Wall clock time and date at job start Tue Mar 31 2020 19:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34771 * 120.00085 * 2 1 4 4 O 1.21281 * 119.99973 * 5.33510 * 3 2 1 5 5 C 1.50699 * 119.99891 * 185.33897 * 3 2 1 6 6 C 1.53004 * 109.46804 * 204.18967 * 5 3 2 7 7 C 1.52997 * 109.47445 * 84.19251 * 5 3 2 8 8 N 1.46494 * 109.47239 * 324.18812 * 5 3 2 9 9 C 1.46902 * 124.37557 * 119.30282 * 8 5 3 10 10 C 1.54745 * 105.52797 * 196.76894 * 9 8 5 11 11 C 1.53429 * 101.46553 * 335.62866 * 10 9 8 12 12 C 1.53876 * 111.12667 * 144.95917 * 11 10 9 13 13 C 1.54811 * 102.70834 * 156.36561 * 12 11 10 14 14 C 1.54083 * 105.28464 * 339.32237 * 13 12 11 15 15 N 1.47182 * 111.48818 * 261.60232 * 11 10 9 16 16 C 1.46904 * 110.99994 * 81.72344 * 15 11 10 17 17 C 1.52997 * 109.46865 * 187.17703 * 16 15 11 18 18 C 1.50702 * 109.46909 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00125 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99694 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99723 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00465 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47079 * 90.00074 * 22 20 18 24 24 H 1.48497 * 109.47431 * 210.00009 * 22 20 18 25 25 H 1.48502 * 109.47258 * 330.00125 * 22 20 18 26 26 C 1.34807 * 124.38133 * 299.28206 * 8 5 3 27 27 O 1.21286 * 125.16592 * 358.86852 * 26 8 5 28 28 H 1.08995 * 109.46533 * 60.00232 * 1 2 3 29 29 H 1.08998 * 109.46841 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46827 * 299.99920 * 1 2 3 31 31 H 0.97000 * 119.99843 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46874 * 179.97438 * 6 5 3 33 33 H 1.08993 * 109.47504 * 300.00229 * 6 5 3 34 34 H 1.09002 * 109.47200 * 60.00694 * 6 5 3 35 35 H 1.08998 * 109.47112 * 300.00228 * 7 5 3 36 36 H 1.09004 * 109.47066 * 59.99400 * 7 5 3 37 37 H 1.09000 * 109.47539 * 179.97438 * 7 5 3 38 38 H 1.08999 * 110.23713 * 315.78218 * 9 8 5 39 39 H 1.09003 * 110.23507 * 77.66907 * 9 8 5 40 40 H 1.09005 * 111.02765 * 217.58382 * 10 9 8 41 41 H 1.08996 * 111.02777 * 93.67753 * 10 9 8 42 42 H 1.09003 * 110.73981 * 38.08414 * 12 11 10 43 43 H 1.09001 * 110.83635 * 274.68383 * 12 11 10 44 44 H 1.08997 * 110.29743 * 220.34920 * 13 12 11 45 45 H 1.08995 * 110.29755 * 98.29981 * 13 12 11 46 46 H 1.08998 * 109.90022 * 118.26915 * 14 13 12 47 47 H 1.08998 * 109.90242 * 239.50777 * 14 13 12 48 48 H 1.08997 * 109.46738 * 307.17858 * 16 15 11 49 49 H 1.09002 * 109.46864 * 67.17709 * 16 15 11 50 50 H 1.09002 * 109.47632 * 300.00119 * 17 16 15 51 51 H 1.09003 * 109.46851 * 60.00282 * 17 16 15 52 52 H 0.97001 * 119.99735 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5365 2.2152 0.0977 5 6 3.6410 1.1699 -0.1214 6 6 4.1994 2.4578 0.4872 7 6 4.0335 1.0918 -1.5981 8 7 4.1908 0.0144 0.5917 9 6 4.9804 -1.0513 -0.0398 10 6 4.9664 -2.2281 0.9649 11 6 4.7100 -1.4960 2.2886 12 6 3.8340 -2.3417 3.2295 13 6 4.1937 -1.7797 4.6265 14 6 5.5587 -1.0878 4.4468 15 7 5.9602 -1.2741 3.0330 16 6 6.6710 -0.0920 2.5275 17 6 8.0427 0.0037 3.1985 18 6 8.7722 1.2160 2.6795 19 1 8.3042 1.8545 1.9449 20 6 10.0372 1.5099 3.1425 21 7 10.6737 2.5681 2.6900 22 14 10.8471 0.4052 4.4125 23 1 11.6172 -0.6607 3.7224 24 1 11.7650 1.2114 5.2566 25 1 9.8030 -0.2136 5.2682 26 6 4.0378 -0.2083 1.9125 27 8 3.4473 0.5217 2.6802 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 5.2859 2.4596 0.3998 33 1 3.7904 3.3176 -0.0433 34 1 3.9200 2.5135 1.5393 35 1 3.6356 0.1744 -2.0318 36 1 3.6244 1.9516 -2.1288 37 1 5.1200 1.0943 -1.6860 38 1 4.5211 -1.3536 -0.9809 39 1 6.0021 -0.7123 -0.2113 40 1 5.9286 -2.7400 0.9811 41 1 4.1586 -2.9245 0.7403 42 1 4.0978 -3.3969 3.1580 43 1 2.7762 -2.1916 3.0137 44 1 4.2732 -2.5901 5.3510 45 1 3.4433 -1.0577 4.9483 46 1 5.4680 -0.0248 4.6698 47 1 6.2965 -1.5460 5.1054 48 1 6.7995 -0.1792 1.4486 49 1 6.0927 0.8039 2.7533 50 1 7.9142 0.0908 4.2774 51 1 8.6210 -0.8922 2.9726 52 1 11.5638 2.7747 3.0155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039807.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:31 Heat of formation + Delta-G solvation = -82.742443 kcal Electronic energy + Delta-G solvation = -32687.459496 eV Core-core repulsion = 28685.939397 eV Total energy + Delta-G solvation = -4001.520100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.77771 -40.99704 -38.78031 -37.74196 -35.86111 -35.74130 -35.07864 -33.87763 -31.04092 -30.78937 -29.29187 -28.50307 -27.84622 -26.40157 -24.82834 -24.33663 -23.05902 -22.38934 -21.37213 -20.93290 -20.13188 -19.04459 -18.83196 -17.72544 -17.33255 -16.80755 -16.58938 -16.41511 -16.17344 -16.01366 -15.70130 -15.38559 -15.13865 -14.93107 -14.79752 -14.54206 -14.29816 -14.08910 -13.76216 -13.62218 -13.58739 -13.46516 -13.31668 -13.27521 -13.14926 -13.12202 -13.02155 -12.75256 -12.52503 -12.36690 -12.27141 -12.11545 -11.84683 -11.69575 -11.62941 -11.48696 -11.38591 -11.21558 -10.92239 -10.78206 -10.25806 -9.76892 -9.46132 -8.32179 -6.37062 1.27046 1.34244 1.36843 1.37325 1.49041 1.89880 2.13625 2.34429 2.88629 3.03431 3.35890 3.40172 3.52160 3.66650 3.74294 3.80914 3.92674 4.05126 4.14345 4.27030 4.33108 4.37554 4.40442 4.46216 4.49687 4.53898 4.58629 4.62886 4.64336 4.74244 4.79293 4.85434 4.87504 4.89850 4.95985 5.00055 5.04676 5.06969 5.14257 5.21479 5.26344 5.26489 5.32680 5.41795 5.47709 5.56367 5.87171 5.95596 6.00867 6.23769 6.36650 6.69282 7.02354 7.10287 7.27775 8.84534 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013781 B = 0.004177 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.323683 B = 6701.797132 C = 7773.222382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.715 5.715 3 C 0.516 3.484 4 O -0.578 6.578 5 C 0.169 3.831 6 C -0.145 4.145 7 C -0.144 4.144 8 N -0.611 5.611 9 C 0.085 3.915 10 C -0.105 4.105 11 C 0.049 3.951 12 C -0.088 4.088 13 C -0.122 4.122 14 C 0.031 3.969 15 N -0.477 5.477 16 C 0.076 3.924 17 C 0.005 3.995 18 C -0.532 4.532 19 H 0.027 0.973 20 C 0.009 3.991 21 N -0.949 5.949 22 Si 0.952 3.048 23 H -0.257 1.257 24 H -0.286 1.286 25 H -0.252 1.252 26 C 0.501 3.499 27 O -0.560 6.560 28 H 0.061 0.939 29 H 0.116 0.884 30 H 0.036 0.964 31 H 0.414 0.586 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.130 0.870 42 H 0.118 0.882 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.051 0.949 46 H 0.011 0.989 47 H 0.084 0.916 48 H 0.078 0.922 49 H -0.007 1.007 50 H 0.007 0.993 51 H 0.033 0.967 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.202 -18.401 -8.953 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.366 5.366 3 C 0.301 3.699 4 O -0.456 6.456 5 C 0.081 3.919 6 C -0.204 4.204 7 C -0.201 4.201 8 N -0.347 5.347 9 C -0.036 4.036 10 C -0.143 4.143 11 C -0.044 4.044 12 C -0.126 4.126 13 C -0.160 4.160 14 C -0.097 4.097 15 N -0.201 5.201 16 C -0.051 4.051 17 C -0.033 4.033 18 C -0.571 4.571 19 H 0.045 0.955 20 C -0.188 4.188 21 N -0.589 5.589 22 Si 0.775 3.225 23 H -0.182 1.182 24 H -0.212 1.212 25 H -0.176 1.176 26 C 0.288 3.712 27 O -0.436 6.436 28 H 0.079 0.921 29 H 0.135 0.865 30 H 0.055 0.945 31 H 0.250 0.750 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.146 0.854 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.148 0.852 42 H 0.136 0.864 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.070 0.930 46 H 0.029 0.971 47 H 0.102 0.898 48 H 0.096 0.904 49 H 0.012 0.988 50 H 0.025 0.975 51 H 0.051 0.949 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.493 -17.560 -8.599 26.913 hybrid contribution 0.534 1.662 1.032 2.027 sum -17.959 -15.898 -7.568 25.151 Atomic orbital electron populations 1.21704 0.78356 1.04506 1.01281 1.45636 1.08489 1.08311 1.74199 1.20944 0.90137 0.84025 0.74786 1.90673 1.70725 1.33413 1.50830 1.20490 0.88631 0.86383 0.96383 1.21935 1.00767 0.97043 1.00641 1.22083 1.04163 1.05165 0.88693 1.48793 1.53610 1.23684 1.08658 1.22687 0.96144 0.85970 0.98768 1.22642 1.06784 0.96305 0.88542 1.22476 0.90711 0.92904 0.98297 1.22321 0.98356 1.00307 0.91649 1.22399 0.94404 1.00135 0.99096 1.22975 0.98064 0.98072 0.90571 1.64893 1.16563 1.36321 1.02288 1.22039 0.94645 0.88565 0.99876 1.19356 0.93022 0.95565 0.95333 1.21317 1.01057 1.10248 1.24440 0.95490 1.25954 0.97709 0.96585 0.98525 1.70069 1.14297 1.28752 1.45812 0.85638 0.78624 0.78981 0.79293 1.18183 1.21168 1.17625 1.21793 0.78661 0.88680 0.82085 1.90697 1.44204 1.53435 1.55307 0.92073 0.86532 0.94527 0.75036 0.92065 0.90403 0.94832 0.88005 0.90198 0.89480 0.85422 0.91390 0.87112 0.85173 0.86393 0.90221 0.88406 0.93031 0.97085 0.89816 0.90357 0.98833 0.97484 0.94898 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.71 127.77 1.37 2.71 16 2 N -0.72 -13.95 5.59 -484.53 -2.71 -16.66 16 3 C 0.52 14.62 5.97 87.66 0.52 15.15 16 4 O -0.58 -21.53 16.09 -3.03 -0.05 -21.58 16 5 C 0.17 4.40 1.04 2.86 0.00 4.40 16 6 C -0.15 -5.05 7.99 71.98 0.58 -4.47 16 7 C -0.14 -2.45 7.54 71.98 0.54 -1.90 16 8 N -0.61 -14.67 2.04 -775.24 -1.58 -16.25 16 9 C 0.08 1.32 5.38 86.90 0.47 1.79 16 10 C -0.11 -1.47 6.27 31.33 0.20 -1.27 16 11 C 0.05 1.19 0.64 2.96 0.00 1.19 16 12 C -0.09 -1.67 5.85 31.51 0.18 -1.49 16 13 C -0.12 -2.99 6.55 31.58 0.21 -2.78 16 14 C 0.03 1.02 5.61 86.43 0.49 1.51 16 15 N -0.48 -15.22 4.94 -843.38 -4.16 -19.38 16 16 C 0.08 3.15 3.77 86.30 0.33 3.48 16 17 C 0.01 0.24 4.10 29.85 0.12 0.37 16 18 C -0.53 -31.48 9.66 25.60 0.25 -31.23 16 19 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 20 C 0.01 0.56 5.47 84.65 0.46 1.02 16 21 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 22 Si 0.95 45.02 27.47 68.60 1.88 46.91 16 23 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 25 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 26 C 0.50 15.15 4.15 87.45 0.36 15.52 16 27 O -0.56 -22.51 15.47 -3.05 -0.05 -22.56 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.41 5.65 8.14 -92.71 -0.75 4.90 16 32 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.57 7.87 -2.39 -0.02 2.55 16 34 H 0.03 1.41 6.73 -2.39 -0.02 1.39 16 35 H 0.10 1.02 7.25 -2.39 -0.02 1.00 16 36 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.09 1.45 7.96 -2.39 -0.02 1.43 16 38 H 0.13 0.82 6.98 -2.39 -0.02 0.81 16 39 H 0.07 1.31 6.82 -2.39 -0.02 1.30 16 40 H 0.11 1.58 8.07 -2.38 -0.02 1.56 16 41 H 0.13 0.72 7.94 -2.39 -0.02 0.70 16 42 H 0.12 1.49 8.06 -2.39 -0.02 1.47 16 43 H 0.08 1.40 8.01 -2.39 -0.02 1.38 16 44 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.01 0.43 7.56 -2.39 -0.02 0.42 16 47 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 48 H 0.08 3.05 5.73 -2.39 -0.01 3.04 16 49 H -0.01 -0.32 6.91 -2.39 -0.02 -0.34 16 50 H 0.01 0.34 6.58 -2.39 -0.02 0.33 16 51 H 0.03 1.52 7.57 -2.39 -0.02 1.50 16 52 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -87.23 396.61 -0.19 -87.42 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.10 Total: 18.14 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 6.08 Total: 3.98 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -8.15 Total: -112.31 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.10 Total: -44.13 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Total: -87.23 -0.19 -87.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039807.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.678 kcal (2) G-P(sol) polarization free energy of solvation -87.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds