Wall clock time and date at job start Tue Mar 31 2020 19:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 120.00376 * 2 1 4 4 O 1.21279 * 119.99861 * 355.73135 * 3 2 1 5 5 C 1.50701 * 120.00201 * 175.73075 * 3 2 1 6 6 C 1.53005 * 109.47057 * 54.12625 * 5 3 2 7 7 C 1.53003 * 109.46981 * 174.12175 * 5 3 2 8 8 N 1.46499 * 109.47372 * 294.12529 * 5 3 2 9 9 C 1.46873 * 124.37254 * 172.33496 * 8 5 3 10 10 C 1.54706 * 105.52152 * 196.78815 * 9 8 5 11 11 C 1.53635 * 101.50727 * 335.46664 * 10 9 8 12 12 C 1.53603 * 110.83936 * 144.62278 * 11 10 9 13 13 C 1.55157 * 102.66484 * 99.49969 * 12 11 10 14 14 N 1.48627 * 103.36558 * 36.57122 * 13 12 11 15 15 C 1.46900 * 111.00349 * 200.85265 * 14 13 12 16 16 C 1.52998 * 109.46893 * 307.44501 * 15 14 13 17 17 C 1.50702 * 109.46682 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00264 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99465 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99601 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00327 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.46967 * 89.99933 * 21 19 17 23 23 H 1.48500 * 109.46910 * 209.99570 * 21 19 17 24 24 H 1.48495 * 109.46977 * 329.99771 * 21 19 17 25 25 C 1.48192 * 105.85570 * 321.39371 * 14 13 12 26 26 C 1.34752 * 124.36853 * 352.02754 * 8 5 3 27 27 O 1.21280 * 125.13682 * 359.03713 * 26 8 5 28 28 H 1.08998 * 109.46501 * 299.71893 * 1 2 3 29 29 H 1.08993 * 109.47247 * 59.72312 * 1 2 3 30 30 H 1.08995 * 109.46793 * 179.72752 * 1 2 3 31 31 H 0.97006 * 119.99735 * 180.28236 * 2 1 3 32 32 H 1.08993 * 109.47139 * 59.99503 * 6 5 3 33 33 H 1.08994 * 109.47156 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.46941 * 299.99866 * 6 5 3 35 35 H 1.08997 * 109.47163 * 60.00566 * 7 5 3 36 36 H 1.09002 * 109.47020 * 180.02562 * 7 5 3 37 37 H 1.09000 * 109.47011 * 299.99776 * 7 5 3 38 38 H 1.08998 * 110.23784 * 315.79967 * 9 8 5 39 39 H 1.09001 * 110.23988 * 77.69169 * 9 8 5 40 40 H 1.08992 * 111.01871 * 93.52255 * 10 9 8 41 41 H 1.09003 * 111.01978 * 217.37524 * 10 9 8 42 42 H 1.09007 * 110.77038 * 217.79164 * 12 11 10 43 43 H 1.09002 * 110.77308 * 341.19826 * 12 11 10 44 44 H 1.09004 * 110.64098 * 278.10339 * 13 12 11 45 45 H 1.09003 * 110.78403 * 155.10594 * 13 12 11 46 46 H 1.09005 * 109.46933 * 67.44252 * 15 14 13 47 47 H 1.09002 * 109.46938 * 187.44033 * 15 14 13 48 48 H 1.08996 * 109.46904 * 299.99582 * 16 15 14 49 49 H 1.08995 * 109.47069 * 60.00089 * 16 15 14 50 50 H 0.96993 * 119.99871 * 180.02562 * 20 19 17 51 51 H 1.09010 * 110.01332 * 265.81949 * 25 14 13 52 52 H 1.08994 * 110.01913 * 144.42569 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5351 2.2160 -0.0782 5 6 3.6428 1.1689 0.0972 6 6 4.2261 0.2812 -1.0042 7 6 4.1630 2.5979 -0.0707 8 7 4.0483 0.6522 1.4067 9 6 5.4359 0.3612 1.7899 10 6 5.3389 -0.5401 3.0436 11 6 3.9584 -0.1512 3.5945 12 6 3.2554 -1.3675 4.2155 13 6 3.5202 -1.1757 5.7323 14 7 3.4404 0.2975 5.9113 15 6 4.1319 0.7171 7.1376 16 6 3.6081 -0.0969 8.3224 17 6 4.3172 0.3340 9.5804 18 1 5.0667 1.1104 9.5389 19 6 4.0089 -0.2630 10.7844 20 7 4.6281 0.1127 11.8823 21 14 2.7130 -1.6065 10.8561 22 1 3.3581 -2.9279 10.6493 23 1 2.0482 -1.5825 12.1837 24 1 1.7027 -1.3769 9.7923 25 6 4.0813 0.8865 4.7120 26 6 3.1967 0.3883 2.4172 27 8 1.9964 0.5580 2.3808 28 1 -0.3632 0.5095 0.8925 29 1 -0.3633 0.5181 -0.8874 30 1 -0.3633 -1.0276 -0.0049 31 1 1.9500 -0.8401 -0.0041 32 1 3.9244 0.6656 -1.9785 33 1 5.3137 0.2821 -0.9336 34 1 3.8555 -0.7369 -0.8846 35 1 3.7476 3.2303 0.7139 36 1 5.2508 2.5992 -0.0009 37 1 3.8615 2.9822 -1.0451 38 1 5.9466 -0.1668 0.9846 39 1 5.9630 1.2851 2.0281 40 1 5.3677 -1.5947 2.7701 41 1 6.1268 -0.3020 3.7582 42 1 2.1863 -1.3459 4.0040 43 1 3.7022 -2.2958 3.8594 44 1 4.5117 -1.5420 5.9986 45 1 2.7548 -1.6769 6.3249 46 1 5.2031 0.5488 7.0263 47 1 3.9471 1.7767 7.3145 48 1 2.5370 0.0715 8.4337 49 1 3.7930 -1.1564 8.1454 50 1 4.4115 -0.3076 12.7292 51 1 5.1321 1.0941 4.9146 52 1 3.5674 1.8045 4.4271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040205.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:36 Heat of formation + Delta-G solvation = -50.239420 kcal Electronic energy + Delta-G solvation = -31354.011193 eV Core-core repulsion = 27353.900530 eV Total energy + Delta-G solvation = -4000.110663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.70960 -39.87019 -37.95717 -36.86123 -35.05437 -34.71927 -33.26151 -31.83510 -29.78489 -29.31411 -28.19871 -27.96709 -26.97155 -24.97593 -23.77611 -23.23674 -21.85832 -21.54111 -20.12910 -19.55116 -19.20898 -17.76422 -16.91573 -16.53998 -16.29295 -15.90959 -15.56562 -15.29736 -15.05199 -14.51938 -14.33126 -14.24367 -14.11487 -13.96747 -13.59511 -13.46589 -13.20226 -12.95871 -12.75020 -12.70783 -12.56562 -12.49938 -12.44624 -12.24371 -12.21896 -12.10772 -11.87965 -11.70082 -11.26959 -11.24693 -11.05957 -10.89210 -10.68722 -10.03730 -10.00400 -9.89673 -9.82152 -9.64600 -9.21456 -9.13247 -9.03626 -8.54143 -7.95220 -6.05187 -4.03508 2.08901 2.39533 2.89458 3.07547 3.30681 3.39114 3.45057 3.97847 4.10228 4.25700 4.33232 4.37842 4.45586 4.46577 4.51295 4.77079 4.84065 4.98435 5.00513 5.06828 5.11440 5.17638 5.29290 5.32785 5.36435 5.37353 5.41789 5.49450 5.51632 5.54070 5.63294 5.68509 5.76709 5.81246 5.89224 5.92338 6.04750 6.10336 6.23079 6.23915 6.28742 6.32200 6.71084 6.76069 7.11570 7.22240 7.29841 7.39623 7.59275 7.82919 7.99086 8.06347 8.51865 8.98717 9.57220 11.08180 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.002690 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.751708 B =10408.261232 C =10901.757964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.717 5.717 3 C 0.535 3.465 4 O -0.531 6.531 5 C 0.160 3.840 6 C -0.157 4.157 7 C -0.143 4.143 8 N -0.617 5.617 9 C 0.105 3.895 10 C -0.123 4.123 11 C -0.102 4.102 12 C -0.103 4.103 13 C 0.041 3.959 14 N -0.516 5.516 15 C 0.062 3.938 16 C -0.010 4.010 17 C -0.521 4.521 18 H 0.071 0.929 19 C 0.068 3.932 20 N -0.904 5.904 21 Si 0.879 3.121 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.263 1.263 25 C 0.063 3.937 26 C 0.530 3.470 27 O -0.495 6.495 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.395 0.605 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.085 0.915 46 H 0.029 0.971 47 H 0.070 0.930 48 H 0.025 0.975 49 H 0.012 0.988 50 H 0.263 0.737 51 H 0.054 0.946 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.147 -4.538 -30.047 30.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.367 5.367 3 C 0.320 3.680 4 O -0.407 6.407 5 C 0.073 3.927 6 C -0.216 4.216 7 C -0.202 4.202 8 N -0.355 5.355 9 C -0.017 4.017 10 C -0.161 4.161 11 C -0.106 4.106 12 C -0.141 4.141 13 C -0.087 4.087 14 N -0.240 5.240 15 C -0.065 4.065 16 C -0.048 4.048 17 C -0.560 4.560 18 H 0.089 0.911 19 C -0.134 4.134 20 N -0.543 5.543 21 Si 0.706 3.294 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.187 1.187 25 C -0.066 4.066 26 C 0.317 3.683 27 O -0.367 6.367 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.228 0.772 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.047 0.953 47 H 0.088 0.912 48 H 0.043 0.957 49 H 0.030 0.970 50 H 0.073 0.927 51 H 0.072 0.928 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.456 -3.485 -29.918 30.124 hybrid contribution 0.624 -1.315 0.257 1.478 sum 1.080 -4.800 -29.661 30.066 Atomic orbital electron populations 1.21444 0.79334 1.01790 1.02220 1.45489 1.07805 1.08027 1.75414 1.19883 0.88454 0.84050 0.75614 1.90696 1.69454 1.31365 1.49137 1.20593 0.92258 0.96217 0.83638 1.22181 1.02359 0.99361 0.97655 1.21971 1.00850 0.93578 1.03774 1.48563 1.08680 1.66304 1.11958 1.22121 0.82372 0.99737 0.97519 1.22786 0.96442 1.00221 0.96604 1.21524 0.95818 0.98526 0.94689 1.22453 1.01510 0.94604 0.95569 1.23220 1.00952 0.90100 0.94435 1.64994 1.51617 1.05692 1.01727 1.22328 0.94792 1.00698 0.88693 1.19620 0.97399 0.94757 0.93017 1.21068 1.22452 1.21839 0.90606 0.91103 1.24998 0.95994 0.96807 0.95556 1.69914 1.42471 1.42906 0.98969 0.86777 0.82654 0.82348 0.77588 1.20364 1.21376 1.18718 1.22635 0.98293 0.96526 0.89132 1.20545 0.86805 0.76928 0.84013 1.90774 1.13112 1.52120 1.80707 0.91711 0.92701 0.91163 0.77238 0.90540 0.90622 0.91696 0.91158 0.91516 0.90826 0.90103 0.90788 0.89538 0.88713 0.89810 0.90750 0.93353 0.89669 0.95306 0.91203 0.95681 0.96982 0.92717 0.92776 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.95 10.67 59.85 0.64 1.59 16 2 N -0.72 -7.40 4.03 -67.08 -0.27 -7.67 16 3 C 0.54 6.67 4.50 -10.99 -0.05 6.62 16 4 O -0.53 -8.80 15.99 5.56 0.09 -8.71 16 5 C 0.16 1.45 1.07 -132.97 -0.14 1.31 16 6 C -0.16 -0.83 8.16 37.16 0.30 -0.53 16 7 C -0.14 -1.27 7.95 37.16 0.30 -0.97 16 8 N -0.62 -5.72 2.77 -158.95 -0.44 -6.16 16 9 C 0.11 0.67 6.81 -2.94 -0.02 0.65 16 10 C -0.12 -0.92 6.24 -25.50 -0.16 -1.08 16 11 C -0.10 -1.17 0.77 -155.24 -0.12 -1.29 16 12 C -0.10 -1.25 6.20 -25.28 -0.16 -1.41 16 13 C 0.04 0.62 5.12 -1.73 -0.01 0.62 16 14 N -0.52 -9.06 5.41 -230.61 -1.25 -10.31 16 15 C 0.06 1.25 4.97 -3.83 -0.02 1.24 16 16 C -0.01 -0.25 3.70 -27.88 -0.10 -0.35 16 17 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 18 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 21 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 25 C 0.06 0.90 6.06 -3.11 -0.02 0.88 16 26 C 0.53 6.67 6.34 -11.22 -0.07 6.60 16 27 O -0.49 -8.05 13.69 5.56 0.08 -7.98 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.39 3.14 7.79 -40.82 -0.32 2.82 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.28 7.09 -51.93 -0.37 -0.09 16 34 H 0.06 0.30 7.18 -51.93 -0.37 -0.07 16 35 H 0.07 0.81 8.04 -51.93 -0.42 0.40 16 36 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.32 6.92 -51.93 -0.36 -0.04 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.52 7.50 -51.93 -0.39 0.13 16 41 H 0.09 0.69 7.41 -51.93 -0.39 0.30 16 42 H 0.08 1.16 7.54 -51.92 -0.39 0.76 16 43 H 0.07 0.70 7.44 -51.93 -0.39 0.32 16 44 H 0.05 0.72 7.98 -51.93 -0.41 0.31 16 45 H 0.08 1.40 7.69 -51.93 -0.40 1.00 16 46 H 0.03 0.57 7.82 -51.93 -0.41 0.16 16 47 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 48 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 49 H 0.01 0.28 6.22 -51.93 -0.32 -0.04 16 50 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 51 H 0.05 0.71 6.73 -51.92 -0.35 0.36 16 52 H 0.07 1.18 7.73 -51.93 -0.40 0.78 16 LS Contribution 397.41 15.07 5.99 5.99 Total: -1.00 -36.36 397.41 -8.78 -45.14 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -9.02 Total: -0.86 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -0.06 Total: 0.55 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -1.18 Total: -51.31 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.16 Total: -16.69 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.36 -8.78 -45.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040205.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.101 kcal (2) G-P(sol) polarization free energy of solvation -36.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds