Wall clock time and date at job start Tue Mar 31 2020 19:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34783 * 120.00242 * 2 1 4 4 O 1.21279 * 119.99521 * 3.75714 * 3 2 1 5 5 C 1.50699 * 120.00151 * 183.75234 * 3 2 1 6 6 C 1.52993 * 109.47219 * 183.15359 * 5 3 2 7 7 C 1.53007 * 109.47003 * 63.15504 * 5 3 2 8 8 N 1.46498 * 109.47054 * 303.15701 * 5 3 2 9 9 C 1.33136 * 117.29729 * 172.30783 * 8 5 3 10 10 O 1.21281 * 118.53179 * 359.59731 * 9 8 5 11 11 C 1.50290 * 122.93891 * 179.57622 * 9 8 5 12 12 C 1.52986 * 109.26483 * 20.90808 * 11 9 8 13 13 C 1.52443 * 109.35977 * 308.40279 * 12 11 9 14 14 H 1.09005 * 110.74838 * 186.39364 * 13 12 11 15 15 C 1.45402 * 117.30231 * 352.28030 * 8 5 3 16 16 H 1.09004 * 111.48046 * 64.74941 * 15 8 5 17 17 C 1.55537 * 108.22634 * 301.51693 * 15 8 5 18 18 C 1.54451 * 102.74375 * 279.78787 * 17 15 8 19 19 N 1.47541 * 110.49374 * 308.55944 * 13 12 11 20 20 C 1.46896 * 111.00355 * 265.46875 * 19 13 12 21 21 C 1.53005 * 109.47165 * 56.38635 * 20 19 13 22 22 C 1.50699 * 109.47354 * 173.85685 * 21 20 19 23 23 H 1.07995 * 119.99728 * 359.97438 * 22 21 20 24 24 C 1.37878 * 120.00031 * 179.97438 * 22 21 20 25 25 N 1.31510 * 119.99661 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 119.99955 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47198 * 90.00299 * 26 24 22 28 28 H 1.48497 * 109.47410 * 210.00515 * 26 24 22 29 29 H 1.48506 * 109.47465 * 330.00417 * 26 24 22 30 30 H 1.09000 * 109.46991 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46714 * 300.00132 * 1 2 3 32 32 H 1.08995 * 109.46977 * 59.99868 * 1 2 3 33 33 H 0.96998 * 119.99943 * 180.02562 * 2 1 3 34 34 H 1.09002 * 109.47562 * 180.02562 * 6 5 3 35 35 H 1.09007 * 109.47027 * 300.00076 * 6 5 3 36 36 H 1.09002 * 109.47281 * 60.00342 * 6 5 3 37 37 H 1.09005 * 109.47008 * 301.61370 * 7 5 3 38 38 H 1.08994 * 109.46917 * 61.60606 * 7 5 3 39 39 H 1.08995 * 109.47038 * 181.61084 * 7 5 3 40 40 H 1.09003 * 109.50890 * 140.84338 * 11 9 8 41 41 H 1.09003 * 109.50656 * 260.92804 * 11 9 8 42 42 H 1.08999 * 109.49043 * 68.37984 * 12 11 9 43 43 H 1.08995 * 109.49009 * 188.44651 * 12 11 9 44 44 H 1.08999 * 110.75851 * 161.47111 * 17 15 8 45 45 H 1.08999 * 110.75716 * 38.10218 * 17 15 8 46 46 H 1.09007 * 109.92434 * 217.20496 * 18 17 15 47 47 H 1.08996 * 110.10249 * 95.97356 * 18 17 15 48 48 H 1.08996 * 109.47496 * 296.38088 * 20 19 13 49 49 H 1.09006 * 109.47005 * 176.38103 * 20 19 13 50 50 H 1.09000 * 109.47294 * 53.85205 * 21 20 19 51 51 H 1.09002 * 109.46778 * 293.85969 * 21 20 19 52 52 H 0.97000 * 120.00412 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5344 2.2164 0.0688 5 6 3.6435 1.1686 -0.0854 6 6 4.1585 2.6059 0.0120 7 6 4.0791 0.5601 -1.4200 8 7 4.1958 0.3762 1.0160 9 6 5.5063 0.1416 1.0022 10 8 6.1645 0.5849 0.0851 11 6 6.2065 -0.6476 2.0725 12 6 5.1863 -1.5219 2.8041 13 6 4.0140 -0.6591 3.2571 14 1 3.3278 -1.2351 3.8779 15 6 3.2677 -0.0885 2.0342 16 1 2.5437 -0.7922 1.6231 17 6 2.5712 1.1531 2.6608 18 6 3.6280 1.6667 3.6633 19 7 4.4976 0.5206 3.9997 20 6 4.4990 0.2678 5.4467 21 6 5.3445 -0.9716 5.7470 22 6 5.4708 -1.1441 7.2388 23 1 4.9959 -0.4400 7.9059 24 6 6.1926 -2.2009 7.7519 25 7 6.7713 -3.0580 6.9394 26 14 6.3497 -2.4144 9.6009 27 1 5.2336 -3.2582 10.0984 28 1 7.6444 -3.0703 9.9153 29 1 6.2961 -1.0843 10.2592 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.9499 -0.8400 -0.0004 34 1 5.2468 2.6070 -0.0502 35 1 3.7475 3.1955 -0.8076 36 1 3.8482 3.0395 0.9628 37 1 3.6879 -0.4541 -1.5018 38 1 3.6919 1.1660 -2.2391 39 1 5.1676 0.5349 -1.4697 40 1 6.9688 -1.2806 1.6181 41 1 6.6755 0.0356 2.7806 42 1 4.8264 -2.3008 2.1319 43 1 5.6574 -1.9805 3.6734 44 1 1.6567 0.8630 3.1781 45 1 2.3636 1.9048 1.8993 46 1 3.1370 2.0371 4.5633 47 1 4.2199 2.4614 3.2094 48 1 3.4771 0.1018 5.7876 49 1 4.9198 1.1291 5.9656 50 1 6.3356 -0.8499 5.3101 51 1 4.8643 -1.8514 5.3188 52 1 6.6900 -2.9469 5.9792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040478.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:53 Heat of formation + Delta-G solvation = -62.439204 kcal Electronic energy + Delta-G solvation = -32902.078016 eV Core-core repulsion = 28901.438331 eV Total energy + Delta-G solvation = -4000.639685 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.07069 -40.69594 -39.88555 -36.97074 -35.86235 -35.80900 -35.02132 -33.65232 -31.74092 -29.92837 -29.37846 -28.58120 -27.82743 -25.97432 -25.08106 -24.44989 -23.22369 -22.61468 -21.94835 -21.00630 -19.38015 -18.95324 -18.61440 -17.74299 -17.26087 -17.09876 -16.72504 -16.43270 -16.37730 -15.82116 -15.64206 -15.36622 -15.15562 -14.95431 -14.68667 -14.58409 -14.34414 -14.23214 -13.94714 -13.68702 -13.51892 -13.37286 -13.20433 -13.12765 -13.09512 -12.86574 -12.78299 -12.71975 -12.44736 -12.25764 -12.09912 -12.07604 -11.96886 -11.88560 -11.73398 -11.42194 -11.13687 -10.65113 -10.49271 -10.30721 -10.16368 -9.88092 -9.31494 -8.63098 -6.33112 1.13417 1.54180 1.60144 1.62340 1.79896 1.99443 2.04635 2.57119 2.90559 3.16655 3.21119 3.32341 3.43933 3.67078 3.84840 3.89316 3.92234 3.98641 4.09651 4.13817 4.32892 4.35688 4.42616 4.46658 4.48985 4.50661 4.62891 4.63951 4.67280 4.70436 4.75411 4.78221 4.80652 4.89962 4.90586 4.96561 4.98615 5.10957 5.15802 5.17664 5.23646 5.30330 5.33277 5.46609 5.49642 5.91698 6.02236 6.18290 6.26167 6.28804 6.37683 6.66070 6.99707 7.12922 7.46405 8.79002 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018713 B = 0.003427 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.908344 B = 8167.725948 C = 8713.923708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.720 5.720 3 C 0.530 3.470 4 O -0.558 6.558 5 C 0.150 3.850 6 C -0.140 4.140 7 C -0.166 4.166 8 N -0.574 5.574 9 C 0.539 3.461 10 O -0.571 6.571 11 C -0.115 4.115 12 C -0.111 4.111 13 C 0.072 3.928 14 H 0.070 0.930 15 C 0.135 3.865 16 H 0.128 0.872 17 C -0.164 4.164 18 C 0.047 3.953 19 N -0.529 5.529 20 C 0.081 3.919 21 C 0.025 3.975 22 C -0.623 4.623 23 H 0.043 0.957 24 C -0.031 4.031 25 N -0.934 5.934 26 Si 1.114 2.886 27 H -0.272 1.272 28 H -0.284 1.284 29 H -0.275 1.275 30 H 0.110 0.890 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.414 0.586 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.024 0.976 49 H 0.053 0.947 50 H -0.004 1.004 51 H 0.006 0.994 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.886 3.449 -16.455 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.373 5.373 3 C 0.316 3.684 4 O -0.436 6.436 5 C 0.063 3.937 6 C -0.198 4.198 7 C -0.224 4.224 8 N -0.307 5.307 9 C 0.330 3.670 10 O -0.452 6.452 11 C -0.155 4.155 12 C -0.149 4.149 13 C -0.037 4.037 14 H 0.088 0.912 15 C 0.030 3.970 16 H 0.145 0.855 17 C -0.202 4.202 18 C -0.081 4.081 19 N -0.254 5.254 20 C -0.047 4.047 21 C -0.012 4.012 22 C -0.661 4.661 23 H 0.062 0.938 24 C -0.229 4.229 25 N -0.572 5.572 26 Si 0.936 3.064 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.200 1.200 30 H 0.129 0.871 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.252 0.748 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.111 0.889 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.042 0.958 49 H 0.072 0.928 50 H 0.014 0.986 51 H 0.024 0.976 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.853 3.562 -15.832 20.095 hybrid contribution -1.008 0.677 -0.516 1.319 sum -12.861 4.239 -16.347 21.228 Atomic orbital electron populations 1.21761 0.77868 1.04541 1.01983 1.46108 1.08920 1.08222 1.74069 1.20252 0.89121 0.84250 0.74779 1.90722 1.70188 1.32454 1.50249 1.20748 0.89562 0.93786 0.89652 1.21935 1.01878 0.93499 1.02519 1.22374 1.05835 1.01013 0.93146 1.47076 1.07116 1.52839 1.23710 1.20100 0.81214 0.79463 0.86222 1.90551 1.64246 1.53605 1.36825 1.21402 0.98716 0.99158 0.96219 1.21530 0.95290 0.97294 1.00758 1.22421 0.95901 0.92403 0.92984 0.91174 1.22477 0.90871 0.96325 0.87290 0.85501 1.23683 0.98442 0.98408 0.99712 1.22794 0.93096 0.93985 0.98226 1.63647 1.50601 1.04114 1.06993 1.22040 0.97613 0.98524 0.86496 1.19171 0.94217 0.92839 0.94963 1.22483 1.36206 1.13885 0.93525 0.93842 1.27167 0.92646 0.92571 1.10543 1.70878 1.43538 1.37849 1.04913 0.82961 0.77112 0.76560 0.69760 1.19793 1.20992 1.19983 0.87138 0.92670 0.92461 0.74838 0.91494 0.90794 0.92974 0.90795 0.90796 0.88759 0.88065 0.89261 0.88931 0.91741 0.89393 0.88850 0.92542 0.91751 0.95799 0.92816 0.98606 0.97569 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.71 127.77 1.37 2.19 16 2 N -0.72 -9.60 4.18 -484.53 -2.03 -11.63 16 3 C 0.53 10.88 3.69 87.66 0.32 11.20 16 4 O -0.56 -15.00 14.68 -3.02 -0.04 -15.04 16 5 C 0.15 3.31 0.52 2.86 0.00 3.31 16 6 C -0.14 -3.55 7.68 71.98 0.55 -3.00 16 7 C -0.17 -3.25 8.18 71.98 0.59 -2.66 16 8 N -0.57 -13.25 2.43 -753.53 -1.83 -15.09 16 9 C 0.54 15.11 6.85 87.78 0.60 15.71 16 10 O -0.57 -18.31 12.41 -3.03 -0.04 -18.35 16 11 C -0.12 -3.35 5.68 29.71 0.17 -3.18 16 12 C -0.11 -3.12 5.32 30.41 0.16 -2.96 16 13 C 0.07 1.97 2.00 45.02 0.09 2.06 16 14 H 0.07 2.02 7.44 -2.38 -0.02 2.01 16 15 C 0.13 2.85 2.73 46.48 0.13 2.98 16 16 H 0.13 1.91 5.37 -2.38 -0.01 1.90 16 17 C -0.16 -3.78 5.67 31.96 0.18 -3.60 16 18 C 0.05 1.32 6.82 86.63 0.59 1.91 16 19 N -0.53 -17.16 4.04 -862.79 -3.48 -20.64 16 20 C 0.08 3.21 4.50 86.31 0.39 3.60 16 21 C 0.03 1.22 2.80 29.85 0.08 1.30 16 22 C -0.62 -34.31 9.11 25.60 0.23 -34.08 16 23 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 24 C -0.03 -1.72 5.46 84.66 0.46 -1.26 16 25 N -0.93 -55.51 13.65 21.45 0.29 -55.22 16 26 Si 1.11 49.30 29.90 68.60 2.05 51.35 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 29 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 30 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.41 3.92 6.96 -92.71 -0.65 3.27 16 34 H 0.07 1.90 6.49 -2.39 -0.02 1.88 16 35 H 0.07 1.75 8.07 -2.38 -0.02 1.73 16 36 H 0.05 1.41 6.95 -2.39 -0.02 1.39 16 37 H 0.07 1.14 7.83 -2.38 -0.02 1.12 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 2.32 5.26 -2.39 -0.01 2.31 16 40 H 0.10 2.72 8.14 -2.39 -0.02 2.71 16 41 H 0.09 3.05 7.75 -2.39 -0.02 3.03 16 42 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.06 2.29 5.32 -2.39 -0.01 2.28 16 44 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.09 2.34 3.26 -2.39 -0.01 2.33 16 46 H 0.06 1.58 7.59 -2.38 -0.02 1.56 16 47 H 0.06 1.92 7.95 -2.39 -0.02 1.90 16 48 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 50 H 0.00 -0.23 7.64 -2.39 -0.02 -0.25 16 51 H 0.01 0.30 5.85 -2.39 -0.01 0.29 16 52 H 0.26 15.37 7.22 -92.71 -0.67 14.70 16 Total: -1.00 -68.94 378.29 1.23 -67.71 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.39 Total: 23.38 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.92 Total: -6.48 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -7.05 Total: -102.57 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.08 Total: -33.39 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 2.05 Total: 51.35 kcal Total: -68.94 1.23 -67.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040478.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.272 kcal (2) G-P(sol) polarization free energy of solvation -68.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds