Wall clock time and date at job start Tue Mar 31 2020 20:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47112 * 2 1 4 4 H 1.08997 * 109.52537 * 305.07846 * 3 2 1 5 5 C 1.53624 * 109.43193 * 65.28984 * 3 2 1 6 6 N 1.46926 * 108.54047 * 174.71927 * 5 3 2 7 7 C 1.34778 * 120.62335 * 126.36665 * 6 5 3 8 8 O 1.21281 * 120.00516 * 355.05144 * 7 6 5 9 9 C 1.50705 * 119.99506 * 175.04215 * 7 6 5 10 10 C 1.50703 * 112.84623 * 67.65701 * 9 7 6 11 11 O 1.21278 * 120.00500 * 234.63002 * 10 9 7 12 12 N 1.34781 * 119.99921 * 54.63467 * 10 9 7 13 13 C 1.46501 * 119.99999 * 175.26443 * 12 10 9 14 14 C 1.53786 * 113.61464 * 198.84895 * 9 7 6 15 15 C 1.53960 * 87.01546 * 89.23503 * 14 9 7 16 16 C 1.53771 * 113.61814 * 296.46073 * 9 7 6 17 17 C 1.46925 * 118.74280 * 306.09354 * 6 5 3 18 18 C 1.53196 * 108.77310 * 53.86090 * 17 6 5 19 19 C 1.53040 * 109.49266 * 184.99983 * 3 2 1 20 20 H 1.08999 * 109.45015 * 58.67167 * 19 3 2 21 21 N 1.46499 * 109.46427 * 298.70393 * 19 3 2 22 22 C 1.36930 * 120.00377 * 154.93580 * 21 19 3 23 23 H 1.08001 * 120.00306 * 359.97438 * 22 21 19 24 24 C 1.38815 * 119.99903 * 180.02562 * 22 21 19 25 25 N 1.31617 * 120.00485 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99717 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47299 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47252 * 119.99831 * 26 24 22 29 29 H 1.48508 * 109.47003 * 239.99432 * 26 24 22 30 30 H 1.08998 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46883 * 300.00386 * 1 2 3 32 32 H 1.09000 * 109.46859 * 59.99990 * 1 2 3 33 33 H 1.09000 * 109.46883 * 239.99614 * 2 1 3 34 34 H 1.09000 * 109.46859 * 120.00010 * 2 1 3 35 35 H 1.08999 * 109.73733 * 54.98714 * 5 3 2 36 36 H 1.08993 * 109.66283 * 294.41467 * 5 3 2 37 37 H 0.96997 * 120.00332 * 354.98757 * 12 10 9 38 38 H 1.09005 * 109.46548 * 299.72022 * 13 12 10 39 39 H 1.08996 * 109.47407 * 59.71770 * 13 12 10 40 40 H 1.08997 * 109.47336 * 179.72810 * 13 12 10 41 41 H 1.09000 * 113.61071 * 203.75098 * 14 9 7 42 42 H 1.08991 * 113.61255 * 334.65606 * 14 9 7 43 43 H 1.09002 * 113.53142 * 270.81156 * 15 14 9 44 44 H 1.09000 * 113.73979 * 139.94668 * 15 14 9 45 45 H 1.08999 * 113.61537 * 25.35105 * 16 9 7 46 46 H 1.09004 * 113.61592 * 156.16441 * 16 9 7 47 47 H 1.08993 * 109.58384 * 173.64583 * 17 6 5 48 48 H 1.08998 * 109.58623 * 294.07442 * 17 6 5 49 49 H 1.08997 * 109.50046 * 65.31652 * 18 17 6 50 50 H 1.08998 * 109.49700 * 185.41300 * 18 17 6 51 51 H 0.97005 * 119.99708 * 334.93848 * 21 19 3 52 52 H 0.96991 * 120.00442 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6049 1.9827 -0.8407 5 6 1.6394 2.1262 1.3161 6 7 2.2453 3.4643 1.3507 7 6 1.4860 4.5564 1.5681 8 8 0.2804 4.4507 1.6480 9 6 2.1350 5.9088 1.7121 10 6 2.7619 6.3964 0.4313 11 8 3.9292 6.7247 0.4140 12 7 2.0251 6.4677 -0.6950 13 6 2.6037 7.0384 -1.9139 14 6 1.2367 6.9537 2.3950 15 6 1.8283 6.4706 3.7318 16 6 3.0629 6.0200 2.9333 17 6 3.6955 3.5887 1.1499 18 6 4.0738 2.8880 -0.1589 19 6 3.5653 1.4449 -0.1257 20 1 3.8544 0.9368 -1.0457 21 7 4.1508 0.7473 1.0218 22 6 5.3880 0.1704 0.9140 23 1 5.9320 0.2293 -0.0171 24 6 5.9424 -0.4909 2.0012 25 7 5.2793 -0.5631 3.1359 26 14 7.6299 -1.2786 1.8539 27 1 8.1612 -1.0584 0.4848 28 1 8.5498 -0.6674 2.8466 29 1 7.5199 -2.7367 2.1132 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0009 1.5395 2.1606 36 1 0.5544 2.2149 1.3678 37 1 1.1130 6.1375 -0.6997 38 1 2.8949 8.0723 -1.7282 39 1 3.4809 6.4606 -2.2048 40 1 1.8658 7.0073 -2.7155 41 1 1.4984 7.9826 2.1482 42 1 0.1713 6.7496 2.2889 43 1 1.2739 5.6464 4.1806 44 1 2.0344 7.2759 4.4370 45 1 3.4696 5.0633 3.2611 46 1 3.8257 6.7922 2.8333 47 1 3.9672 4.6426 1.0919 48 1 4.2211 3.1188 1.9811 49 1 3.6195 3.4146 -0.9981 50 1 5.1579 2.8892 -0.2720 51 1 3.6620 0.6941 1.8580 52 1 5.6666 -1.0256 3.8954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276763207.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:55 Heat of formation + Delta-G solvation = -41.808650 kcal Electronic energy + Delta-G solvation = -32405.717415 eV Core-core repulsion = 28405.972337 eV Total energy + Delta-G solvation = -3999.745077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.48102 -39.30073 -38.23848 -36.84603 -34.75534 -34.44093 -33.74726 -31.70921 -29.51621 -29.08413 -28.20679 -26.21963 -25.63691 -24.74459 -23.76357 -23.49232 -21.30494 -21.08920 -20.69717 -18.97031 -18.59026 -17.68696 -17.31755 -16.37789 -16.16973 -15.84486 -15.31069 -15.11399 -14.74788 -14.60469 -14.28612 -14.07194 -13.94353 -13.58462 -13.30786 -13.23847 -13.01137 -12.90380 -12.60590 -12.55595 -12.46606 -12.22607 -12.07158 -11.68752 -11.45907 -11.43785 -11.15887 -10.99806 -10.95553 -10.81098 -10.69167 -10.52574 -10.33148 -10.28674 -10.14136 -9.89926 -9.79678 -9.57001 -9.53214 -9.29551 -8.92623 -8.28438 -6.97846 -5.79525 -3.07686 2.36735 2.57652 3.07200 3.12314 3.41539 3.48126 3.49655 4.31340 4.35995 4.45045 4.57504 4.60661 4.67346 5.02831 5.11163 5.21980 5.27974 5.32298 5.35176 5.51516 5.54598 5.55316 5.60008 5.61019 5.66300 5.67831 5.77278 5.81271 5.83304 5.87976 5.89308 5.93884 6.07100 6.13423 6.16733 6.21193 6.25722 6.32486 6.36340 6.43290 6.54043 6.61047 6.70698 6.75324 6.92931 6.98231 7.24826 7.60846 7.69363 8.01674 8.22318 8.38916 9.50913 10.06909 10.42181 11.42984 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011463 B = 0.004147 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.133493 B = 6749.998388 C = 7354.461133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.101 4.101 4 H 0.065 0.935 5 C 0.117 3.883 6 N -0.590 5.590 7 C 0.539 3.461 8 O -0.544 6.544 9 C -0.135 4.135 10 C 0.539 3.461 11 O -0.526 6.526 12 N -0.731 5.731 13 C 0.088 3.912 14 C -0.107 4.107 15 C -0.139 4.139 16 C -0.110 4.110 17 C 0.101 3.899 18 C -0.145 4.145 19 C 0.178 3.822 20 H 0.050 0.950 21 N -0.718 5.718 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.293 1.293 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.404 0.596 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.103 0.897 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.044 0.956 50 H 0.074 0.926 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.349 14.108 -5.922 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.121 4.121 4 H 0.083 0.917 5 C -0.005 4.005 6 N -0.320 5.320 7 C 0.325 3.675 8 O -0.423 6.423 9 C -0.142 4.142 10 C 0.325 3.675 11 O -0.402 6.402 12 N -0.382 5.382 13 C -0.056 4.056 14 C -0.145 4.145 15 C -0.177 4.177 16 C -0.148 4.148 17 C -0.021 4.021 18 C -0.186 4.186 19 C 0.068 3.932 20 H 0.068 0.932 21 N -0.360 5.360 22 C -0.367 4.367 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.581 5.581 26 Si 0.734 3.266 27 H -0.207 1.207 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.238 0.762 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.121 0.879 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.063 0.937 50 H 0.093 0.907 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.947 14.211 -5.968 18.344 hybrid contribution 0.594 -0.687 0.083 0.912 sum -9.352 13.525 -5.885 17.465 Atomic orbital electron populations 1.21849 0.96808 1.01044 1.01286 1.21421 0.94253 0.95718 1.03429 1.21810 0.97416 0.96115 0.96776 0.91676 1.21851 0.98751 0.81352 0.98526 1.48100 1.09065 1.06302 1.68539 1.19441 0.86622 0.84526 0.76931 1.90660 1.13732 1.85859 1.52023 1.22352 1.01088 0.95985 0.94756 1.19901 0.86168 0.77340 0.84138 1.90721 1.15572 1.48763 1.85117 1.45796 1.17602 1.63821 1.10981 1.21561 0.99534 0.98778 0.85753 1.22825 1.00024 0.96597 0.95023 1.22878 0.96927 1.01599 0.96272 1.22972 0.96582 1.03884 0.91335 1.22015 0.78584 1.01450 1.00014 1.22475 1.01854 0.98995 0.95284 1.20232 0.89686 0.90644 0.92659 0.93159 1.42461 1.19138 1.63891 1.10502 1.19257 0.93625 1.26754 0.97088 0.91240 1.24683 0.98509 1.01482 0.96000 1.69648 1.38067 1.48100 1.02244 0.86181 0.84337 0.78880 0.77155 1.20655 1.21964 1.22005 0.93148 0.92808 0.93430 0.92015 0.90440 0.90468 0.89472 0.76193 0.92231 0.91876 0.90649 0.89267 0.89111 0.89590 0.90461 0.89856 0.87856 0.89868 0.89611 0.93726 0.90744 0.78136 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.68 37.16 0.36 -1.64 16 2 C -0.11 -1.72 5.19 -26.73 -0.14 -1.86 16 3 C -0.10 -1.62 2.15 -90.28 -0.19 -1.81 16 4 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 5 C 0.12 1.92 5.06 -3.49 -0.02 1.91 16 6 N -0.59 -9.42 2.97 -172.51 -0.51 -9.94 16 7 C 0.54 8.19 6.07 -10.98 -0.07 8.13 16 8 O -0.54 -9.17 15.38 5.56 0.09 -9.09 16 9 C -0.14 -1.77 0.58 -156.00 -0.09 -1.86 16 10 C 0.54 7.28 5.43 -10.98 -0.06 7.22 16 11 O -0.53 -8.51 14.87 5.56 0.08 -8.43 16 12 N -0.73 -7.99 5.65 -67.08 -0.38 -8.36 16 13 C 0.09 0.78 10.71 59.85 0.64 1.42 16 14 C -0.11 -1.16 7.11 -25.82 -0.18 -1.34 16 15 C -0.14 -1.52 7.81 -25.83 -0.20 -1.72 16 16 C -0.11 -1.40 5.90 -25.93 -0.15 -1.55 16 17 C 0.10 1.73 4.73 -3.71 -0.02 1.71 16 18 C -0.14 -2.53 5.78 -26.61 -0.15 -2.69 16 19 C 0.18 3.32 2.53 -67.89 -0.17 3.15 16 20 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 21 N -0.72 -16.37 3.72 -53.38 -0.20 -16.56 16 22 C -0.24 -6.15 9.93 -15.06 -0.15 -6.30 16 23 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -26.93 13.06 55.49 0.72 -26.21 16 26 Si 0.90 21.88 29.55 -169.99 -5.02 16.85 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.71 6.70 -51.93 -0.35 0.36 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.41 7.70 -51.93 -0.40 1.01 16 35 H 0.08 1.42 6.63 -51.93 -0.34 1.07 16 36 H 0.09 1.41 5.73 -51.93 -0.30 1.11 16 37 H 0.40 4.00 8.59 -40.82 -0.35 3.65 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 42 H 0.09 1.02 7.35 -51.93 -0.38 0.63 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.17 7.10 -51.93 -0.37 0.80 16 46 H 0.10 1.29 7.51 -51.93 -0.39 0.90 16 47 H 0.08 1.38 3.52 -51.93 -0.18 1.20 16 48 H 0.09 1.70 7.74 -51.93 -0.40 1.29 16 49 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 51 H 0.38 9.35 5.93 -40.82 -0.24 9.11 16 52 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 397.04 15.07 5.98 5.98 Total: -1.00 -30.24 397.04 -8.67 -38.91 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -8.74 Total: 14.48 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -0.69 Total: 2.36 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.36 Total: -61.07 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.17 Total: -17.51 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.24 -8.67 -38.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276763207.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.901 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds