Wall clock time and date at job start Tue Mar 31 2020 19:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 119.99607 * 2 1 4 4 O 1.21282 * 120.00220 * 355.30378 * 3 2 1 5 5 C 1.50705 * 120.00013 * 175.30822 * 3 2 1 6 6 C 1.52997 * 109.47172 * 154.81901 * 5 3 2 7 7 C 1.52999 * 109.47356 * 274.82193 * 5 3 2 8 8 N 1.46502 * 109.47098 * 34.82025 * 5 3 2 9 9 C 1.46882 * 124.37302 * 242.87015 * 8 5 3 10 10 C 1.54700 * 105.51933 * 196.82233 * 9 8 5 11 11 C 1.53613 * 101.51473 * 335.47321 * 10 9 8 12 12 C 1.53604 * 110.85513 * 263.09508 * 11 10 9 13 13 C 1.55170 * 102.66206 * 217.72837 * 12 11 10 14 14 N 1.48628 * 103.35880 * 36.57806 * 13 12 11 15 15 C 1.46904 * 110.99569 * 200.85303 * 14 13 12 16 16 C 1.53011 * 109.46660 * 287.44374 * 15 14 13 17 17 C 1.50704 * 109.46658 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00038 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99799 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00258 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00048 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47139 * 90.00340 * 21 19 17 23 23 H 1.48495 * 109.47469 * 210.00254 * 21 19 17 24 24 H 1.48507 * 109.47178 * 330.00270 * 21 19 17 25 25 C 1.48180 * 105.86183 * 321.38892 * 14 13 12 26 26 C 1.34753 * 124.37234 * 62.56730 * 8 5 3 27 27 O 1.21280 * 125.12870 * 358.96580 * 26 8 5 28 28 H 1.09001 * 109.47066 * 299.99617 * 1 2 3 29 29 H 1.08996 * 109.47282 * 60.00467 * 1 2 3 30 30 H 1.09006 * 109.46806 * 180.02562 * 1 2 3 31 31 H 0.96999 * 120.00682 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47390 * 59.99840 * 6 5 3 33 33 H 1.09000 * 109.47164 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.47421 * 299.99796 * 6 5 3 35 35 H 1.08997 * 109.47260 * 59.99304 * 7 5 3 36 36 H 1.08991 * 109.47720 * 179.97438 * 7 5 3 37 37 H 1.09008 * 109.46731 * 300.00291 * 7 5 3 38 38 H 1.08997 * 110.23283 * 315.84132 * 9 8 5 39 39 H 1.09000 * 110.23316 * 77.72548 * 9 8 5 40 40 H 1.09004 * 111.01837 * 93.53632 * 10 9 8 41 41 H 1.09003 * 111.01436 * 217.37353 * 10 9 8 42 42 H 1.09004 * 110.77609 * 336.02132 * 12 11 10 43 43 H 1.09002 * 110.77483 * 99.43624 * 12 11 10 44 44 H 1.09000 * 110.63986 * 278.10746 * 13 12 11 45 45 H 1.09005 * 110.77933 * 155.11127 * 13 12 11 46 46 H 1.08995 * 109.47246 * 47.44282 * 15 14 13 47 47 H 1.08998 * 109.47204 * 167.44866 * 15 14 13 48 48 H 1.08995 * 109.47216 * 299.99927 * 16 15 14 49 49 H 1.08998 * 109.46910 * 60.00312 * 16 15 14 50 50 H 0.97000 * 120.00561 * 180.02562 * 20 19 17 51 51 H 1.09002 * 110.01731 * 265.82266 * 25 14 13 52 52 H 1.08996 * 110.06338 * 144.44757 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5354 2.2158 -0.0860 5 6 3.6420 1.1695 0.1068 6 6 4.1960 2.4495 -0.5222 7 6 4.0488 1.1079 1.5804 8 7 4.1834 0.0051 -0.5983 9 6 4.9390 -1.0772 0.0462 10 6 5.6563 -1.8230 -1.1038 11 6 4.7515 -1.4869 -2.2988 12 6 3.7498 -2.6212 -2.5623 13 6 3.6774 -2.6578 -4.1119 14 7 5.0731 -2.3612 -4.5280 15 6 5.1168 -1.8709 -5.9121 16 6 4.8413 -3.0298 -6.8725 17 6 4.8867 -2.5269 -8.2925 18 1 5.0920 -1.4852 -8.4901 19 6 4.6673 -3.3970 -9.3392 20 7 4.4178 -4.6657 -9.0986 21 14 4.7243 -2.7739 -11.0993 22 1 6.1101 -2.8888 -11.6204 23 1 3.8098 -3.5858 -11.9417 24 1 4.2983 -1.3517 -11.1350 25 6 5.5670 -1.3314 -3.5840 26 6 4.0476 -0.2144 -1.9209 27 8 3.4496 0.5076 -2.6903 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9501 -0.8400 -0.0004 32 1 3.7932 3.3159 0.0023 33 1 5.2833 2.4509 -0.4454 34 1 3.9063 2.4934 -1.5721 35 1 3.6541 0.1961 2.0285 36 1 5.1360 1.1091 1.6576 37 1 3.6459 1.9744 2.1050 38 1 5.6697 -0.6645 0.7417 39 1 4.2604 -1.7512 0.5690 40 1 6.6633 -1.4336 -1.2541 41 1 5.6785 -2.8970 -0.9193 42 1 4.1246 -3.5668 -2.1704 43 1 2.7755 -2.3835 -2.1353 44 1 2.9950 -1.8930 -4.4828 45 1 3.3736 -3.6445 -4.4616 46 1 4.3598 -1.0986 -6.0480 47 1 6.1024 -1.4541 -6.1190 48 1 5.5983 -3.8021 -6.7366 49 1 3.8556 -3.4466 -6.6656 50 1 4.2638 -5.2779 -9.8350 51 1 5.4155 -0.3370 -4.0039 52 1 6.6250 -1.4912 -3.3762 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040207.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:38 Heat of formation + Delta-G solvation = -60.602168 kcal Electronic energy + Delta-G solvation = -31270.278850 eV Core-core repulsion = 27269.718825 eV Total energy + Delta-G solvation = -4000.560025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.71079 -39.93733 -37.89060 -36.80096 -35.10417 -34.85614 -33.23300 -31.61378 -29.82470 -28.93390 -28.41273 -27.68506 -27.16044 -24.72751 -23.63073 -23.17768 -21.79608 -21.73876 -20.04972 -19.94337 -19.21435 -17.98768 -16.69982 -16.39512 -16.14749 -15.66086 -15.48665 -15.40601 -15.03474 -14.67523 -14.44543 -14.38968 -14.20238 -13.84182 -13.49363 -13.45628 -13.13271 -12.89593 -12.79904 -12.63803 -12.56587 -12.42678 -12.34591 -12.24563 -12.14851 -11.93720 -11.75087 -11.47847 -11.29655 -11.03806 -10.98020 -10.82328 -10.69105 -10.47941 -10.34448 -9.78422 -9.68793 -9.42025 -9.33475 -9.08614 -8.99385 -8.30106 -7.84536 -5.96080 -3.98019 2.13372 2.34402 2.68581 2.91839 3.35058 3.40951 3.45148 3.95052 4.14187 4.26229 4.37458 4.39118 4.44877 4.52921 4.58693 4.82435 4.85664 4.91727 4.94474 5.03927 5.09196 5.21543 5.22343 5.39267 5.40224 5.42364 5.44017 5.50927 5.55480 5.57834 5.60460 5.65567 5.77800 5.88222 5.98316 6.00584 6.10465 6.13142 6.22047 6.27006 6.41016 6.52464 6.75406 7.00035 7.13674 7.38423 7.47349 7.79557 7.88490 7.92808 7.99789 8.11158 8.47792 9.09177 9.65471 11.15342 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.002617 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.049050 B =10696.827939 C =11047.034010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.729 5.729 3 C 0.517 3.483 4 O -0.530 6.530 5 C 0.169 3.831 6 C -0.150 4.150 7 C -0.149 4.149 8 N -0.624 5.624 9 C 0.100 3.900 10 C -0.117 4.117 11 C -0.104 4.104 12 C -0.097 4.097 13 C 0.040 3.960 14 N -0.510 5.510 15 C 0.053 3.947 16 C 0.032 3.968 17 C -0.521 4.521 18 H 0.053 0.947 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.056 3.944 26 C 0.531 3.469 27 O -0.503 6.503 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.400 0.600 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.025 0.975 47 H 0.060 0.940 48 H 0.024 0.976 49 H 0.015 0.985 50 H 0.260 0.740 51 H 0.049 0.951 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 5.943 28.211 28.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.380 5.380 3 C 0.302 3.698 4 O -0.405 6.405 5 C 0.082 3.918 6 C -0.208 4.208 7 C -0.206 4.206 8 N -0.362 5.362 9 C -0.023 4.023 10 C -0.154 4.154 11 C -0.108 4.108 12 C -0.136 4.136 13 C -0.088 4.088 14 N -0.235 5.235 15 C -0.074 4.074 16 C -0.005 4.005 17 C -0.560 4.560 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.719 3.281 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.073 4.073 26 C 0.318 3.682 27 O -0.376 6.376 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.233 0.767 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.043 0.957 47 H 0.078 0.922 48 H 0.042 0.958 49 H 0.034 0.966 50 H 0.069 0.931 51 H 0.068 0.932 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.707 6.557 27.690 28.464 hybrid contribution -0.309 0.580 -1.091 1.274 sum -1.015 7.137 26.599 27.558 Atomic orbital electron populations 1.21561 0.79366 1.02370 1.02392 1.45715 1.07825 1.08779 1.75662 1.20758 0.89742 0.83839 0.75502 1.90710 1.69798 1.31479 1.48523 1.20544 0.89508 0.87366 0.94407 1.22031 1.00769 0.94805 1.03195 1.22047 1.03150 1.03699 0.91748 1.48702 1.56545 1.22261 1.08689 1.22222 0.95306 0.88410 0.96340 1.22701 0.98695 1.01938 0.92106 1.21566 0.97326 0.94378 0.97542 1.22390 0.97024 0.96486 0.97680 1.23256 0.90843 1.02178 0.92561 1.65047 1.17905 1.37100 1.03401 1.22531 0.99731 0.98951 0.86170 1.19019 0.97235 0.92567 0.91707 1.21215 1.48241 0.95158 0.91380 0.92831 1.24980 0.95337 0.94871 0.99098 1.69971 1.48669 1.03065 1.31633 0.86607 0.77864 0.78831 0.84779 1.20649 1.21237 1.19914 1.22710 0.98563 0.95897 0.90104 1.20610 0.79606 0.86583 0.81415 1.90770 1.41687 1.51054 1.54067 0.92223 0.91976 0.90571 0.76662 0.90332 0.91448 0.90455 0.91346 0.90194 0.90146 0.89927 0.91065 0.89497 0.88402 0.89413 0.91710 0.93564 0.89375 0.95664 0.92179 0.95751 0.96644 0.93054 0.93244 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 10.71 59.85 0.64 1.39 16 2 N -0.73 -7.14 5.61 -67.08 -0.38 -7.52 16 3 C 0.52 6.31 6.03 -10.98 -0.07 6.25 16 4 O -0.53 -8.44 16.10 5.56 0.09 -8.35 16 5 C 0.17 1.60 1.04 -132.97 -0.14 1.47 16 6 C -0.15 -1.62 7.98 37.16 0.30 -1.32 16 7 C -0.15 -0.84 7.50 37.16 0.28 -0.56 16 8 N -0.62 -5.64 2.02 -158.95 -0.32 -5.96 16 9 C 0.10 0.54 6.22 -2.94 -0.02 0.52 16 10 C -0.12 -0.81 6.19 -25.52 -0.16 -0.97 16 11 C -0.10 -1.19 0.77 -155.25 -0.12 -1.31 16 12 C -0.10 -1.14 6.21 -25.27 -0.16 -1.30 16 13 C 0.04 0.66 5.92 -1.72 -0.01 0.65 16 14 N -0.51 -9.29 5.26 -230.60 -1.21 -10.51 16 15 C 0.05 1.18 4.65 -3.82 -0.02 1.16 16 16 C 0.03 0.86 5.06 -27.88 -0.14 0.71 16 17 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 21 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.06 0.83 5.99 -3.12 -0.02 0.81 16 26 C 0.53 6.85 5.96 -11.22 -0.07 6.78 16 27 O -0.50 -8.92 15.52 5.56 0.09 -8.83 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.40 3.15 8.12 -40.82 -0.33 2.81 16 32 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.11 6.66 -51.93 -0.35 0.76 16 35 H 0.07 0.30 7.89 -51.93 -0.41 -0.11 16 36 H 0.08 0.32 7.33 -51.93 -0.38 -0.06 16 37 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.08 0.29 6.95 -51.93 -0.36 -0.07 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 0.57 7.59 -51.93 -0.39 0.18 16 41 H 0.10 0.55 7.45 -51.93 -0.39 0.17 16 42 H 0.09 0.86 7.46 -51.93 -0.39 0.48 16 43 H 0.06 0.69 7.84 -51.93 -0.41 0.29 16 44 H 0.05 0.87 7.80 -51.93 -0.41 0.46 16 45 H 0.09 1.53 7.82 -51.93 -0.41 1.13 16 46 H 0.03 0.58 7.83 -51.93 -0.41 0.17 16 47 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 48 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.02 0.43 7.38 -51.93 -0.38 0.04 16 50 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.05 0.84 7.09 -51.93 -0.37 0.47 16 52 H 0.08 1.08 7.40 -51.93 -0.38 0.70 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -36.71 405.06 -9.11 -45.81 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -9.09 Total: -1.79 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -0.11 Total: 0.43 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -1.17 Total: -50.47 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.18 Total: -17.19 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.71 -9.11 -45.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040207.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.789 kcal (2) G-P(sol) polarization free energy of solvation -36.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds