Wall clock time and date at job start Tue Mar 31 2020 20:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47112 * 2 1 4 4 H 1.08997 * 109.52537 * 305.07846 * 3 2 1 5 5 C 1.53624 * 109.43193 * 65.28984 * 3 2 1 6 6 N 1.46926 * 108.54047 * 174.71927 * 5 3 2 7 7 C 1.34778 * 120.62335 * 126.36665 * 6 5 3 8 8 O 1.21281 * 120.00516 * 355.05144 * 7 6 5 9 9 C 1.50705 * 119.99506 * 175.04215 * 7 6 5 10 10 C 1.50703 * 112.84623 * 67.65701 * 9 7 6 11 11 O 1.21278 * 120.00500 * 234.63002 * 10 9 7 12 12 N 1.34781 * 119.99921 * 54.63467 * 10 9 7 13 13 C 1.46501 * 119.99999 * 175.26443 * 12 10 9 14 14 C 1.53786 * 113.61464 * 198.84895 * 9 7 6 15 15 C 1.53960 * 87.01546 * 89.23503 * 14 9 7 16 16 C 1.53771 * 113.61814 * 296.46073 * 9 7 6 17 17 C 1.46925 * 118.74280 * 306.09354 * 6 5 3 18 18 C 1.53196 * 108.77310 * 53.86090 * 17 6 5 19 19 C 1.53040 * 109.49266 * 184.99983 * 3 2 1 20 20 H 1.08999 * 109.45015 * 58.67167 * 19 3 2 21 21 N 1.46499 * 109.46427 * 298.70393 * 19 3 2 22 22 C 1.36930 * 120.00377 * 154.93580 * 21 19 3 23 23 H 1.08001 * 120.00306 * 359.97438 * 22 21 19 24 24 C 1.38815 * 119.99903 * 180.02562 * 22 21 19 25 25 N 1.31617 * 120.00485 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99717 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47299 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47252 * 119.99831 * 26 24 22 29 29 H 1.48508 * 109.47003 * 239.99432 * 26 24 22 30 30 H 1.08998 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46883 * 300.00386 * 1 2 3 32 32 H 1.09000 * 109.46859 * 59.99990 * 1 2 3 33 33 H 1.09000 * 109.46883 * 239.99614 * 2 1 3 34 34 H 1.09000 * 109.46859 * 120.00010 * 2 1 3 35 35 H 1.08999 * 109.73733 * 54.98714 * 5 3 2 36 36 H 1.08993 * 109.66283 * 294.41467 * 5 3 2 37 37 H 0.96997 * 120.00332 * 354.98757 * 12 10 9 38 38 H 1.09005 * 109.46548 * 299.72022 * 13 12 10 39 39 H 1.08996 * 109.47407 * 59.71770 * 13 12 10 40 40 H 1.08997 * 109.47336 * 179.72810 * 13 12 10 41 41 H 1.09000 * 113.61071 * 203.75098 * 14 9 7 42 42 H 1.08991 * 113.61255 * 334.65606 * 14 9 7 43 43 H 1.09002 * 113.53142 * 270.81156 * 15 14 9 44 44 H 1.09000 * 113.73979 * 139.94668 * 15 14 9 45 45 H 1.08999 * 113.61537 * 25.35105 * 16 9 7 46 46 H 1.09004 * 113.61592 * 156.16441 * 16 9 7 47 47 H 1.08993 * 109.58384 * 173.64583 * 17 6 5 48 48 H 1.08998 * 109.58623 * 294.07442 * 17 6 5 49 49 H 1.08997 * 109.50046 * 65.31652 * 18 17 6 50 50 H 1.08998 * 109.49700 * 185.41300 * 18 17 6 51 51 H 0.97005 * 119.99708 * 334.93848 * 21 19 3 52 52 H 0.96991 * 120.00442 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6049 1.9827 -0.8407 5 6 1.6394 2.1262 1.3161 6 7 2.2453 3.4643 1.3507 7 6 1.4860 4.5564 1.5681 8 8 0.2804 4.4507 1.6480 9 6 2.1350 5.9088 1.7121 10 6 2.7619 6.3964 0.4313 11 8 3.9292 6.7247 0.4140 12 7 2.0251 6.4677 -0.6950 13 6 2.6037 7.0384 -1.9139 14 6 1.2367 6.9537 2.3950 15 6 1.8283 6.4706 3.7318 16 6 3.0629 6.0200 2.9333 17 6 3.6955 3.5887 1.1499 18 6 4.0738 2.8880 -0.1589 19 6 3.5653 1.4449 -0.1257 20 1 3.8544 0.9368 -1.0457 21 7 4.1508 0.7473 1.0218 22 6 5.3880 0.1704 0.9140 23 1 5.9320 0.2293 -0.0171 24 6 5.9424 -0.4909 2.0012 25 7 5.2793 -0.5631 3.1359 26 14 7.6299 -1.2786 1.8539 27 1 8.1612 -1.0584 0.4848 28 1 8.5498 -0.6674 2.8466 29 1 7.5199 -2.7367 2.1132 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0009 1.5395 2.1606 36 1 0.5544 2.2149 1.3678 37 1 1.1130 6.1375 -0.6997 38 1 2.8949 8.0723 -1.7282 39 1 3.4809 6.4606 -2.2048 40 1 1.8658 7.0073 -2.7155 41 1 1.4984 7.9826 2.1482 42 1 0.1713 6.7496 2.2889 43 1 1.2739 5.6464 4.1806 44 1 2.0344 7.2759 4.4370 45 1 3.4696 5.0633 3.2611 46 1 3.8257 6.7922 2.8333 47 1 3.9672 4.6426 1.0919 48 1 4.2211 3.1188 1.9811 49 1 3.6195 3.4146 -0.9981 50 1 5.1579 2.8892 -0.2720 51 1 3.6620 0.6941 1.8580 52 1 5.6666 -1.0256 3.8954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276763207.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:54 Heat of formation + Delta-G solvation = -60.853287 kcal Electronic energy + Delta-G solvation = -32406.543252 eV Core-core repulsion = 28405.972337 eV Total energy + Delta-G solvation = -4000.570915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.61459 -40.55971 -39.48860 -37.97853 -35.98263 -35.66065 -35.33791 -33.45025 -31.07819 -30.41801 -29.34266 -27.28771 -26.61078 -26.06770 -25.37434 -25.04232 -22.55243 -22.09670 -21.94395 -20.27522 -19.71574 -19.28656 -18.94622 -17.56002 -17.29426 -16.93104 -16.70957 -16.33546 -16.17693 -15.89082 -15.62597 -15.44175 -15.38532 -14.82749 -14.81327 -14.47655 -14.35190 -14.07745 -13.91519 -13.66582 -13.52061 -13.22719 -13.08253 -12.98565 -12.89996 -12.87470 -12.66570 -12.50067 -12.42716 -12.16897 -12.06318 -11.96627 -11.86420 -11.58269 -11.49222 -11.46925 -11.16738 -11.02742 -10.85533 -10.72738 -10.21162 -9.68393 -8.93625 -7.89864 -5.15834 1.24862 1.40940 1.47398 1.49038 1.57221 1.85847 2.15746 2.58564 3.21745 3.32006 3.38916 3.44103 3.68331 3.73908 3.76869 3.83316 3.98818 4.04107 4.22579 4.27536 4.30988 4.42938 4.44646 4.46716 4.54349 4.61508 4.63071 4.66764 4.73985 4.79283 4.85668 4.92165 4.92525 4.96294 4.98156 4.99508 5.01826 5.12304 5.18162 5.21857 5.23731 5.29888 5.35863 5.39710 5.48764 5.57918 5.63538 6.29076 6.32137 6.34100 6.94121 7.04555 7.40011 8.15018 8.39253 9.33469 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011463 B = 0.004147 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.133493 B = 6749.998388 C = 7354.461133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.089 4.089 4 H 0.087 0.913 5 C 0.123 3.877 6 N -0.591 5.591 7 C 0.543 3.457 8 O -0.556 6.556 9 C -0.140 4.140 10 C 0.537 3.463 11 O -0.557 6.557 12 N -0.721 5.721 13 C 0.084 3.916 14 C -0.094 4.094 15 C -0.133 4.133 16 C -0.114 4.114 17 C 0.116 3.884 18 C -0.137 4.137 19 C 0.174 3.826 20 H 0.048 0.952 21 N -0.722 5.722 22 C -0.227 4.227 23 H 0.073 0.927 24 C -0.070 4.070 25 N -0.967 5.967 26 Si 0.961 3.039 27 H -0.269 1.269 28 H -0.299 1.299 29 H -0.298 1.298 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.411 0.589 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.091 0.909 48 H 0.052 0.948 49 H 0.066 0.934 50 H 0.058 0.942 51 H 0.374 0.626 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.675 15.696 -7.666 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.109 4.109 4 H 0.105 0.895 5 C 0.001 3.999 6 N -0.322 5.322 7 C 0.330 3.670 8 O -0.435 6.435 9 C -0.146 4.146 10 C 0.323 3.677 11 O -0.436 6.436 12 N -0.371 5.371 13 C -0.059 4.059 14 C -0.132 4.132 15 C -0.170 4.170 16 C -0.152 4.152 17 C -0.006 4.006 18 C -0.178 4.178 19 C 0.065 3.935 20 H 0.066 0.934 21 N -0.363 5.363 22 C -0.359 4.359 23 H 0.090 0.910 24 C -0.262 4.262 25 N -0.618 5.618 26 Si 0.792 3.208 27 H -0.193 1.193 28 H -0.226 1.226 29 H -0.225 1.225 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.246 0.754 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.081 0.919 46 H 0.124 0.876 47 H 0.109 0.891 48 H 0.070 0.930 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.208 0.792 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.310 15.822 -7.775 20.945 hybrid contribution 0.955 -1.137 0.559 1.587 sum -10.355 14.684 -7.216 19.363 Atomic orbital electron populations 1.21778 0.94430 1.01982 1.02014 1.21341 0.96293 0.94932 1.01783 1.21716 0.95281 0.96699 0.97197 0.89511 1.21722 0.98994 0.81396 0.97797 1.48066 1.08546 1.06554 1.69006 1.19733 0.86375 0.84935 0.75941 1.90652 1.14278 1.86203 1.52372 1.22398 1.01786 0.95299 0.95122 1.19933 0.85855 0.77202 0.84743 1.90712 1.16813 1.50463 1.85578 1.45814 1.17686 1.62793 1.10852 1.21740 1.00094 0.98420 0.85671 1.22847 0.99495 0.96827 0.94020 1.22850 0.95449 1.01889 0.96801 1.22981 0.97334 1.03013 0.91908 1.21735 0.79032 1.01394 0.98473 1.22344 1.00936 0.98262 0.96218 1.20428 0.91493 0.90707 0.90871 0.93433 1.42547 1.18320 1.64069 1.11364 1.19574 0.94436 1.25152 0.96738 0.90951 1.25339 1.01658 1.03141 0.96054 1.69792 1.39483 1.49710 1.02817 0.85251 0.80805 0.77469 0.77317 1.19328 1.22648 1.22535 0.92223 0.92982 0.91673 0.92004 0.93704 0.93097 0.88625 0.75376 0.92005 0.93164 0.87287 0.87269 0.89060 0.90756 0.88069 0.91943 0.87558 0.89066 0.92976 0.91514 0.92348 0.79216 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.68 71.98 0.70 -2.84 16 2 C -0.11 -3.23 5.19 30.60 0.16 -3.07 16 3 C -0.09 -2.77 2.15 -10.57 -0.02 -2.79 16 4 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 5 C 0.12 4.03 5.06 86.51 0.44 4.46 16 6 N -0.59 -18.73 2.97 -818.07 -2.43 -21.15 16 7 C 0.54 15.92 6.07 87.66 0.53 16.45 16 8 O -0.56 -17.82 15.38 -3.03 -0.05 -17.86 16 9 C -0.14 -3.47 0.58 -53.15 -0.03 -3.50 16 10 C 0.54 13.64 5.43 87.66 0.48 14.11 16 11 O -0.56 -17.47 14.87 -3.02 -0.04 -17.52 16 12 N -0.72 -13.97 5.65 -484.51 -2.74 -16.71 16 13 C 0.08 1.27 10.71 127.77 1.37 2.64 16 14 C -0.09 -1.83 7.11 31.18 0.22 -1.61 16 15 C -0.13 -2.68 7.81 31.18 0.24 -2.44 16 16 C -0.11 -2.86 5.90 31.12 0.18 -2.67 16 17 C 0.12 4.01 4.73 86.36 0.41 4.42 16 18 C -0.14 -4.72 5.78 30.67 0.18 -4.54 16 19 C 0.17 6.44 2.53 45.02 0.11 6.56 16 20 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 21 N -0.72 -33.74 3.72 -322.81 -1.20 -34.94 16 22 C -0.23 -12.00 9.93 84.04 0.83 -11.16 16 23 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 24 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 25 N -0.97 -57.69 13.06 21.65 0.28 -57.41 16 26 Si 0.96 45.75 29.55 68.60 2.03 47.78 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 29 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.29 6.70 -2.39 -0.02 1.27 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.04 1.67 7.70 -2.39 -0.02 1.65 16 35 H 0.05 1.95 6.63 -2.39 -0.02 1.93 16 36 H 0.10 2.99 5.73 -2.39 -0.01 2.98 16 37 H 0.41 6.92 8.59 -92.71 -0.80 6.13 16 38 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 40 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.11 1.72 8.09 -2.39 -0.02 1.70 16 42 H 0.09 1.81 7.35 -2.39 -0.02 1.79 16 43 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.06 1.81 7.10 -2.39 -0.02 1.79 16 46 H 0.11 2.60 7.51 -2.38 -0.02 2.58 16 47 H 0.09 3.04 3.52 -2.39 -0.01 3.03 16 48 H 0.05 2.16 7.74 -2.39 -0.02 2.14 16 49 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.37 19.02 5.93 -92.70 -0.55 18.47 16 52 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -65.89 397.04 1.70 -64.18 By element: Atomic # 1 Polarization: 43.43 SS G_CDS: -0.41 Total: 43.02 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 6.27 Total: 10.61 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -6.08 Total: -130.21 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.09 Total: -35.38 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -65.89 1.70 -64.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276763207.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.327 kcal (2) G-P(sol) polarization free energy of solvation -65.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds