Wall clock time and date at job start Tue Mar 31 2020 19:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34782 * 119.99890 * 2 1 4 4 O 1.21285 * 120.00124 * 5.80576 * 3 2 1 5 5 C 1.50696 * 119.99961 * 185.80902 * 3 2 1 6 6 C 1.52997 * 109.47023 * 202.75590 * 5 3 2 7 7 C 1.53004 * 109.47122 * 82.75561 * 5 3 2 8 8 N 1.46498 * 109.47269 * 322.76014 * 5 3 2 9 9 C 1.46900 * 124.37945 * 122.99116 * 8 5 3 10 10 C 1.54748 * 105.52882 * 196.80767 * 9 8 5 11 11 C 1.53436 * 101.46368 * 335.63527 * 10 9 8 12 12 C 1.53711 * 111.11338 * 262.30689 * 11 10 9 13 13 C 1.54808 * 102.78123 * 203.56583 * 12 11 10 14 14 C 1.54074 * 105.20569 * 20.78008 * 13 12 11 15 15 N 1.47192 * 111.49191 * 145.74249 * 11 10 9 16 16 C 1.46897 * 110.99874 * 278.29266 * 15 11 10 17 17 C 1.53007 * 109.47039 * 176.48226 * 16 15 11 18 18 C 1.50691 * 109.47368 * 176.26133 * 17 16 15 19 19 H 1.08009 * 119.99987 * 4.88849 * 18 17 16 20 20 C 1.37878 * 120.00130 * 184.89294 * 18 17 16 21 21 N 1.31512 * 119.99925 * 354.51840 * 20 18 17 22 22 Si 1.86806 * 120.00023 * 174.52158 * 20 18 17 23 23 H 1.48502 * 109.46713 * 59.99755 * 22 20 18 24 24 H 1.48498 * 109.47229 * 299.99782 * 22 20 18 25 25 H 1.48499 * 109.46928 * 179.97438 * 22 20 18 26 26 C 1.34812 * 124.37290 * 303.01117 * 8 5 3 27 27 O 1.21279 * 125.17217 * 358.85213 * 26 8 5 28 28 H 1.08994 * 109.47216 * 184.77598 * 1 2 3 29 29 H 1.09003 * 109.47374 * 304.77450 * 1 2 3 30 30 H 1.09000 * 109.47672 * 64.77503 * 1 2 3 31 31 H 0.97001 * 120.00303 * 179.97438 * 2 1 3 32 32 H 1.09009 * 109.46959 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47310 * 299.99644 * 6 5 3 34 34 H 1.08994 * 109.47060 * 60.00483 * 6 5 3 35 35 H 1.08998 * 109.47453 * 300.00508 * 7 5 3 36 36 H 1.09009 * 109.47086 * 60.00185 * 7 5 3 37 37 H 1.09003 * 109.47178 * 179.97438 * 7 5 3 38 38 H 1.08998 * 110.23664 * 315.82577 * 9 8 5 39 39 H 1.09004 * 110.23830 * 77.71197 * 9 8 5 40 40 H 1.08992 * 111.03193 * 217.58793 * 10 9 8 41 41 H 1.09006 * 111.02375 * 93.67818 * 10 9 8 42 42 H 1.09002 * 110.74833 * 85.23675 * 12 11 10 43 43 H 1.09004 * 110.90459 * 321.96339 * 12 11 10 44 44 H 1.09005 * 110.29156 * 261.84613 * 13 12 11 45 45 H 1.08999 * 110.29926 * 139.71771 * 13 12 11 46 46 H 1.09001 * 109.90306 * 241.69862 * 14 13 12 47 47 H 1.08998 * 109.90162 * 120.45315 * 14 13 12 48 48 H 1.09003 * 109.47314 * 56.48457 * 16 15 11 49 49 H 1.08996 * 109.47233 * 296.47969 * 16 15 11 50 50 H 1.09003 * 109.46763 * 56.25868 * 17 16 15 51 51 H 1.09001 * 109.47017 * 296.26511 * 17 16 15 52 52 H 0.97002 * 120.00089 * 5.12240 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5371 2.2149 0.1062 5 6 3.6400 1.1706 -0.1321 6 6 4.1999 2.4720 0.4456 7 6 4.0222 1.0625 -1.6097 8 7 4.1973 0.0313 0.6010 9 6 5.0493 -1.0044 0.0014 10 6 5.0310 -2.1857 1.0007 11 6 4.6921 -1.4687 2.3143 12 6 5.9613 -1.1856 3.1339 13 6 5.4161 -1.0613 4.5775 14 6 4.0555 -1.7841 4.5592 15 7 3.8586 -2.3100 3.1884 16 6 2.4450 -2.2389 2.7952 17 6 1.6244 -3.1910 3.6677 18 6 0.1632 -3.0509 3.3273 19 1 -0.1425 -2.4119 2.5119 20 6 -0.7836 -3.7383 4.0568 21 7 -0.4072 -4.5981 4.9780 22 14 -2.6010 -3.4484 3.7365 23 1 -2.9160 -3.7913 2.3264 24 1 -2.9255 -2.0204 3.9831 25 1 -3.4063 -4.3034 4.6452 26 6 3.9943 -0.2025 1.9131 27 8 3.3462 0.5035 2.6563 28 1 -0.3633 -1.0240 0.0856 29 1 -0.3634 0.5861 0.8441 30 1 -0.3634 0.4379 -0.9296 31 1 1.9500 -0.8400 0.0004 32 1 5.2858 2.4743 0.3505 33 1 3.7853 3.3197 -0.0999 34 1 3.9277 2.5490 1.4982 35 1 3.6233 0.1354 -2.0213 36 1 3.6076 1.9103 -2.1552 37 1 5.1081 1.0654 -1.7053 38 1 4.6421 -1.3175 -0.9600 39 1 6.0656 -0.6307 -0.1239 40 1 6.0082 -2.6651 1.0577 41 1 4.2576 -2.9078 0.7385 42 1 6.4268 -0.2529 2.8151 43 1 6.6665 -2.0133 3.0573 44 1 5.2835 -0.0123 4.8425 45 1 6.0929 -1.5469 5.2804 46 1 3.2590 -1.0819 4.8051 47 1 4.0626 -2.6064 5.2746 48 1 2.3439 -2.5269 1.7488 49 1 2.0816 -1.2199 2.9283 50 1 1.7781 -2.9444 4.7183 51 1 1.9434 -4.2171 3.4850 52 1 0.5330 -4.6945 5.1962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039806.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:29 Heat of formation + Delta-G solvation = -89.164170 kcal Electronic energy + Delta-G solvation = -32994.365273 eV Core-core repulsion = 28992.566706 eV Total energy + Delta-G solvation = -4001.798567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.77467 -41.00162 -38.85755 -37.79203 -36.16387 -35.81561 -35.12749 -33.67690 -31.07173 -30.10366 -29.25789 -28.51760 -27.85298 -26.11120 -24.90732 -24.34408 -23.54871 -22.49463 -21.58608 -20.99723 -20.07848 -18.94090 -18.84784 -17.60513 -17.34544 -16.79839 -16.63558 -16.42279 -16.12245 -15.83863 -15.67198 -15.57561 -15.26857 -15.02954 -14.76621 -14.50062 -14.37562 -14.13785 -13.74402 -13.64019 -13.60254 -13.36705 -13.35652 -13.23710 -13.10486 -12.95096 -12.77213 -12.72017 -12.58770 -12.44505 -12.27263 -12.24040 -12.02306 -11.72811 -11.69135 -11.59857 -11.22452 -11.02871 -10.82042 -10.52761 -10.30414 -9.80876 -9.37197 -8.71959 -6.41843 1.24052 1.40468 1.45879 1.55170 1.73764 1.86969 2.14818 2.49778 2.84778 3.12565 3.32637 3.44933 3.51246 3.57131 3.75447 3.81560 3.86255 4.00389 4.08670 4.23714 4.26391 4.30180 4.42774 4.42946 4.50188 4.55409 4.59681 4.64300 4.69506 4.71830 4.74710 4.80680 4.82521 4.83066 4.87871 5.01117 5.05819 5.11249 5.13982 5.15929 5.18005 5.20434 5.25687 5.37031 5.48406 5.72622 5.90286 5.97001 6.05564 6.14144 6.31069 6.53831 6.99175 7.08628 7.39167 8.68509 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010593 B = 0.005159 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.611810 B = 5426.163954 C = 7169.604860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.720 5.720 3 C 0.506 3.494 4 O -0.580 6.580 5 C 0.169 3.831 6 C -0.140 4.140 7 C -0.142 4.142 8 N -0.613 5.613 9 C 0.096 3.904 10 C -0.109 4.109 11 C 0.047 3.953 12 C -0.087 4.087 13 C -0.123 4.123 14 C 0.038 3.962 15 N -0.485 5.485 16 C 0.080 3.920 17 C 0.026 3.974 18 C -0.613 4.613 19 H 0.046 0.954 20 C -0.034 4.034 21 N -0.934 5.934 22 Si 1.111 2.889 23 H -0.259 1.259 24 H -0.279 1.279 25 H -0.281 1.281 26 C 0.500 3.500 27 O -0.559 6.559 28 H 0.088 0.912 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.405 0.595 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.029 0.971 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.132 0.868 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.054 0.946 45 H 0.097 0.903 46 H 0.009 0.991 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.016 0.984 50 H -0.019 1.019 51 H -0.005 1.005 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.035 7.213 -16.865 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.369 5.369 3 C 0.292 3.708 4 O -0.459 6.459 5 C 0.081 3.919 6 C -0.199 4.199 7 C -0.199 4.199 8 N -0.350 5.350 9 C -0.025 4.025 10 C -0.147 4.147 11 C -0.047 4.047 12 C -0.125 4.125 13 C -0.161 4.161 14 C -0.091 4.091 15 N -0.208 5.208 16 C -0.048 4.048 17 C -0.011 4.011 18 C -0.651 4.651 19 H 0.065 0.935 20 C -0.231 4.231 21 N -0.572 5.572 22 Si 0.932 3.068 23 H -0.184 1.184 24 H -0.205 1.205 25 H -0.206 1.206 26 C 0.287 3.713 27 O -0.436 6.436 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.240 0.760 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.150 0.850 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.137 0.863 44 H 0.073 0.927 45 H 0.116 0.884 46 H 0.028 0.972 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.034 0.966 50 H -0.001 1.001 51 H 0.013 0.987 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.840 7.321 -16.086 24.412 hybrid contribution 0.464 1.065 0.688 1.350 sum 17.305 8.386 -15.398 24.635 Atomic orbital electron populations 1.21578 0.79459 1.03219 1.01495 1.45744 1.08116 1.08860 1.74229 1.21492 0.91413 0.83303 0.74604 1.90655 1.71188 1.33045 1.50964 1.20641 0.86861 0.87689 0.96696 1.21952 1.02350 0.95194 1.00360 1.22107 1.05374 1.04463 0.88002 1.48829 1.51050 1.26045 1.09098 1.22681 0.96344 0.85642 0.97799 1.22630 1.05692 0.96901 0.89501 1.22476 0.95387 0.89685 0.97116 1.22331 0.94090 1.04154 0.91905 1.22430 0.94840 0.99697 0.99143 1.22817 0.97496 0.97214 0.91524 1.64846 1.07318 1.46697 1.01894 1.21999 0.86801 0.97370 0.98655 1.19000 0.94481 0.93988 0.93636 1.22329 0.93101 1.31000 1.18714 0.93522 1.27317 1.10231 0.92162 0.93433 1.70897 1.18883 1.33809 1.33565 0.83031 0.69868 0.76445 0.77465 1.18386 1.20526 1.20572 1.21757 0.79806 0.87297 0.82485 1.90742 1.41847 1.53771 1.57198 0.89287 0.94959 0.90561 0.76022 0.88421 0.90622 0.95197 0.89897 0.90179 0.86860 0.87200 0.86691 0.84962 0.90413 0.89400 0.86326 0.92740 0.88411 0.97236 0.91406 0.91851 0.96590 1.00076 0.98714 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.68 10.73 127.77 1.37 4.05 16 2 N -0.72 -22.03 5.53 -484.52 -2.68 -24.71 16 3 C 0.51 16.28 5.77 87.65 0.51 16.78 16 4 O -0.58 -23.40 16.05 -3.05 -0.05 -23.45 16 5 C 0.17 3.75 1.03 2.86 0.00 3.76 16 6 C -0.14 -3.33 8.02 71.98 0.58 -2.75 16 7 C -0.14 -1.64 7.50 71.98 0.54 -1.11 16 8 N -0.61 -12.90 2.12 -775.23 -1.64 -14.54 16 9 C 0.10 1.02 6.22 86.90 0.54 1.56 16 10 C -0.11 -1.71 6.35 31.34 0.20 -1.51 16 11 C 0.05 1.20 0.55 2.91 0.00 1.20 16 12 C -0.09 -1.73 5.99 31.45 0.19 -1.54 16 13 C -0.12 -3.25 6.86 31.57 0.22 -3.03 16 14 C 0.04 1.40 5.05 86.43 0.44 1.84 16 15 N -0.48 -17.30 5.00 -843.70 -4.21 -21.51 16 16 C 0.08 3.54 3.85 86.31 0.33 3.87 16 17 C 0.03 1.45 4.36 29.85 0.13 1.58 16 18 C -0.61 -36.33 9.10 25.60 0.23 -36.10 16 19 H 0.05 2.69 7.75 -2.91 -0.02 2.67 16 20 C -0.03 -2.01 5.45 84.66 0.46 -1.55 16 21 N -0.93 -59.70 13.65 21.45 0.29 -59.41 16 22 Si 1.11 52.10 29.91 68.60 2.05 54.15 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 26 C 0.50 15.21 4.73 87.45 0.41 15.62 16 27 O -0.56 -23.66 13.85 -3.03 -0.04 -23.70 16 28 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.03 1.19 8.10 -2.39 -0.02 1.17 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 31 H 0.41 11.22 8.12 -92.71 -0.75 10.47 16 32 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.07 1.78 7.88 -2.39 -0.02 1.77 16 34 H 0.03 0.96 6.98 -2.39 -0.02 0.95 16 35 H 0.08 0.77 7.34 -2.39 -0.02 0.75 16 36 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.11 0.57 7.89 -2.39 -0.02 0.55 16 38 H 0.11 0.64 6.95 -2.39 -0.02 0.62 16 39 H 0.12 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.13 1.17 7.64 -2.39 -0.02 1.15 16 41 H 0.08 1.49 7.39 -2.38 -0.02 1.47 16 42 H 0.09 1.47 8.01 -2.39 -0.02 1.45 16 43 H 0.12 1.64 7.78 -2.38 -0.02 1.62 16 44 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.01 0.42 7.47 -2.39 -0.02 0.40 16 47 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 48 H 0.06 2.62 7.38 -2.39 -0.02 2.60 16 49 H 0.02 0.82 5.76 -2.39 -0.01 0.80 16 50 H -0.02 -1.15 7.07 -2.39 -0.02 -1.17 16 51 H -0.01 -0.31 8.08 -2.39 -0.02 -0.33 16 52 H 0.25 16.58 7.24 -92.71 -0.67 15.91 16 Total: -1.00 -88.58 398.94 0.12 -88.46 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.25 Total: 22.03 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 6.15 Total: 2.67 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -8.24 Total: -120.16 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -0.09 Total: -47.15 kcal Atomic # 14 Polarization: 52.10 SS G_CDS: 2.05 Total: 54.15 kcal Total: -88.58 0.12 -88.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039806.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.707 kcal (2) G-P(sol) polarization free energy of solvation -88.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds