Wall clock time and date at job start Tue Mar 31 2020 20:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47581 * 2 1 4 4 H 1.09008 * 109.49445 * 305.00366 * 3 2 1 5 5 C 1.53196 * 109.49778 * 65.06123 * 3 2 1 6 6 N 1.46930 * 108.77324 * 174.61935 * 5 3 2 7 7 C 1.34779 * 120.62699 * 126.37541 * 6 5 3 8 8 O 1.21278 * 119.99966 * 353.45507 * 7 6 5 9 9 C 1.50696 * 119.99855 * 173.46179 * 7 6 5 10 10 C 1.50707 * 112.84720 * 298.16630 * 9 7 6 11 11 O 1.21274 * 119.99962 * 126.37080 * 10 9 7 12 12 N 1.34774 * 119.99736 * 306.36447 * 10 9 7 13 13 C 1.46502 * 120.00113 * 174.90009 * 12 10 9 14 14 C 1.53776 * 113.61557 * 166.96749 * 9 7 6 15 15 C 1.53949 * 87.02242 * 220.04494 * 14 9 7 16 16 C 1.53778 * 113.61751 * 69.36023 * 9 7 6 17 17 C 1.46919 * 118.73904 * 306.39532 * 6 5 3 18 18 C 1.53191 * 108.77767 * 53.61280 * 17 6 5 19 19 C 1.53038 * 109.52527 * 184.92273 * 3 2 1 20 20 H 1.09000 * 109.45627 * 298.68281 * 19 3 2 21 21 N 1.46498 * 109.46056 * 58.64553 * 19 3 2 22 22 C 1.36936 * 119.99601 * 205.00019 * 21 19 3 23 23 H 1.08002 * 120.00178 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00030 * 179.97438 * 22 21 19 25 25 N 1.31616 * 119.99983 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00204 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47282 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46979 * 120.00534 * 26 24 22 29 29 H 1.48505 * 109.47523 * 240.00182 * 26 24 22 30 30 H 1.08999 * 109.47611 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46796 * 300.00188 * 1 2 3 32 32 H 1.09001 * 109.46987 * 59.99669 * 1 2 3 33 33 H 1.09002 * 109.47002 * 239.99364 * 2 1 3 34 34 H 1.09001 * 109.46987 * 120.00330 * 2 1 3 35 35 H 1.08994 * 109.58494 * 294.40889 * 5 3 2 36 36 H 1.08997 * 109.58216 * 54.69543 * 5 3 2 37 37 H 0.97002 * 120.00210 * 354.89998 * 12 10 9 38 38 H 1.09000 * 109.46617 * 300.00391 * 13 12 10 39 39 H 1.09003 * 109.46649 * 59.99656 * 13 12 10 40 40 H 1.08998 * 109.47241 * 180.02562 * 13 12 10 41 41 H 1.08999 * 113.61433 * 334.57052 * 14 9 7 42 42 H 1.09005 * 113.61513 * 105.46912 * 14 9 7 43 43 H 1.08998 * 113.53937 * 270.81158 * 15 14 9 44 44 H 1.09006 * 113.74286 * 139.93926 * 15 14 9 45 45 H 1.08998 * 113.61545 * 254.53064 * 16 9 7 46 46 H 1.09002 * 113.61198 * 25.34634 * 16 9 7 47 47 H 1.09000 * 109.58541 * 173.39221 * 17 6 5 48 48 H 1.08999 * 109.58762 * 293.67860 * 17 6 5 49 49 H 1.08999 * 109.50219 * 65.31231 * 18 17 6 50 50 H 1.09007 * 109.49881 * 185.41648 * 18 17 6 51 51 H 0.96998 * 120.00257 * 24.99858 * 21 19 3 52 52 H 0.97004 * 120.00480 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6057 1.9819 -0.8417 5 6 1.6365 2.1275 1.3095 6 7 2.2425 3.4654 1.3495 7 6 1.4823 4.5574 1.5643 8 8 0.2745 4.4563 1.6084 9 6 2.1330 5.9039 1.7494 10 6 3.0367 5.9564 2.9544 11 8 4.1864 6.3231 2.8346 12 7 2.5670 5.5959 4.1651 13 6 3.4728 5.5395 5.3152 14 6 1.1470 7.0811 1.6671 15 6 2.2361 7.8339 0.8814 16 6 2.7811 6.4563 0.4690 17 6 3.6928 3.5902 1.1504 18 6 4.0733 2.8889 -0.1573 19 6 3.5655 1.4455 -0.1238 20 1 4.0001 0.9274 0.7310 21 7 3.9563 0.7618 -1.3591 22 6 5.1948 0.1866 -1.4607 23 1 5.8833 0.2365 -0.6301 24 6 5.5650 -0.4618 -2.6310 25 7 4.7258 -0.5231 -3.6431 26 14 7.2547 -1.2459 -2.7700 27 1 8.0024 -1.0385 -1.5038 28 1 7.1056 -2.7014 -3.0236 29 1 7.9994 -0.6216 -3.8930 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 0.5512 2.2163 1.3559 36 1 1.9915 1.5379 2.1547 37 1 1.6291 5.3738 4.2751 38 1 4.2678 4.8208 5.1164 39 1 3.9075 6.5247 5.4839 40 1 2.9171 5.2305 6.2005 41 1 0.2556 6.8637 1.0788 42 1 0.9182 7.5275 2.6349 43 1 2.9173 8.4008 1.5159 44 1 1.8500 8.4185 0.0464 45 1 3.8696 6.3990 0.4708 46 1 2.3382 6.0666 -0.4476 47 1 3.9642 4.6443 1.0920 48 1 4.2176 3.1234 1.9840 49 1 3.6198 3.4147 -0.9975 50 1 5.1576 2.8905 -0.2689 51 1 3.3378 0.7166 -2.1049 52 1 4.9846 -0.9758 -4.4610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276763208.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:58 Heat of formation + Delta-G solvation = -43.409933 kcal Electronic energy + Delta-G solvation = -31757.161805 eV Core-core repulsion = 27757.347291 eV Total energy + Delta-G solvation = -3999.814514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.59740 -39.45088 -38.10750 -37.04174 -34.89793 -34.73764 -33.78098 -31.74005 -29.53862 -29.39572 -28.22020 -26.42183 -25.78150 -24.76536 -23.80413 -22.84860 -21.80028 -20.85992 -20.37810 -19.69726 -19.19613 -17.80204 -17.10142 -16.44904 -16.33403 -16.05476 -15.37867 -15.19415 -14.97419 -14.82181 -14.32547 -13.97909 -13.82315 -13.59884 -13.32951 -13.22958 -13.16221 -13.02107 -12.75630 -12.67216 -12.57957 -12.24680 -12.14343 -11.76626 -11.60359 -11.46623 -11.30592 -11.22442 -10.94411 -10.86308 -10.71351 -10.61275 -10.38069 -10.21003 -10.15012 -10.13109 -9.75543 -9.60489 -9.59623 -9.43835 -8.90895 -8.51882 -6.97030 -5.78429 -3.07022 2.21130 2.45158 2.87253 2.98541 3.41783 3.47979 3.49811 4.20084 4.22994 4.35881 4.44140 4.54486 4.57254 4.91053 5.02623 5.13466 5.20789 5.21345 5.25882 5.38276 5.41924 5.45216 5.49066 5.55643 5.58074 5.60199 5.65390 5.65881 5.71320 5.77953 5.82567 5.84402 6.01887 6.05487 6.09552 6.12670 6.15000 6.32810 6.33860 6.38060 6.44408 6.54070 6.66348 6.82756 6.93818 7.04765 7.10240 7.42257 7.68963 7.86444 8.08165 8.39719 9.51491 10.08491 10.43588 11.44050 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.003447 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.665633 B = 8121.142035 C = 8868.803846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.070 0.930 5 C 0.118 3.882 6 N -0.597 5.597 7 C 0.533 3.467 8 O -0.540 6.540 9 C -0.138 4.138 10 C 0.548 3.452 11 O -0.523 6.523 12 N -0.731 5.731 13 C 0.088 3.912 14 C -0.101 4.101 15 C -0.140 4.140 16 C -0.110 4.110 17 C 0.096 3.904 18 C -0.148 4.148 19 C 0.184 3.816 20 H 0.047 0.953 21 N -0.720 5.720 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.404 0.596 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.076 0.924 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.280 13.634 15.606 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.089 0.911 5 C -0.004 4.004 6 N -0.328 5.328 7 C 0.319 3.681 8 O -0.418 6.418 9 C -0.145 4.145 10 C 0.333 3.667 11 O -0.398 6.398 12 N -0.382 5.382 13 C -0.056 4.056 14 C -0.139 4.139 15 C -0.178 4.178 16 C -0.147 4.147 17 C -0.026 4.026 18 C -0.189 4.189 19 C 0.073 3.927 20 H 0.065 0.935 21 N -0.360 5.360 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.238 0.762 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.106 0.894 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.095 0.905 51 H 0.218 0.782 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.867 13.716 15.583 22.200 hybrid contribution 0.471 -0.708 -0.322 0.910 sum -7.396 13.008 15.260 21.373 Atomic orbital electron populations 1.21840 0.96796 1.01023 1.01270 1.21452 0.94362 0.95690 1.03490 1.21770 0.97682 0.96250 0.96645 0.91147 1.21792 0.99358 0.81282 0.98008 1.48150 1.08753 1.06525 1.69387 1.19860 0.86850 0.84615 0.76770 1.90678 1.13647 1.85542 1.51913 1.22357 0.99572 0.95214 0.97324 1.19481 0.87371 0.76515 0.83381 1.90723 1.18007 1.45888 1.85200 1.45734 1.13523 1.70116 1.08846 1.21578 0.94336 1.02428 0.87236 1.22838 0.97041 0.92284 1.01752 1.22911 0.97866 0.96461 1.00525 1.22913 1.02238 0.95384 0.94193 1.22112 0.78909 1.02392 0.99232 1.22653 1.02288 0.99106 0.94893 1.20184 0.90719 0.90552 0.91223 0.93527 1.42405 1.16444 1.64443 1.12702 1.19259 0.91761 1.27194 0.98638 0.91212 1.24711 0.98095 1.01541 0.96424 1.69666 1.35165 1.48418 1.04739 0.86168 0.84084 0.78867 0.77373 1.20598 1.21941 1.21923 0.93170 0.93297 0.92963 0.89741 0.92501 0.89096 0.91653 0.76187 0.91941 0.91977 0.90515 0.87802 0.90807 0.89597 0.90360 0.88799 0.88635 0.89354 0.91869 0.92112 0.90497 0.78201 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.67 37.16 0.36 -1.71 16 2 C -0.11 -1.78 5.31 -26.73 -0.14 -1.93 16 3 C -0.10 -1.68 1.92 -90.50 -0.17 -1.85 16 4 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 5 C 0.12 1.67 5.34 -3.71 -0.02 1.65 16 6 N -0.60 -8.34 2.97 -172.77 -0.51 -8.85 16 7 C 0.53 7.30 6.48 -10.99 -0.07 7.23 16 8 O -0.54 -8.52 15.49 5.56 0.09 -8.44 16 9 C -0.14 -1.60 0.56 -156.00 -0.09 -1.68 16 10 C 0.55 6.48 5.29 -10.98 -0.06 6.42 16 11 O -0.52 -7.52 15.25 5.56 0.08 -7.44 16 12 N -0.73 -6.82 5.60 -67.07 -0.38 -7.20 16 13 C 0.09 0.66 10.71 59.85 0.64 1.30 16 14 C -0.10 -0.98 6.92 -25.83 -0.18 -1.16 16 15 C -0.14 -1.31 7.79 -25.83 -0.20 -1.51 16 16 C -0.11 -1.23 5.71 -25.92 -0.15 -1.38 16 17 C 0.10 1.38 5.57 -3.71 -0.02 1.36 16 18 C -0.15 -2.54 5.66 -26.61 -0.15 -2.69 16 19 C 0.18 3.46 2.19 -67.89 -0.15 3.31 16 20 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 21 N -0.72 -17.10 4.33 -53.38 -0.23 -17.33 16 22 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 23 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 26 Si 0.90 22.05 29.55 -169.99 -5.02 17.03 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.62 7.22 -51.93 -0.37 1.25 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.32 5.72 -51.93 -0.30 1.02 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.40 3.26 8.71 -40.82 -0.36 2.91 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 1.07 7.64 -51.93 -0.40 0.67 16 42 H 0.07 0.63 8.09 -51.93 -0.42 0.20 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.14 6.40 -51.93 -0.33 0.81 16 46 H 0.10 1.09 8.09 -51.93 -0.42 0.67 16 47 H 0.09 1.23 3.31 -51.93 -0.17 1.06 16 48 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 50 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 51 H 0.38 9.85 7.51 -40.82 -0.31 9.55 16 52 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 401.59 15.07 6.05 6.05 Total: -1.00 -31.31 401.59 -8.73 -40.04 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -8.88 Total: 12.46 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.65 Total: 0.47 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.40 Total: -60.17 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.17 Total: -15.88 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.31 -8.73 -40.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276763208.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.375 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds