46 H 0.02 0.46 8.04 -51.93 -0.42 0.04 16 47 H 0.02 0.59 7.81 -51.93 -0.41 0.18 16 48 H 0.27 7.93 7.19 -40.82 -0.29 7.64 16 49 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 50 H 0.04 0.68 6.85 -51.93 -0.36 0.32 16 51 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 52 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 403.24 15.07 6.08 6.08 Total: -1.00 -31.54 403.24 -9.50 -41.04 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -8.84 Total: 10.64 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.85 Total: -2.81 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.97 Total: -56.25 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.16 Total: -17.39 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.08 Total: 18.70 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.54 -9.50 -41.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.399 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds