Wall clock time and date at job start Tue Mar 31 2020 20:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47519 * 2 1 4 4 H 1.08997 * 109.47151 * 54.99965 * 3 2 1 5 5 C 1.53003 * 109.47040 * 295.00006 * 3 2 1 6 6 C 1.53000 * 109.47262 * 174.99873 * 3 2 1 7 7 H 1.09004 * 109.47039 * 180.02562 * 6 3 2 8 8 N 1.46497 * 109.47095 * 59.99934 * 6 3 2 9 9 C 1.34785 * 119.99722 * 85.00296 * 8 6 3 10 10 C 1.50701 * 119.99960 * 179.97438 * 9 8 6 11 11 O 1.21278 * 120.00029 * 359.97438 * 9 8 6 12 12 C 1.50698 * 109.47108 * 299.99748 * 6 3 2 13 13 O 1.21284 * 119.99730 * 120.00072 * 12 6 3 14 14 N 1.34768 * 120.00683 * 300.00224 * 12 6 3 15 15 C 1.46501 * 120.00704 * 179.97438 * 14 12 6 16 16 C 1.52996 * 109.47320 * 179.97438 * 15 14 12 17 17 H 1.09001 * 115.51882 * 29.58727 * 16 15 14 18 18 C 1.53003 * 117.44493 * 244.24222 * 16 15 14 19 19 H 1.09000 * 119.53267 * 4.11821 * 18 16 15 20 20 C 1.54384 * 118.12544 * 160.80841 * 18 16 15 21 21 N 1.48151 * 104.61519 * 87.19253 * 20 18 16 22 22 C 1.36937 * 127.84049 * 140.43791 * 21 20 18 23 23 H 1.07993 * 120.00126 * 195.56613 * 22 21 20 24 24 C 1.38818 * 119.99499 * 15.56336 * 22 21 20 25 25 N 1.31619 * 120.00314 * 9.09634 * 24 22 21 26 26 Si 1.86804 * 119.99719 * 189.09818 * 24 22 21 27 27 H 1.48502 * 109.47073 * 90.00040 * 26 24 22 28 28 H 1.48496 * 109.47272 * 210.00052 * 26 24 22 29 29 H 1.48500 * 109.47037 * 330.00030 * 26 24 22 30 30 C 1.48148 * 104.32351 * 320.41168 * 21 20 18 31 31 C 1.53001 * 117.43993 * 175.00124 * 16 15 14 32 32 H 1.08995 * 119.54445 * 355.88302 * 31 16 15 33 33 H 1.08993 * 109.47164 * 300.00099 * 1 2 3 34 34 H 1.09004 * 109.47260 * 59.99945 * 1 2 3 35 35 H 1.08998 * 109.47601 * 179.97438 * 1 2 3 36 36 H 1.09003 * 109.47110 * 239.99890 * 2 1 3 37 37 H 1.09004 * 109.46775 * 120.00266 * 2 1 3 38 38 H 1.08998 * 109.47216 * 60.00048 * 5 3 2 39 39 H 1.09004 * 109.47008 * 179.97438 * 5 3 2 40 40 H 1.08998 * 109.47075 * 299.99431 * 5 3 2 41 41 H 0.96992 * 120.00274 * 264.99716 * 8 6 3 42 42 H 1.08998 * 109.46880 * 59.99299 * 10 9 8 43 43 H 1.08997 * 109.46956 * 179.97438 * 10 9 8 44 44 H 1.08996 * 109.47019 * 300.00119 * 10 9 8 45 45 H 0.97012 * 119.99760 * 359.97438 * 14 12 6 46 46 H 1.08997 * 109.47250 * 300.00688 * 15 14 12 47 47 H 1.09007 * 109.46664 * 60.00002 * 15 14 12 48 48 H 1.08998 * 110.40800 * 205.97382 * 20 18 16 49 49 H 1.08994 * 110.40816 * 328.29427 * 20 18 16 50 50 H 0.96999 * 119.99513 * 180.02562 * 25 24 22 51 51 H 1.08994 * 110.40810 * 280.80377 * 30 21 20 52 52 H 1.09001 * 110.40782 * 158.36845 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4442 0.1258 7 1 3.9282 2.4719 0.1262 8 7 4.1490 0.7196 -1.0056 9 6 4.3735 1.3582 -2.1712 10 6 4.9750 0.6131 -3.3349 11 8 4.0916 2.5324 -2.2834 12 6 3.9635 0.7705 1.4135 13 8 4.6663 -0.2176 1.3886 14 7 3.5390 1.2658 2.5928 15 6 3.9260 0.6106 3.8446 16 6 3.3166 1.3676 5.0262 17 1 2.3736 1.8750 4.8227 18 6 4.2807 2.0396 6.0060 19 1 5.3517 2.0207 5.8041 20 6 3.7301 3.1570 6.9180 21 7 3.2018 2.4446 8.1047 22 6 3.2874 2.8223 9.4182 23 1 3.0874 2.1050 10.2004 24 6 3.6313 4.1271 9.7441 25 7 3.6999 5.0444 8.8027 26 14 3.9967 4.5810 11.5190 27 1 5.4450 4.3951 11.7894 28 1 3.6276 6.0003 11.7530 29 1 3.2078 3.7086 12.4255 30 6 2.5594 1.2313 7.5480 31 6 3.5089 0.7698 6.4214 32 1 4.0049 -0.1948 6.5291 33 1 -0.3633 0.5138 0.8899 34 1 -0.3634 0.5139 -0.8900 35 1 -0.3634 -1.0276 -0.0005 36 1 1.8933 -0.5139 -0.8900 37 1 1.8932 -0.5139 0.8900 38 1 0.5490 2.1253 -1.3970 39 1 1.9983 3.1543 -1.3072 40 1 2.0700 1.5875 -2.1492 41 1 4.3742 -0.2195 -0.9160 42 1 4.3242 -0.2168 -3.6103 43 1 5.0805 1.2889 -4.1835 44 1 5.9548 0.2281 -3.0525 45 1 2.9771 2.0564 2.6127 46 1 3.5624 -0.4170 3.8444 47 1 5.0124 0.6114 3.9343 48 1 4.5293 3.8388 7.2085 49 1 2.9321 3.7011 6.4128 50 1 3.9406 5.9560 9.0306 51 1 1.5774 1.4735 7.1420 52 1 2.4755 0.4602 8.3139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276748133.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:34 Heat of formation + Delta-G solvation = -29.259128 kcal Electronic energy + Delta-G solvation = -29773.737550 eV Core-core repulsion = 25774.536661 eV Total energy + Delta-G solvation = -3999.200889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.98742 -39.44732 -38.73654 -36.79565 -35.17571 -33.96722 -33.37785 -31.24310 -30.77183 -29.43080 -28.32262 -27.18650 -26.55010 -24.79569 -23.94545 -21.42849 -21.21836 -20.99264 -20.03641 -19.63516 -19.29685 -17.96308 -17.03458 -16.84694 -16.46173 -16.04877 -15.58492 -15.44661 -14.93422 -14.85359 -14.44992 -14.22112 -14.01162 -13.88762 -13.55578 -13.18015 -13.00431 -12.90757 -12.77416 -12.69404 -12.63209 -12.56442 -12.16457 -11.87937 -11.78246 -11.45757 -11.28695 -11.15019 -10.97778 -10.93403 -10.86454 -10.73254 -10.33791 -10.16426 -10.15101 -10.10428 -9.77510 -9.49832 -9.35614 -9.13355 -9.04466 -8.66975 -6.90173 -5.82724 -3.17186 2.29558 2.39569 2.61675 3.20057 3.36421 3.41788 3.43610 4.08145 4.31770 4.36555 4.43455 4.50540 4.56528 4.73297 4.84154 4.91860 5.01588 5.12339 5.18144 5.19993 5.26207 5.30449 5.33211 5.39062 5.41542 5.45952 5.49375 5.67246 5.70384 5.74476 5.80768 5.81995 5.84045 5.87439 5.90071 5.99398 6.10786 6.18322 6.19395 6.24170 6.49964 6.61933 6.67261 6.87780 7.20275 7.28324 7.32237 7.49865 7.68918 7.91522 7.96425 8.17951 9.08166 9.70877 10.47578 11.31545 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.002072 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.258444 B =13510.128073 C =13750.834897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.098 4.098 4 H 0.085 0.915 5 C -0.138 4.138 6 C 0.130 3.870 7 H 0.115 0.885 8 N -0.710 5.710 9 C 0.513 3.487 10 C -0.174 4.174 11 O -0.541 6.541 12 C 0.513 3.487 13 O -0.542 6.542 14 N -0.715 5.715 15 C 0.156 3.844 16 C -0.151 4.151 17 H 0.103 0.897 18 C -0.167 4.167 19 H 0.102 0.898 20 C 0.183 3.817 21 N -0.594 5.594 22 C -0.227 4.227 23 H 0.077 0.923 24 C -0.006 4.006 25 N -0.916 5.916 26 Si 0.913 3.087 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.154 3.846 31 C -0.164 4.164 32 H 0.104 0.896 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.410 0.590 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.405 0.595 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.023 0.977 50 H 0.254 0.746 51 H 0.025 0.975 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.411 -10.788 -23.365 25.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.118 4.118 4 H 0.103 0.897 5 C -0.195 4.195 6 C 0.021 3.979 7 H 0.132 0.868 8 N -0.364 5.364 9 C 0.300 3.700 10 C -0.233 4.233 11 O -0.418 6.418 12 C 0.298 3.702 13 O -0.420 6.420 14 N -0.367 5.367 15 C 0.033 3.967 16 C -0.170 4.170 17 H 0.121 0.879 18 C -0.187 4.187 19 H 0.120 0.880 20 C 0.058 3.942 21 N -0.318 5.318 22 C -0.355 4.355 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.562 5.562 26 Si 0.743 3.257 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.205 1.205 30 C 0.028 3.972 31 C -0.185 4.185 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.246 0.754 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.240 0.760 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.041 0.959 50 H 0.065 0.935 51 H 0.042 0.958 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.057 -10.439 -23.238 25.558 hybrid contribution 0.137 0.148 1.019 1.039 sum -1.920 -10.291 -22.218 24.561 Atomic orbital electron populations 1.21796 0.95364 1.01688 1.02068 1.21572 0.96394 0.95582 1.02168 1.21594 0.92261 0.97558 1.00396 0.89710 1.21893 1.00560 1.01161 0.95879 1.20898 0.94554 0.97972 0.84486 0.86751 1.45742 1.64314 1.15009 1.11363 1.20746 0.77714 0.87643 0.83876 1.21910 1.02427 1.02144 0.96850 1.90743 1.51580 1.16386 1.83117 1.20465 0.79900 0.84517 0.85302 1.90695 1.37799 1.26150 1.87334 1.45966 1.52924 1.32121 1.05652 1.20893 0.99505 0.95699 0.80648 1.22522 1.01027 1.03648 0.89833 0.87868 1.24377 0.96702 0.97620 1.00012 0.88025 1.21056 0.97592 0.90850 0.84748 1.45213 1.62503 1.21596 1.02477 1.19005 1.41790 0.93784 0.80969 0.90542 1.24904 1.02231 0.95289 0.97885 1.69895 1.53238 1.01817 1.31242 0.86105 0.78191 0.77505 0.83871 1.21482 1.21639 1.20527 1.21138 0.92947 0.90625 0.92491 1.23847 1.04020 0.97571 0.93048 0.87799 0.92488 0.92460 0.92788 0.91858 0.91946 0.92732 0.91617 0.92680 0.75368 0.89415 0.88858 0.89262 0.76027 0.91145 0.91276 0.89263 0.95903 0.93542 0.95781 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.12 -0.94 5.01 -26.74 -0.13 -1.08 16 3 C -0.10 -0.79 2.17 -90.62 -0.20 -0.99 16 4 H 0.08 0.63 7.56 -51.93 -0.39 0.24 16 5 C -0.14 -1.19 7.47 37.16 0.28 -0.92 16 6 C 0.13 1.21 2.42 -69.08 -0.17 1.04 16 7 H 0.11 1.16 7.58 -51.93 -0.39 0.77 16 8 N -0.71 -6.04 4.17 -54.93 -0.23 -6.27 16 9 C 0.51 4.59 6.30 -10.98 -0.07 4.52 16 10 C -0.17 -0.91 10.32 36.01 0.37 -0.53 16 11 O -0.54 -6.72 14.21 5.56 0.08 -6.64 16 12 C 0.51 5.71 5.88 -10.99 -0.06 5.65 16 13 O -0.54 -7.56 15.84 5.55 0.09 -7.48 16 14 N -0.72 -7.58 5.45 -60.30 -0.33 -7.90 16 15 C 0.16 1.93 5.95 -4.04 -0.02 1.91 16 16 C -0.15 -2.17 5.39 -90.62 -0.49 -2.66 16 17 H 0.10 1.47 8.04 -51.93 -0.42 1.05 16 18 C -0.17 -3.03 6.74 -89.22 -0.60 -3.64 16 19 H 0.10 1.78 8.12 -51.93 -0.42 1.36 16 20 C 0.18 4.28 5.70 -2.41 -0.01 4.27 16 21 N -0.59 -14.98 3.38 -168.86 -0.57 -15.55 16 22 C -0.23 -6.27 10.35 -15.06 -0.16 -6.42 16 23 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 24 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 25 N -0.92 -26.54 10.86 55.49 0.60 -25.94 16 26 Si 0.91 21.78 29.56 -169.99 -5.03 16.76 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 C 0.15 3.14 7.04 -2.40 -0.02 3.12 16 31 C -0.16 -2.79 6.85 -89.21 -0.61 -3.40 16 32 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.49 7.76 -51.93 -0.40 0.08 16 37 H 0.06 0.57 7.05 -51.93 -0.37 0.21 16 38 H 0.05 0.42 6.56 -51.93 -0.34 0.08 16 39 H 0.06 0.66 7.53 -51.93 -0.39 0.27 16 40 H 0.05 0.51 5.77 -51.93 -0.30 0.21 16 41 H 0.41 3.18 7.79 -40.82 -0.32 2.86 16 42 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 44 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.40 3.61 7.82 -40.81 -0.32 3.29 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 0.94 7.94 -51.92 -0.41 0.52 16 48 H 0.09 2.36 6.51 -51.93 -0.34 2.02 16 49 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 407.62 15.07 6.14 6.14 Total: -1.00 -32.64 407.62 -9.80 -42.44 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -8.93 Total: 4.58 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.63 Total: -0.13 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.53 Total: -55.67 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.17 Total: -14.11 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.64 -9.80 -42.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276748133.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.182 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds