Wall clock time and date at job start Tue Mar 31 2020 19:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 120.00376 * 2 1 4 4 O 1.21279 * 119.99861 * 355.73135 * 3 2 1 5 5 C 1.50701 * 120.00201 * 175.73075 * 3 2 1 6 6 C 1.53005 * 109.47057 * 54.12625 * 5 3 2 7 7 C 1.53003 * 109.46981 * 174.12175 * 5 3 2 8 8 N 1.46499 * 109.47372 * 294.12529 * 5 3 2 9 9 C 1.46873 * 124.37254 * 172.33496 * 8 5 3 10 10 C 1.54706 * 105.52152 * 196.78815 * 9 8 5 11 11 C 1.53635 * 101.50727 * 335.46664 * 10 9 8 12 12 C 1.53603 * 110.83936 * 144.62278 * 11 10 9 13 13 C 1.55157 * 102.66484 * 99.49969 * 12 11 10 14 14 N 1.48627 * 103.36558 * 36.57122 * 13 12 11 15 15 C 1.46900 * 111.00349 * 200.85265 * 14 13 12 16 16 C 1.52998 * 109.46893 * 307.44501 * 15 14 13 17 17 C 1.50702 * 109.46682 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00264 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99465 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99601 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00327 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.46967 * 89.99933 * 21 19 17 23 23 H 1.48500 * 109.46910 * 209.99570 * 21 19 17 24 24 H 1.48495 * 109.46977 * 329.99771 * 21 19 17 25 25 C 1.48192 * 105.85570 * 321.39371 * 14 13 12 26 26 C 1.34752 * 124.36853 * 352.02754 * 8 5 3 27 27 O 1.21280 * 125.13682 * 359.03713 * 26 8 5 28 28 H 1.08998 * 109.46501 * 299.71893 * 1 2 3 29 29 H 1.08993 * 109.47247 * 59.72312 * 1 2 3 30 30 H 1.08995 * 109.46793 * 179.72752 * 1 2 3 31 31 H 0.97006 * 119.99735 * 180.28236 * 2 1 3 32 32 H 1.08993 * 109.47139 * 59.99503 * 6 5 3 33 33 H 1.08994 * 109.47156 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.46941 * 299.99866 * 6 5 3 35 35 H 1.08997 * 109.47163 * 60.00566 * 7 5 3 36 36 H 1.09002 * 109.47020 * 180.02562 * 7 5 3 37 37 H 1.09000 * 109.47011 * 299.99776 * 7 5 3 38 38 H 1.08998 * 110.23784 * 315.79967 * 9 8 5 39 39 H 1.09001 * 110.23988 * 77.69169 * 9 8 5 40 40 H 1.08992 * 111.01871 * 93.52255 * 10 9 8 41 41 H 1.09003 * 111.01978 * 217.37524 * 10 9 8 42 42 H 1.09007 * 110.77038 * 217.79164 * 12 11 10 43 43 H 1.09002 * 110.77308 * 341.19826 * 12 11 10 44 44 H 1.09004 * 110.64098 * 278.10339 * 13 12 11 45 45 H 1.09003 * 110.78403 * 155.10594 * 13 12 11 46 46 H 1.09005 * 109.46933 * 67.44252 * 15 14 13 47 47 H 1.09002 * 109.46938 * 187.44033 * 15 14 13 48 48 H 1.08996 * 109.46904 * 299.99582 * 16 15 14 49 49 H 1.08995 * 109.47069 * 60.00089 * 16 15 14 50 50 H 0.96993 * 119.99871 * 180.02562 * 20 19 17 51 51 H 1.09010 * 110.01332 * 265.81949 * 25 14 13 52 52 H 1.08994 * 110.01913 * 144.42569 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5351 2.2160 -0.0782 5 6 3.6428 1.1689 0.0972 6 6 4.2261 0.2812 -1.0042 7 6 4.1630 2.5979 -0.0707 8 7 4.0483 0.6522 1.4067 9 6 5.4359 0.3612 1.7899 10 6 5.3389 -0.5401 3.0436 11 6 3.9584 -0.1512 3.5945 12 6 3.2554 -1.3675 4.2155 13 6 3.5202 -1.1757 5.7323 14 7 3.4404 0.2975 5.9113 15 6 4.1319 0.7171 7.1376 16 6 3.6081 -0.0969 8.3224 17 6 4.3172 0.3340 9.5804 18 1 5.0667 1.1104 9.5389 19 6 4.0089 -0.2630 10.7844 20 7 4.6281 0.1127 11.8823 21 14 2.7130 -1.6065 10.8561 22 1 3.3581 -2.9279 10.6493 23 1 2.0482 -1.5825 12.1837 24 1 1.7027 -1.3769 9.7923 25 6 4.0813 0.8865 4.7120 26 6 3.1967 0.3883 2.4172 27 8 1.9964 0.5580 2.3808 28 1 -0.3632 0.5095 0.8925 29 1 -0.3633 0.5181 -0.8874 30 1 -0.3633 -1.0276 -0.0049 31 1 1.9500 -0.8401 -0.0041 32 1 3.9244 0.6656 -1.9785 33 1 5.3137 0.2821 -0.9336 34 1 3.8555 -0.7369 -0.8846 35 1 3.7476 3.2303 0.7139 36 1 5.2508 2.5992 -0.0009 37 1 3.8615 2.9822 -1.0451 38 1 5.9466 -0.1668 0.9846 39 1 5.9630 1.2851 2.0281 40 1 5.3677 -1.5947 2.7701 41 1 6.1268 -0.3020 3.7582 42 1 2.1863 -1.3459 4.0040 43 1 3.7022 -2.2958 3.8594 44 1 4.5117 -1.5420 5.9986 45 1 2.7548 -1.6769 6.3249 46 1 5.2031 0.5488 7.0263 47 1 3.9471 1.7767 7.3145 48 1 2.5370 0.0715 8.4337 49 1 3.7930 -1.1564 8.1454 50 1 4.4115 -0.3076 12.7292 51 1 5.1321 1.0941 4.9146 52 1 3.5674 1.8045 4.4271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040205.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:34 Heat of formation + Delta-G solvation = -78.256766 kcal Electronic energy + Delta-G solvation = -31355.226116 eV Core-core repulsion = 27353.900530 eV Total energy + Delta-G solvation = -4001.325586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.56351 -40.83921 -39.11901 -37.74774 -36.19301 -35.64115 -34.99017 -33.33832 -31.09599 -30.43309 -29.16913 -28.63293 -27.68290 -26.58745 -24.48446 -24.31077 -23.43979 -22.35168 -21.44169 -20.64415 -20.14528 -19.02237 -18.60373 -17.45669 -17.14566 -16.81736 -16.57629 -16.35356 -16.22661 -16.12250 -15.55132 -15.33696 -15.14076 -14.84310 -14.81982 -14.58102 -14.17085 -13.98932 -13.95751 -13.80365 -13.63091 -13.35827 -13.26699 -13.17378 -13.10158 -12.95763 -12.89567 -12.82134 -12.59282 -12.36968 -12.32494 -11.94958 -11.87595 -11.76240 -11.66380 -11.53143 -11.35652 -10.95303 -10.77866 -10.69640 -10.01176 -9.77607 -9.31010 -8.31351 -6.35661 1.26685 1.33622 1.37765 1.45894 1.50126 2.07958 2.30052 2.35151 3.03371 3.04123 3.20111 3.42240 3.51705 3.59549 3.80649 3.88847 3.92426 4.02801 4.26006 4.36451 4.37433 4.39082 4.42125 4.48020 4.55358 4.58189 4.63897 4.64759 4.70930 4.75868 4.76414 4.81841 4.89084 4.90605 4.92691 4.97576 5.06554 5.11858 5.14172 5.15597 5.23628 5.26255 5.42468 5.44176 5.54593 5.60904 5.96800 5.99510 6.10605 6.27784 6.49522 6.71763 7.10718 7.21348 7.29208 8.85289 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.002690 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.751708 B =10408.261232 C =10901.757964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.707 5.707 3 C 0.523 3.477 4 O -0.587 6.587 5 C 0.159 3.841 6 C -0.151 4.151 7 C -0.141 4.141 8 N -0.607 5.607 9 C 0.101 3.899 10 C -0.113 4.113 11 C -0.099 4.099 12 C -0.091 4.091 13 C 0.036 3.964 14 N -0.538 5.538 15 C 0.076 3.924 16 C -0.001 4.001 17 C -0.533 4.533 18 H 0.034 0.966 19 C 0.008 3.992 20 N -0.949 5.949 21 Si 0.949 3.051 22 H -0.259 1.259 23 H -0.284 1.284 24 H -0.254 1.254 25 C 0.064 3.936 26 C 0.521 3.479 27 O -0.544 6.544 28 H 0.028 0.972 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.408 0.592 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.032 0.968 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.113 0.887 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.035 0.965 47 H 0.052 0.948 48 H 0.012 0.988 49 H 0.026 0.974 50 H 0.267 0.733 51 H 0.070 0.930 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.931 -7.675 -32.798 33.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.357 5.357 3 C 0.309 3.691 4 O -0.466 6.466 5 C 0.072 3.928 6 C -0.208 4.208 7 C -0.199 4.199 8 N -0.343 5.343 9 C -0.020 4.020 10 C -0.151 4.151 11 C -0.103 4.103 12 C -0.129 4.129 13 C -0.091 4.091 14 N -0.263 5.263 15 C -0.052 4.052 16 C -0.039 4.039 17 C -0.571 4.571 18 H 0.052 0.948 19 C -0.189 4.189 20 N -0.590 5.590 21 Si 0.772 3.228 22 H -0.184 1.184 23 H -0.210 1.210 24 H -0.178 1.178 25 C -0.064 4.064 26 C 0.309 3.691 27 O -0.420 6.420 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.244 0.756 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.140 0.860 39 H 0.099 0.901 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.080 0.920 43 H 0.131 0.869 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.053 0.947 47 H 0.070 0.930 48 H 0.030 0.970 49 H 0.044 0.956 50 H 0.076 0.924 51 H 0.088 0.912 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.298 -6.660 -32.709 33.459 hybrid contribution 0.081 -0.230 1.127 1.153 sum 2.380 -6.889 -31.582 32.413 Atomic orbital electron populations 1.21450 0.79471 1.03430 1.00444 1.45467 1.07969 1.08256 1.74016 1.20644 0.90250 0.83660 0.74513 1.90660 1.70975 1.33248 1.51732 1.20703 0.89940 0.97316 0.84798 1.22197 1.03891 0.98830 0.95908 1.21971 1.02549 0.92971 1.02429 1.48613 1.09585 1.64797 1.11291 1.22449 0.80566 1.00521 0.98449 1.22842 0.93399 1.02042 0.96805 1.21483 0.98458 0.97066 0.93314 1.22385 1.00721 0.96625 0.93194 1.23275 1.00947 0.88222 0.96672 1.64852 1.52080 1.07691 1.01681 1.21989 0.95102 0.99043 0.89046 1.19472 0.95970 0.95935 0.92520 1.21388 1.21960 1.20897 0.92853 0.94780 1.25954 0.98387 0.99557 0.95015 1.70058 1.44432 1.44698 0.99792 0.85669 0.79732 0.79536 0.77820 1.18350 1.21024 1.17782 1.22596 0.98414 0.96462 0.88928 1.20782 0.86470 0.76854 0.85000 1.90760 1.15310 1.54259 1.81677 0.95270 0.92685 0.87783 0.75637 0.90045 0.87754 0.90483 0.94916 0.88348 0.90752 0.85984 0.90061 0.86797 0.87952 0.91996 0.86921 0.92391 0.91200 0.94731 0.92970 0.96957 0.95584 0.92401 0.91185 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.94 10.67 127.77 1.36 3.30 16 2 N -0.71 -14.15 4.03 -484.54 -1.95 -16.10 16 3 C 0.52 13.04 4.50 87.66 0.39 13.44 16 4 O -0.59 -20.55 15.99 -3.03 -0.05 -20.60 16 5 C 0.16 2.55 1.07 2.86 0.00 2.55 16 6 C -0.15 -0.94 8.16 71.98 0.59 -0.35 16 7 C -0.14 -2.32 7.95 71.98 0.57 -1.75 16 8 N -0.61 -9.58 2.77 -775.20 -2.15 -11.73 16 9 C 0.10 0.78 6.81 86.89 0.59 1.38 16 10 C -0.11 -1.15 6.24 31.39 0.20 -0.95 16 11 C -0.10 -2.05 0.77 -52.66 -0.04 -2.09 16 12 C -0.09 -2.00 6.20 31.54 0.20 -1.80 16 13 C 0.04 1.05 5.12 86.71 0.44 1.50 16 14 N -0.54 -18.86 5.41 -883.51 -4.78 -23.63 16 15 C 0.08 3.12 4.97 86.30 0.43 3.54 16 16 C 0.00 -0.06 3.70 29.85 0.11 0.05 16 17 C -0.53 -31.15 9.66 25.60 0.25 -30.90 16 18 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 19 C 0.01 0.47 5.47 84.65 0.46 0.93 16 20 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 21 Si 0.95 44.97 27.47 68.60 1.88 46.85 16 22 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 24 H -0.25 -11.57 6.54 99.48 0.65 -10.92 16 25 C 0.06 1.80 6.06 86.05 0.52 2.32 16 26 C 0.52 12.53 6.34 87.52 0.55 13.08 16 27 O -0.54 -18.14 13.69 -3.03 -0.04 -18.18 16 28 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.41 5.64 7.79 -92.70 -0.72 4.92 16 32 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.10 0.11 7.09 -2.39 -0.02 0.09 16 34 H 0.08 0.33 7.18 -2.39 -0.02 0.31 16 35 H 0.03 0.78 8.04 -2.39 -0.02 0.76 16 36 H 0.10 0.94 8.08 -2.39 -0.02 0.92 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.12 0.06 6.92 -2.39 -0.02 0.05 16 39 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.11 0.62 7.50 -2.39 -0.02 0.60 16 41 H 0.10 0.97 7.41 -2.39 -0.02 0.96 16 42 H 0.06 1.65 7.54 -2.38 -0.02 1.64 16 43 H 0.11 1.61 7.44 -2.39 -0.02 1.59 16 44 H 0.06 1.58 7.98 -2.38 -0.02 1.56 16 45 H 0.07 2.22 7.69 -2.39 -0.02 2.20 16 46 H 0.03 1.36 7.82 -2.38 -0.02 1.34 16 47 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.01 0.61 7.20 -2.39 -0.02 0.60 16 49 H 0.03 1.18 6.22 -2.39 -0.01 1.17 16 50 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 51 H 0.07 1.72 6.73 -2.38 -0.02 1.70 16 52 H 0.05 1.62 7.73 -2.39 -0.02 1.61 16 Total: -1.00 -86.28 397.41 -0.03 -86.31 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.13 Total: 12.48 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 6.63 Total: 4.25 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -8.58 Total: -111.11 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.09 Total: -38.78 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.85 kcal Total: -86.28 -0.03 -86.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040205.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.054 kcal (2) G-P(sol) polarization free energy of solvation -86.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds