Wall clock time and date at job start Tue Mar 31 2020 20:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47252 * 2 1 4 4 H 1.09004 * 109.52353 * 54.92440 * 3 2 1 5 5 C 1.52755 * 109.56561 * 294.97052 * 3 2 1 6 6 N 1.46933 * 109.00900 * 185.55184 * 5 3 2 7 7 C 1.34772 * 120.63030 * 233.58464 * 6 5 3 8 8 O 1.21283 * 119.99839 * 353.78881 * 7 6 5 9 9 C 1.50701 * 119.99977 * 174.06727 * 7 6 5 10 10 C 1.50701 * 112.84771 * 293.86982 * 9 7 6 11 11 O 1.21279 * 119.99530 * 123.98358 * 10 9 7 12 12 N 1.34774 * 120.00062 * 303.98369 * 10 9 7 13 13 C 1.46507 * 119.99931 * 174.89440 * 12 10 9 14 14 C 1.53784 * 113.61308 * 162.67844 * 9 7 6 15 15 C 1.53962 * 87.01739 * 220.04389 * 14 9 7 16 16 C 1.53777 * 113.61489 * 65.06684 * 9 7 6 17 17 C 1.46930 * 118.73840 * 53.30449 * 6 5 3 18 18 C 1.53190 * 108.77800 * 306.64742 * 17 6 5 19 19 C 1.53042 * 109.31064 * 54.63314 * 18 17 6 20 20 H 1.09005 * 109.45984 * 178.61369 * 19 18 17 21 21 N 1.46497 * 109.46312 * 58.65642 * 19 18 17 22 22 C 1.36943 * 120.00029 * 84.99799 * 21 19 18 23 23 H 1.08002 * 119.99853 * 0.02562 * 22 21 19 24 24 C 1.38810 * 119.99979 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00060 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99722 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47519 * 59.99552 * 26 24 22 28 28 H 1.48504 * 109.47141 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47113 * 299.99347 * 26 24 22 30 30 H 1.08998 * 109.47008 * 299.99426 * 1 2 3 31 31 H 1.08996 * 109.47186 * 59.99899 * 1 2 3 32 32 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47069 * 240.00049 * 2 1 3 34 34 H 1.08998 * 109.47487 * 120.00816 * 2 1 3 35 35 H 1.09000 * 109.51532 * 65.66884 * 5 3 2 36 36 H 1.09000 * 109.43333 * 305.38226 * 5 3 2 37 37 H 0.97003 * 120.00419 * 354.89072 * 12 10 9 38 38 H 1.08999 * 109.46883 * 299.99598 * 13 12 10 39 39 H 1.08997 * 109.47205 * 59.99747 * 13 12 10 40 40 H 1.08999 * 109.46865 * 179.97438 * 13 12 10 41 41 H 1.09000 * 113.61314 * 334.55809 * 14 9 7 42 42 H 1.08996 * 113.61466 * 105.46902 * 14 9 7 43 43 H 1.08994 * 113.54193 * 270.81059 * 15 14 9 44 44 H 1.09000 * 113.66391 * 139.93116 * 15 14 9 45 45 H 1.08996 * 113.61460 * 254.52541 * 16 9 7 46 46 H 1.08999 * 113.61294 * 25.43560 * 16 9 7 47 47 H 1.09008 * 109.58211 * 66.43381 * 17 6 5 48 48 H 1.09000 * 109.58538 * 186.85634 * 17 6 5 49 49 H 1.08993 * 109.49954 * 174.58141 * 18 17 6 50 50 H 1.09002 * 109.49664 * 294.65157 * 18 17 6 51 51 H 0.96998 * 120.00566 * 265.00096 * 21 19 18 52 52 H 0.97004 * 119.99684 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 0.8408 5 6 1.6376 2.1273 -1.3048 6 7 2.2451 3.4644 -1.3506 7 6 1.4856 4.5566 -1.5670 8 8 0.3098 4.4336 -1.8378 9 6 2.0989 5.9303 -1.4787 10 6 2.5503 6.2810 -0.0843 11 8 3.7014 6.6061 0.1166 12 7 1.6750 6.2334 0.9394 13 6 2.1376 6.4649 2.3101 14 6 1.2522 7.0269 -2.1461 15 6 2.5746 7.6181 -2.6678 16 6 3.1616 6.2010 -2.5566 17 6 3.6952 3.5888 -1.1497 18 6 4.0737 2.8881 0.1589 19 6 3.5653 1.4450 0.1257 20 1 3.8547 0.9367 1.0455 21 7 4.1506 0.7475 -1.0219 22 6 5.3879 0.1705 -0.9142 23 1 5.9319 0.2294 0.0169 24 6 5.9428 -0.4899 -2.0017 25 7 5.2796 -0.5620 -3.1363 26 14 7.6302 -1.2775 -1.8545 27 1 7.6044 -2.3069 -0.7846 28 1 7.9938 -1.9141 -3.1460 29 1 8.6343 -0.2371 -1.5162 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.5523 2.2174 -1.3491 36 1 1.9921 1.5359 -2.1490 37 1 0.7387 6.0460 0.7687 38 1 2.8886 5.7192 2.5709 39 1 2.5741 7.4610 2.3829 40 1 1.2942 6.3871 2.9962 41 1 0.5990 6.6546 -2.9353 42 1 0.7347 7.6719 -1.4360 43 1 3.0307 8.3345 -1.9847 44 1 2.5151 7.9870 -3.6918 45 1 4.1833 6.1802 -2.1775 46 1 3.0313 5.6024 -3.4582 47 1 4.2209 3.1190 -1.9811 48 1 3.9670 4.6428 -1.0917 49 1 5.1578 2.8893 0.2719 50 1 3.6198 3.4150 0.9982 51 1 3.6620 0.6944 -1.8581 52 1 5.6672 -1.0239 -3.8962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276763206.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:52 Heat of formation + Delta-G solvation = -41.049605 kcal Electronic energy + Delta-G solvation = -32424.425002 eV Core-core repulsion = 28424.712839 eV Total energy + Delta-G solvation = -3999.712162 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.47617 -39.36932 -38.11049 -36.92913 -34.76499 -34.41938 -33.75670 -31.69213 -29.50827 -29.07953 -28.16568 -26.38153 -25.69362 -24.61376 -23.73044 -23.46027 -21.70752 -20.87767 -20.35320 -19.37817 -18.48192 -17.58456 -17.25351 -16.36594 -16.21862 -15.93516 -15.17423 -15.13107 -14.91708 -14.54422 -14.36371 -13.95698 -13.89823 -13.47944 -13.31881 -13.25246 -13.07173 -12.91653 -12.61131 -12.56916 -12.47487 -12.22435 -12.12764 -11.68550 -11.42550 -11.38817 -11.13813 -11.06409 -10.94542 -10.80401 -10.69893 -10.54409 -10.31233 -10.27032 -10.19867 -9.99185 -9.79061 -9.55121 -9.44532 -9.30722 -8.90621 -8.25552 -6.97089 -5.78421 -3.06720 2.33051 2.63391 3.01206 3.19228 3.42842 3.48216 3.48401 4.29341 4.35268 4.49413 4.58012 4.59023 4.63739 5.01547 5.11142 5.21480 5.27854 5.32098 5.34323 5.50349 5.54028 5.55940 5.60259 5.61099 5.65163 5.66787 5.74141 5.79036 5.82905 5.87128 5.89124 5.93075 6.08454 6.14034 6.17903 6.19221 6.22759 6.33908 6.36837 6.45476 6.54877 6.62892 6.71964 6.76524 6.93787 6.99994 7.23225 7.64807 7.69019 8.00186 8.26008 8.40033 9.51765 10.07956 10.43253 11.43900 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011858 B = 0.004127 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.620834 B = 6782.697689 C = 7486.337400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.063 0.937 5 C 0.118 3.882 6 N -0.591 5.591 7 C 0.531 3.469 8 O -0.546 6.546 9 C -0.137 4.137 10 C 0.550 3.450 11 O -0.522 6.522 12 N -0.730 5.730 13 C 0.089 3.911 14 C -0.101 4.101 15 C -0.141 4.141 16 C -0.111 4.111 17 C 0.102 3.898 18 C -0.145 4.145 19 C 0.179 3.821 20 H 0.050 0.950 21 N -0.717 5.717 22 C -0.237 4.237 23 H 0.068 0.932 24 C -0.010 4.010 25 N -0.933 5.933 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.404 0.596 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.073 0.927 50 H 0.043 0.957 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.383 14.238 6.650 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.082 0.918 5 C -0.004 4.004 6 N -0.321 5.321 7 C 0.317 3.683 8 O -0.425 6.425 9 C -0.143 4.143 10 C 0.335 3.665 11 O -0.398 6.398 12 N -0.381 5.381 13 C -0.055 4.055 14 C -0.139 4.139 15 C -0.178 4.178 16 C -0.149 4.149 17 C -0.020 4.020 18 C -0.186 4.186 19 C 0.068 3.932 20 H 0.068 0.932 21 N -0.360 5.360 22 C -0.369 4.369 23 H 0.086 0.914 24 C -0.206 4.206 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.238 0.762 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.092 0.908 50 H 0.062 0.938 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.968 14.285 6.716 18.669 hybrid contribution 0.514 -0.696 -0.167 0.881 sum -9.455 13.588 6.549 17.802 Atomic orbital electron populations 1.21850 0.96829 1.01071 1.01254 1.21415 0.94229 0.95681 1.03450 1.21656 0.97520 0.96116 0.96872 0.91832 1.21640 0.98573 0.81664 0.98532 1.48119 1.08956 1.06351 1.68697 1.19812 0.86149 0.85055 0.77278 1.90664 1.16078 1.86510 1.49253 1.22326 1.01867 0.95301 0.94845 1.19432 0.85418 0.76609 0.85078 1.90717 1.18142 1.46597 1.84322 1.45707 1.12187 1.73072 1.07183 1.21565 1.00621 1.01909 0.81421 1.22835 0.96536 0.94406 1.00163 1.22918 0.96014 0.96748 1.02134 1.22946 0.98505 0.96898 0.96538 1.22016 0.78620 1.01400 0.99960 1.22468 1.01839 0.98908 0.95365 1.20228 0.89632 0.90693 0.92636 0.93213 1.42445 1.19123 1.63904 1.10498 1.19168 0.93674 1.26986 0.97035 0.91359 1.24681 0.98494 1.01459 0.95989 1.69637 1.38174 1.48057 1.02218 0.86323 0.84436 0.79193 0.76540 1.21396 1.21808 1.21359 0.93464 0.92795 0.93126 0.90420 0.92002 0.89658 0.90609 0.76199 0.91914 0.92080 0.90607 0.87961 0.90856 0.89686 0.90451 0.88801 0.88679 0.89615 0.89862 0.90798 0.93792 0.78124 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 37.16 0.36 -1.65 16 2 C -0.11 -1.73 5.19 -26.73 -0.14 -1.86 16 3 C -0.10 -1.64 2.12 -90.72 -0.19 -1.83 16 4 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 5 C 0.12 1.96 4.99 -3.93 -0.02 1.94 16 6 N -0.59 -9.55 2.98 -173.02 -0.52 -10.07 16 7 C 0.53 8.17 6.55 -10.99 -0.07 8.10 16 8 O -0.55 -9.43 15.60 5.56 0.09 -9.34 16 9 C -0.14 -1.77 0.55 -156.00 -0.09 -1.86 16 10 C 0.55 7.29 5.47 -10.99 -0.06 7.23 16 11 O -0.52 -8.26 15.02 5.56 0.08 -8.18 16 12 N -0.73 -7.82 5.62 -67.08 -0.38 -8.20 16 13 C 0.09 0.78 10.71 59.85 0.64 1.42 16 14 C -0.10 -1.09 6.90 -25.82 -0.18 -1.27 16 15 C -0.14 -1.43 7.81 -25.82 -0.20 -1.63 16 16 C -0.11 -1.38 5.62 -25.92 -0.15 -1.52 16 17 C 0.10 1.74 5.38 -3.71 -0.02 1.72 16 18 C -0.14 -2.54 5.78 -26.61 -0.15 -2.69 16 19 C 0.18 3.35 2.53 -67.89 -0.17 3.17 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.72 -16.45 3.72 -53.38 -0.20 -16.64 16 22 C -0.24 -6.21 9.93 -15.06 -0.15 -6.35 16 23 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 25 N -0.93 -27.02 13.06 55.49 0.72 -26.29 16 26 Si 0.90 21.89 29.55 -169.99 -5.02 16.86 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.71 6.70 -51.93 -0.35 0.37 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.43 7.70 -51.93 -0.40 1.03 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.40 5.76 -51.93 -0.30 1.10 16 36 H 0.08 1.42 6.64 -51.93 -0.34 1.07 16 37 H 0.40 3.83 8.78 -40.82 -0.36 3.47 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 1.14 7.72 -51.93 -0.40 0.74 16 42 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.09 1.26 6.45 -51.93 -0.33 0.93 16 46 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 47 H 0.09 1.70 7.74 -51.92 -0.40 1.29 16 48 H 0.08 1.35 3.09 -51.93 -0.16 1.19 16 49 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 50 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 51 H 0.38 9.42 5.95 -40.82 -0.24 9.18 16 52 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -30.44 398.07 -8.65 -39.10 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -8.75 Total: 14.22 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -0.69 Total: 2.54 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -0.37 Total: -61.20 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.17 Total: -17.52 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.44 -8.65 -39.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276763206.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.953 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds