Wall clock time and date at job start Tue Mar 31 2020 20:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47252 * 2 1 4 4 H 1.09004 * 109.52353 * 54.92440 * 3 2 1 5 5 C 1.52755 * 109.56561 * 294.97052 * 3 2 1 6 6 N 1.46933 * 109.00900 * 185.55184 * 5 3 2 7 7 C 1.34772 * 120.63030 * 233.58464 * 6 5 3 8 8 O 1.21283 * 119.99839 * 353.78881 * 7 6 5 9 9 C 1.50701 * 119.99977 * 174.06727 * 7 6 5 10 10 C 1.50701 * 112.84771 * 293.86982 * 9 7 6 11 11 O 1.21279 * 119.99530 * 123.98358 * 10 9 7 12 12 N 1.34774 * 120.00062 * 303.98369 * 10 9 7 13 13 C 1.46507 * 119.99931 * 174.89440 * 12 10 9 14 14 C 1.53784 * 113.61308 * 162.67844 * 9 7 6 15 15 C 1.53962 * 87.01739 * 220.04389 * 14 9 7 16 16 C 1.53777 * 113.61489 * 65.06684 * 9 7 6 17 17 C 1.46930 * 118.73840 * 53.30449 * 6 5 3 18 18 C 1.53190 * 108.77800 * 306.64742 * 17 6 5 19 19 C 1.53042 * 109.31064 * 54.63314 * 18 17 6 20 20 H 1.09005 * 109.45984 * 178.61369 * 19 18 17 21 21 N 1.46497 * 109.46312 * 58.65642 * 19 18 17 22 22 C 1.36943 * 120.00029 * 84.99799 * 21 19 18 23 23 H 1.08002 * 119.99853 * 0.02562 * 22 21 19 24 24 C 1.38810 * 119.99979 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00060 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99722 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47519 * 59.99552 * 26 24 22 28 28 H 1.48504 * 109.47141 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47113 * 299.99347 * 26 24 22 30 30 H 1.08998 * 109.47008 * 299.99426 * 1 2 3 31 31 H 1.08996 * 109.47186 * 59.99899 * 1 2 3 32 32 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47069 * 240.00049 * 2 1 3 34 34 H 1.08998 * 109.47487 * 120.00816 * 2 1 3 35 35 H 1.09000 * 109.51532 * 65.66884 * 5 3 2 36 36 H 1.09000 * 109.43333 * 305.38226 * 5 3 2 37 37 H 0.97003 * 120.00419 * 354.89072 * 12 10 9 38 38 H 1.08999 * 109.46883 * 299.99598 * 13 12 10 39 39 H 1.08997 * 109.47205 * 59.99747 * 13 12 10 40 40 H 1.08999 * 109.46865 * 179.97438 * 13 12 10 41 41 H 1.09000 * 113.61314 * 334.55809 * 14 9 7 42 42 H 1.08996 * 113.61466 * 105.46902 * 14 9 7 43 43 H 1.08994 * 113.54193 * 270.81059 * 15 14 9 44 44 H 1.09000 * 113.66391 * 139.93116 * 15 14 9 45 45 H 1.08996 * 113.61460 * 254.52541 * 16 9 7 46 46 H 1.08999 * 113.61294 * 25.43560 * 16 9 7 47 47 H 1.09008 * 109.58211 * 66.43381 * 17 6 5 48 48 H 1.09000 * 109.58538 * 186.85634 * 17 6 5 49 49 H 1.08993 * 109.49954 * 174.58141 * 18 17 6 50 50 H 1.09002 * 109.49664 * 294.65157 * 18 17 6 51 51 H 0.96998 * 120.00566 * 265.00096 * 21 19 18 52 52 H 0.97004 * 119.99684 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 0.8408 5 6 1.6376 2.1273 -1.3048 6 7 2.2451 3.4644 -1.3506 7 6 1.4856 4.5566 -1.5670 8 8 0.3098 4.4336 -1.8378 9 6 2.0989 5.9303 -1.4787 10 6 2.5503 6.2810 -0.0843 11 8 3.7014 6.6061 0.1166 12 7 1.6750 6.2334 0.9394 13 6 2.1376 6.4649 2.3101 14 6 1.2522 7.0269 -2.1461 15 6 2.5746 7.6181 -2.6678 16 6 3.1616 6.2010 -2.5566 17 6 3.6952 3.5888 -1.1497 18 6 4.0737 2.8881 0.1589 19 6 3.5653 1.4450 0.1257 20 1 3.8547 0.9367 1.0455 21 7 4.1506 0.7475 -1.0219 22 6 5.3879 0.1705 -0.9142 23 1 5.9319 0.2294 0.0169 24 6 5.9428 -0.4899 -2.0017 25 7 5.2796 -0.5620 -3.1363 26 14 7.6302 -1.2775 -1.8545 27 1 7.6044 -2.3069 -0.7846 28 1 7.9938 -1.9141 -3.1460 29 1 8.6343 -0.2371 -1.5162 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.5523 2.2174 -1.3491 36 1 1.9921 1.5359 -2.1490 37 1 0.7387 6.0460 0.7687 38 1 2.8886 5.7192 2.5709 39 1 2.5741 7.4610 2.3829 40 1 1.2942 6.3871 2.9962 41 1 0.5990 6.6546 -2.9353 42 1 0.7347 7.6719 -1.4360 43 1 3.0307 8.3345 -1.9847 44 1 2.5151 7.9870 -3.6918 45 1 4.1833 6.1802 -2.1775 46 1 3.0313 5.6024 -3.4582 47 1 4.2209 3.1190 -1.9811 48 1 3.9670 4.6428 -1.0917 49 1 5.1578 2.8893 0.2719 50 1 3.6198 3.4150 0.9982 51 1 3.6620 0.6944 -1.8581 52 1 5.6672 -1.0239 -3.8962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276763206.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:51 Heat of formation + Delta-G solvation = -60.260360 kcal Electronic energy + Delta-G solvation = -32425.258043 eV Core-core repulsion = 28424.712839 eV Total energy + Delta-G solvation = -4000.545203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.58740 -40.64373 -39.37749 -38.01928 -35.95961 -35.66335 -35.35785 -33.44308 -31.06745 -30.43683 -29.27651 -27.41803 -26.65191 -26.02435 -25.29825 -25.02264 -22.66849 -22.24778 -21.53020 -20.37542 -19.90686 -19.27341 -18.78373 -17.48419 -17.33684 -16.98692 -16.64747 -16.30592 -16.14584 -15.87366 -15.83727 -15.42367 -15.28933 -14.82466 -14.63293 -14.57283 -14.32482 -14.10785 -13.90478 -13.67821 -13.53337 -13.24100 -13.10112 -12.99677 -12.86315 -12.82374 -12.65955 -12.49947 -12.36389 -12.18507 -12.12341 -12.00860 -11.87055 -11.61217 -11.47242 -11.43965 -11.17134 -11.05426 -10.85676 -10.64859 -10.20221 -9.66854 -8.93421 -7.89192 -5.15429 1.23438 1.46101 1.48965 1.49979 1.55740 1.90488 2.10935 2.59102 3.26751 3.32421 3.44350 3.45727 3.62164 3.74380 3.77491 3.84094 3.99108 4.04731 4.20808 4.29906 4.31564 4.42983 4.44881 4.47361 4.54533 4.61784 4.61925 4.66398 4.74944 4.79632 4.84159 4.92061 4.93555 4.96133 4.98286 5.00117 5.02564 5.12939 5.18939 5.22315 5.23544 5.32730 5.33978 5.39845 5.49012 5.57751 5.63557 6.31609 6.32358 6.35623 6.96770 7.05229 7.40218 8.15364 8.39685 9.33683 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011858 B = 0.004127 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.620834 B = 6782.697689 C = 7486.337400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.089 4.089 4 H 0.085 0.915 5 C 0.124 3.876 6 N -0.593 5.593 7 C 0.534 3.466 8 O -0.561 6.561 9 C -0.140 4.140 10 C 0.548 3.452 11 O -0.552 6.552 12 N -0.721 5.721 13 C 0.085 3.915 14 C -0.093 4.093 15 C -0.127 4.127 16 C -0.119 4.119 17 C 0.116 3.884 18 C -0.136 4.136 19 C 0.174 3.826 20 H 0.047 0.953 21 N -0.722 5.722 22 C -0.230 4.230 23 H 0.072 0.928 24 C -0.069 4.069 25 N -0.967 5.967 26 Si 0.962 3.038 27 H -0.281 1.281 28 H -0.300 1.300 29 H -0.282 1.282 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.412 0.588 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.052 0.948 48 H 0.094 0.906 49 H 0.057 0.943 50 H 0.063 0.937 51 H 0.374 0.626 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.733 15.737 8.371 21.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.109 4.109 4 H 0.104 0.896 5 C 0.002 3.998 6 N -0.323 5.323 7 C 0.322 3.678 8 O -0.441 6.441 9 C -0.146 4.146 10 C 0.333 3.667 11 O -0.430 6.430 12 N -0.371 5.371 13 C -0.058 4.058 14 C -0.131 4.131 15 C -0.164 4.164 16 C -0.157 4.157 17 C -0.007 4.007 18 C -0.176 4.176 19 C 0.065 3.935 20 H 0.065 0.935 21 N -0.363 5.363 22 C -0.362 4.362 23 H 0.090 0.910 24 C -0.261 4.261 25 N -0.618 5.618 26 Si 0.792 3.208 27 H -0.207 1.207 28 H -0.227 1.227 29 H -0.209 1.209 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.066 0.934 37 H 0.247 0.753 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.128 0.872 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.098 0.902 46 H 0.108 0.892 47 H 0.071 0.929 48 H 0.112 0.888 49 H 0.076 0.924 50 H 0.082 0.918 51 H 0.208 0.792 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.355 15.807 8.497 21.236 hybrid contribution 0.880 -1.129 -0.638 1.567 sum -10.475 14.678 7.858 19.670 Atomic orbital electron populations 1.21777 0.94406 1.02022 1.02000 1.21335 0.96311 0.94883 1.01783 1.21555 0.95376 0.96698 0.97268 0.89627 1.21511 0.98823 0.81735 0.97778 1.48108 1.08521 1.06589 1.69126 1.20190 0.85833 0.85578 0.76229 1.90654 1.16767 1.86882 1.49748 1.22421 1.02634 0.94230 0.95352 1.19453 0.85271 0.76511 0.85469 1.90710 1.19351 1.48265 1.84679 1.45729 1.12263 1.71700 1.07438 1.21735 1.01800 1.01451 0.80812 1.22846 0.96594 0.93519 1.00162 1.22855 0.95003 0.95186 1.03357 1.22976 0.97752 0.98819 0.96193 1.21756 0.78991 1.01542 0.98369 1.22325 1.00888 0.98155 0.96276 1.20423 0.91451 0.90757 0.90841 0.93522 1.42529 1.18320 1.64099 1.11333 1.19505 0.94490 1.25444 0.96746 0.90997 1.25348 1.01696 1.03085 0.96010 1.69790 1.39579 1.49653 1.02770 0.85380 0.80962 0.78392 0.76019 1.20741 1.22669 1.20871 0.91608 0.93028 0.92192 0.93740 0.91975 0.88841 0.93374 0.75255 0.93163 0.92085 0.87204 0.88202 0.89019 0.89565 0.88517 0.90197 0.89164 0.92936 0.88772 0.92405 0.91796 0.79245 0.94340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.67 71.98 0.70 -2.85 16 2 C -0.10 -3.24 5.19 30.59 0.16 -3.08 16 3 C -0.09 -2.79 2.12 -10.86 -0.02 -2.81 16 4 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 5 C 0.12 4.11 4.99 86.22 0.43 4.54 16 6 N -0.59 -18.99 2.98 -819.72 -2.44 -21.43 16 7 C 0.53 15.85 6.55 87.66 0.57 16.42 16 8 O -0.56 -18.49 15.60 -3.04 -0.05 -18.54 16 9 C -0.14 -3.44 0.55 -53.15 -0.03 -3.46 16 10 C 0.55 13.61 5.47 87.66 0.48 14.09 16 11 O -0.55 -16.87 15.02 -3.03 -0.05 -16.92 16 12 N -0.72 -13.59 5.62 -484.52 -2.72 -16.31 16 13 C 0.09 1.27 10.71 127.77 1.37 2.64 16 14 C -0.09 -1.79 6.90 31.18 0.22 -1.58 16 15 C -0.13 -2.33 7.81 31.19 0.24 -2.09 16 16 C -0.12 -2.90 5.62 31.12 0.17 -2.73 16 17 C 0.12 4.00 5.38 86.36 0.46 4.46 16 18 C -0.14 -4.71 5.78 30.67 0.18 -4.54 16 19 C 0.17 6.51 2.53 45.02 0.11 6.62 16 20 H 0.05 1.79 8.08 -2.38 -0.02 1.77 16 21 N -0.72 -33.93 3.72 -322.80 -1.20 -35.13 16 22 C -0.23 -12.19 9.93 84.03 0.83 -11.36 16 23 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 24 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 25 N -0.97 -57.82 13.06 21.65 0.28 -57.53 16 26 Si 0.96 45.73 29.55 68.60 2.03 47.75 16 27 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 28 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 29 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.29 6.70 -2.39 -0.02 1.27 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.04 1.67 7.70 -2.39 -0.02 1.65 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.09 2.97 5.76 -2.39 -0.01 2.95 16 36 H 0.05 1.87 6.64 -2.39 -0.02 1.86 16 37 H 0.41 6.53 8.78 -92.71 -0.81 5.72 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 2.02 7.72 -2.39 -0.02 2.00 16 42 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 43 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.08 2.17 6.45 -2.39 -0.02 2.15 16 46 H 0.09 2.25 8.09 -2.39 -0.02 2.23 16 47 H 0.05 2.17 7.74 -2.38 -0.02 2.15 16 48 H 0.09 3.07 3.09 -2.39 -0.01 3.07 16 49 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.37 19.15 5.95 -92.71 -0.55 18.60 16 52 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -66.32 398.07 1.76 -64.55 By element: Atomic # 1 Polarization: 43.09 SS G_CDS: -0.43 Total: 42.66 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 6.34 Total: 10.89 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -6.08 Total: -130.40 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.09 Total: -35.45 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -66.32 1.76 -64.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276763206.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.292 kcal (2) G-P(sol) polarization free energy of solvation -66.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds