Wall clock time and date at job start Tue Mar 31 2020 19:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 119.99607 * 2 1 4 4 O 1.21282 * 120.00220 * 355.30378 * 3 2 1 5 5 C 1.50705 * 120.00013 * 175.30822 * 3 2 1 6 6 C 1.52997 * 109.47172 * 154.81901 * 5 3 2 7 7 C 1.52999 * 109.47356 * 274.82193 * 5 3 2 8 8 N 1.46502 * 109.47098 * 34.82025 * 5 3 2 9 9 C 1.46882 * 124.37302 * 242.87015 * 8 5 3 10 10 C 1.54700 * 105.51933 * 196.82233 * 9 8 5 11 11 C 1.53613 * 101.51473 * 335.47321 * 10 9 8 12 12 C 1.53604 * 110.85513 * 263.09508 * 11 10 9 13 13 C 1.55170 * 102.66206 * 217.72837 * 12 11 10 14 14 N 1.48628 * 103.35880 * 36.57806 * 13 12 11 15 15 C 1.46904 * 110.99569 * 200.85303 * 14 13 12 16 16 C 1.53011 * 109.46660 * 287.44374 * 15 14 13 17 17 C 1.50704 * 109.46658 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00038 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99799 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00258 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00048 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47139 * 90.00340 * 21 19 17 23 23 H 1.48495 * 109.47469 * 210.00254 * 21 19 17 24 24 H 1.48507 * 109.47178 * 330.00270 * 21 19 17 25 25 C 1.48180 * 105.86183 * 321.38892 * 14 13 12 26 26 C 1.34753 * 124.37234 * 62.56730 * 8 5 3 27 27 O 1.21280 * 125.12870 * 358.96580 * 26 8 5 28 28 H 1.09001 * 109.47066 * 299.99617 * 1 2 3 29 29 H 1.08996 * 109.47282 * 60.00467 * 1 2 3 30 30 H 1.09006 * 109.46806 * 180.02562 * 1 2 3 31 31 H 0.96999 * 120.00682 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47390 * 59.99840 * 6 5 3 33 33 H 1.09000 * 109.47164 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.47421 * 299.99796 * 6 5 3 35 35 H 1.08997 * 109.47260 * 59.99304 * 7 5 3 36 36 H 1.08991 * 109.47720 * 179.97438 * 7 5 3 37 37 H 1.09008 * 109.46731 * 300.00291 * 7 5 3 38 38 H 1.08997 * 110.23283 * 315.84132 * 9 8 5 39 39 H 1.09000 * 110.23316 * 77.72548 * 9 8 5 40 40 H 1.09004 * 111.01837 * 93.53632 * 10 9 8 41 41 H 1.09003 * 111.01436 * 217.37353 * 10 9 8 42 42 H 1.09004 * 110.77609 * 336.02132 * 12 11 10 43 43 H 1.09002 * 110.77483 * 99.43624 * 12 11 10 44 44 H 1.09000 * 110.63986 * 278.10746 * 13 12 11 45 45 H 1.09005 * 110.77933 * 155.11127 * 13 12 11 46 46 H 1.08995 * 109.47246 * 47.44282 * 15 14 13 47 47 H 1.08998 * 109.47204 * 167.44866 * 15 14 13 48 48 H 1.08995 * 109.47216 * 299.99927 * 16 15 14 49 49 H 1.08998 * 109.46910 * 60.00312 * 16 15 14 50 50 H 0.97000 * 120.00561 * 180.02562 * 20 19 17 51 51 H 1.09002 * 110.01731 * 265.82266 * 25 14 13 52 52 H 1.08996 * 110.06338 * 144.44757 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5354 2.2158 -0.0860 5 6 3.6420 1.1695 0.1068 6 6 4.1960 2.4495 -0.5222 7 6 4.0488 1.1079 1.5804 8 7 4.1834 0.0051 -0.5983 9 6 4.9390 -1.0772 0.0462 10 6 5.6563 -1.8230 -1.1038 11 6 4.7515 -1.4869 -2.2988 12 6 3.7498 -2.6212 -2.5623 13 6 3.6774 -2.6578 -4.1119 14 7 5.0731 -2.3612 -4.5280 15 6 5.1168 -1.8709 -5.9121 16 6 4.8413 -3.0298 -6.8725 17 6 4.8867 -2.5269 -8.2925 18 1 5.0920 -1.4852 -8.4901 19 6 4.6673 -3.3970 -9.3392 20 7 4.4178 -4.6657 -9.0986 21 14 4.7243 -2.7739 -11.0993 22 1 6.1101 -2.8888 -11.6204 23 1 3.8098 -3.5858 -11.9417 24 1 4.2983 -1.3517 -11.1350 25 6 5.5670 -1.3314 -3.5840 26 6 4.0476 -0.2144 -1.9209 27 8 3.4496 0.5076 -2.6903 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9501 -0.8400 -0.0004 32 1 3.7932 3.3159 0.0023 33 1 5.2833 2.4509 -0.4454 34 1 3.9063 2.4934 -1.5721 35 1 3.6541 0.1961 2.0285 36 1 5.1360 1.1091 1.6576 37 1 3.6459 1.9744 2.1050 38 1 5.6697 -0.6645 0.7417 39 1 4.2604 -1.7512 0.5690 40 1 6.6633 -1.4336 -1.2541 41 1 5.6785 -2.8970 -0.9193 42 1 4.1246 -3.5668 -2.1704 43 1 2.7755 -2.3835 -2.1353 44 1 2.9950 -1.8930 -4.4828 45 1 3.3736 -3.6445 -4.4616 46 1 4.3598 -1.0986 -6.0480 47 1 6.1024 -1.4541 -6.1190 48 1 5.5983 -3.8021 -6.7366 49 1 3.8556 -3.4466 -6.6656 50 1 4.2638 -5.2779 -9.8350 51 1 5.4155 -0.3370 -4.0039 52 1 6.6250 -1.4912 -3.3762 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040207.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:37 Heat of formation + Delta-G solvation = -88.918790 kcal Electronic energy + Delta-G solvation = -31271.506751 eV Core-core repulsion = 27269.718825 eV Total energy + Delta-G solvation = -4001.787926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.58918 -40.90911 -39.12139 -37.75620 -36.23373 -35.78704 -35.08695 -33.10705 -30.83271 -30.44611 -29.33337 -28.52130 -27.90023 -26.52244 -24.51361 -24.14575 -23.44422 -22.50418 -21.65378 -20.92137 -20.13305 -18.83933 -18.59746 -17.48520 -17.15461 -16.72250 -16.48993 -16.37823 -16.26748 -16.10589 -15.83712 -15.46284 -15.21827 -14.91669 -14.67346 -14.48442 -14.16786 -14.09812 -13.79025 -13.62029 -13.57693 -13.39175 -13.28649 -13.12147 -13.07937 -12.99982 -12.90301 -12.80948 -12.68509 -12.49288 -12.40289 -12.30496 -12.00235 -11.76834 -11.60948 -11.37694 -11.24162 -11.18942 -10.67216 -10.57320 -10.27927 -9.76427 -9.41119 -8.22832 -6.34208 1.28844 1.36791 1.37334 1.38933 1.50015 1.87808 2.15822 2.37943 3.01918 3.09955 3.30922 3.38079 3.50897 3.56340 3.74356 3.84853 3.92657 4.01861 4.28549 4.30847 4.32811 4.42546 4.44841 4.49123 4.52165 4.57701 4.60133 4.68083 4.69267 4.74704 4.77988 4.80190 4.82406 4.88997 4.94776 5.02530 5.07860 5.09373 5.15036 5.20380 5.24183 5.30952 5.40724 5.50599 5.59180 5.73556 5.95067 5.99645 6.05921 6.26627 6.35267 6.81347 7.02070 7.10331 7.34496 8.89219 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.002617 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.049050 B =10696.827939 C =11047.034010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.720 5.720 3 C 0.506 3.494 4 O -0.580 6.580 5 C 0.169 3.831 6 C -0.148 4.148 7 C -0.142 4.142 8 N -0.609 5.609 9 C 0.094 3.906 10 C -0.107 4.107 11 C -0.101 4.101 12 C -0.082 4.082 13 C 0.032 3.968 14 N -0.514 5.514 15 C 0.071 3.929 16 C 0.045 3.955 17 C -0.550 4.550 18 H 0.053 0.947 19 C 0.005 3.995 20 N -0.928 5.928 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.269 1.269 25 C 0.055 3.945 26 C 0.523 3.477 27 O -0.566 6.566 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.110 0.890 31 H 0.411 0.589 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.031 0.969 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.077 0.923 44 H 0.012 0.988 45 H 0.074 0.926 46 H 0.004 0.996 47 H 0.062 0.938 48 H 0.001 0.999 49 H -0.010 1.010 50 H 0.265 0.735 51 H 0.019 0.981 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.531 4.645 31.299 31.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.371 5.371 3 C 0.291 3.709 4 O -0.459 6.459 5 C 0.082 3.918 6 C -0.206 4.206 7 C -0.199 4.199 8 N -0.345 5.345 9 C -0.026 4.026 10 C -0.145 4.145 11 C -0.105 4.105 12 C -0.120 4.120 13 C -0.096 4.096 14 N -0.237 5.237 15 C -0.057 4.057 16 C 0.007 3.993 17 C -0.589 4.589 18 H 0.071 0.929 19 C -0.193 4.193 20 N -0.567 5.567 21 Si 0.789 3.211 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.194 1.194 25 C -0.074 4.074 26 C 0.311 3.689 27 O -0.443 6.443 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.128 0.872 31 H 0.247 0.753 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.051 0.949 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.135 0.865 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.096 0.904 44 H 0.031 0.969 45 H 0.092 0.908 46 H 0.022 0.978 47 H 0.080 0.920 48 H 0.019 0.981 49 H 0.009 0.991 50 H 0.074 0.926 51 H 0.037 0.963 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.019 5.203 30.847 31.299 hybrid contribution -0.868 0.969 -2.059 2.436 sum 0.150 6.172 28.788 29.442 Atomic orbital electron populations 1.21669 0.78890 1.04231 1.01250 1.45720 1.08363 1.08708 1.74308 1.21387 0.91140 0.83689 0.74638 1.90680 1.71029 1.33249 1.50959 1.20587 0.87619 0.86684 0.96904 1.21991 1.02121 0.96044 1.00433 1.22097 1.04920 1.04835 0.88084 1.48721 1.55551 1.22741 1.07495 1.22675 0.96315 0.87574 0.96048 1.22783 0.98062 1.03944 0.89665 1.21537 0.97612 0.93608 0.97770 1.22384 0.98265 0.98244 0.93101 1.23279 0.89333 1.00103 0.96865 1.64968 1.18903 1.38000 1.01857 1.22129 0.98923 0.96447 0.88208 1.18802 0.94905 0.93233 0.92337 1.21611 1.48948 0.95406 0.92912 0.92894 1.25918 0.94484 0.94990 1.03953 1.70090 1.48984 1.04308 1.33342 0.85457 0.78521 0.78362 0.78760 1.19287 1.20314 1.19389 1.22812 1.00409 0.93210 0.90938 1.20931 0.79059 0.86522 0.82408 1.90752 1.44458 1.53047 1.56081 0.91705 0.94841 0.87174 0.75274 0.90558 0.89275 0.94943 0.89043 0.87552 0.90398 0.86488 0.87665 0.88558 0.85727 0.86109 0.90401 0.96926 0.90764 0.97758 0.91989 0.98074 0.99136 0.92587 0.96271 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.39 10.71 127.77 1.37 2.76 16 2 N -0.72 -13.22 5.61 -484.52 -2.72 -15.94 16 3 C 0.51 12.23 6.03 87.66 0.53 12.76 16 4 O -0.58 -19.39 16.10 -3.04 -0.05 -19.44 16 5 C 0.17 2.91 1.04 2.86 0.00 2.91 16 6 C -0.15 -3.21 7.98 71.98 0.57 -2.63 16 7 C -0.14 -1.00 7.50 71.98 0.54 -0.46 16 8 N -0.61 -9.29 2.02 -775.19 -1.57 -10.86 16 9 C 0.09 0.45 6.22 86.89 0.54 0.99 16 10 C -0.11 -0.93 6.19 31.38 0.19 -0.74 16 11 C -0.10 -2.11 0.77 -52.66 -0.04 -2.15 16 12 C -0.08 -1.76 6.21 31.54 0.20 -1.56 16 13 C 0.03 1.12 5.92 86.71 0.51 1.64 16 14 N -0.51 -19.26 5.26 -883.49 -4.64 -23.90 16 15 C 0.07 3.33 4.65 86.31 0.40 3.73 16 16 C 0.04 2.51 5.06 29.85 0.15 2.66 16 17 C -0.55 -33.17 9.11 25.60 0.23 -32.94 16 18 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 19 C 0.00 0.29 5.46 84.65 0.46 0.75 16 20 N -0.93 -57.68 13.29 21.45 0.28 -57.39 16 21 Si 0.96 45.92 29.54 68.60 2.03 47.95 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 25 C 0.05 1.61 5.99 86.06 0.52 2.13 16 26 C 0.52 13.16 5.96 87.52 0.52 13.68 16 27 O -0.57 -21.34 15.52 -3.03 -0.05 -21.39 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.41 5.29 8.12 -92.71 -0.75 4.54 16 32 H 0.08 1.64 7.87 -2.39 -0.02 1.62 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.03 0.99 6.66 -2.39 -0.02 0.98 16 35 H 0.09 0.27 7.89 -2.39 -0.02 0.25 16 36 H 0.11 0.23 7.33 -2.39 -0.02 0.22 16 37 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.12 -0.07 6.95 -2.39 -0.02 -0.09 16 39 H 0.11 -0.06 8.14 -2.39 -0.02 -0.07 16 40 H 0.10 0.74 7.59 -2.39 -0.02 0.72 16 41 H 0.12 0.54 7.45 -2.39 -0.02 0.53 16 42 H 0.12 1.84 7.46 -2.38 -0.02 1.83 16 43 H 0.08 1.50 7.84 -2.39 -0.02 1.48 16 44 H 0.01 0.51 7.80 -2.39 -0.02 0.49 16 45 H 0.07 2.73 7.82 -2.38 -0.02 2.71 16 46 H 0.00 0.21 7.83 -2.39 -0.02 0.19 16 47 H 0.06 2.82 8.08 -2.39 -0.02 2.81 16 48 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 49 H -0.01 -0.59 7.38 -2.39 -0.02 -0.60 16 50 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 51 H 0.02 0.68 7.09 -2.39 -0.02 0.66 16 52 H 0.11 2.59 7.40 -2.39 -0.02 2.57 16 Total: -1.00 -89.50 405.06 0.14 -89.36 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.15 Total: 8.06 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 6.70 Total: 3.54 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -8.65 Total: -108.09 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.10 Total: -40.83 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -89.50 0.14 -89.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040207.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.444 kcal (2) G-P(sol) polarization free energy of solvation -89.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds