Wall clock time and date at job start Tue Mar 31 2020 20:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47581 * 2 1 4 4 H 1.09008 * 109.49445 * 305.00366 * 3 2 1 5 5 C 1.53196 * 109.49778 * 65.06123 * 3 2 1 6 6 N 1.46930 * 108.77324 * 174.61935 * 5 3 2 7 7 C 1.34779 * 120.62699 * 126.37541 * 6 5 3 8 8 O 1.21278 * 119.99966 * 353.45507 * 7 6 5 9 9 C 1.50696 * 119.99855 * 173.46179 * 7 6 5 10 10 C 1.50707 * 112.84720 * 298.16630 * 9 7 6 11 11 O 1.21274 * 119.99962 * 126.37080 * 10 9 7 12 12 N 1.34774 * 119.99736 * 306.36447 * 10 9 7 13 13 C 1.46502 * 120.00113 * 174.90009 * 12 10 9 14 14 C 1.53776 * 113.61557 * 166.96749 * 9 7 6 15 15 C 1.53949 * 87.02242 * 220.04494 * 14 9 7 16 16 C 1.53778 * 113.61751 * 69.36023 * 9 7 6 17 17 C 1.46919 * 118.73904 * 306.39532 * 6 5 3 18 18 C 1.53191 * 108.77767 * 53.61280 * 17 6 5 19 19 C 1.53038 * 109.52527 * 184.92273 * 3 2 1 20 20 H 1.09000 * 109.45627 * 298.68281 * 19 3 2 21 21 N 1.46498 * 109.46056 * 58.64553 * 19 3 2 22 22 C 1.36936 * 119.99601 * 205.00019 * 21 19 3 23 23 H 1.08002 * 120.00178 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00030 * 179.97438 * 22 21 19 25 25 N 1.31616 * 119.99983 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00204 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47282 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46979 * 120.00534 * 26 24 22 29 29 H 1.48505 * 109.47523 * 240.00182 * 26 24 22 30 30 H 1.08999 * 109.47611 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46796 * 300.00188 * 1 2 3 32 32 H 1.09001 * 109.46987 * 59.99669 * 1 2 3 33 33 H 1.09002 * 109.47002 * 239.99364 * 2 1 3 34 34 H 1.09001 * 109.46987 * 120.00330 * 2 1 3 35 35 H 1.08994 * 109.58494 * 294.40889 * 5 3 2 36 36 H 1.08997 * 109.58216 * 54.69543 * 5 3 2 37 37 H 0.97002 * 120.00210 * 354.89998 * 12 10 9 38 38 H 1.09000 * 109.46617 * 300.00391 * 13 12 10 39 39 H 1.09003 * 109.46649 * 59.99656 * 13 12 10 40 40 H 1.08998 * 109.47241 * 180.02562 * 13 12 10 41 41 H 1.08999 * 113.61433 * 334.57052 * 14 9 7 42 42 H 1.09005 * 113.61513 * 105.46912 * 14 9 7 43 43 H 1.08998 * 113.53937 * 270.81158 * 15 14 9 44 44 H 1.09006 * 113.74286 * 139.93926 * 15 14 9 45 45 H 1.08998 * 113.61545 * 254.53064 * 16 9 7 46 46 H 1.09002 * 113.61198 * 25.34634 * 16 9 7 47 47 H 1.09000 * 109.58541 * 173.39221 * 17 6 5 48 48 H 1.08999 * 109.58762 * 293.67860 * 17 6 5 49 49 H 1.08999 * 109.50219 * 65.31231 * 18 17 6 50 50 H 1.09007 * 109.49881 * 185.41648 * 18 17 6 51 51 H 0.96998 * 120.00257 * 24.99858 * 21 19 3 52 52 H 0.97004 * 120.00480 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6057 1.9819 -0.8417 5 6 1.6365 2.1275 1.3095 6 7 2.2425 3.4654 1.3495 7 6 1.4823 4.5574 1.5643 8 8 0.2745 4.4563 1.6084 9 6 2.1330 5.9039 1.7494 10 6 3.0367 5.9564 2.9544 11 8 4.1864 6.3231 2.8346 12 7 2.5670 5.5959 4.1651 13 6 3.4728 5.5395 5.3152 14 6 1.1470 7.0811 1.6671 15 6 2.2361 7.8339 0.8814 16 6 2.7811 6.4563 0.4690 17 6 3.6928 3.5902 1.1504 18 6 4.0733 2.8889 -0.1573 19 6 3.5655 1.4455 -0.1238 20 1 4.0001 0.9274 0.7310 21 7 3.9563 0.7618 -1.3591 22 6 5.1948 0.1866 -1.4607 23 1 5.8833 0.2365 -0.6301 24 6 5.5650 -0.4618 -2.6310 25 7 4.7258 -0.5231 -3.6431 26 14 7.2547 -1.2459 -2.7700 27 1 8.0024 -1.0385 -1.5038 28 1 7.1056 -2.7014 -3.0236 29 1 7.9994 -0.6216 -3.8930 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 0.5512 2.2163 1.3559 36 1 1.9915 1.5379 2.1547 37 1 1.6291 5.3738 4.2751 38 1 4.2678 4.8208 5.1164 39 1 3.9075 6.5247 5.4839 40 1 2.9171 5.2305 6.2005 41 1 0.2556 6.8637 1.0788 42 1 0.9182 7.5275 2.6349 43 1 2.9173 8.4008 1.5159 44 1 1.8500 8.4185 0.0464 45 1 3.8696 6.3990 0.4708 46 1 2.3382 6.0666 -0.4476 47 1 3.9642 4.6443 1.0920 48 1 4.2176 3.1234 1.9840 49 1 3.6198 3.4147 -0.9975 50 1 5.1576 2.8905 -0.2689 51 1 3.3378 0.7166 -2.1049 52 1 4.9846 -0.9758 -4.4610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276763208.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:57 Heat of formation + Delta-G solvation = -63.671262 kcal Electronic energy + Delta-G solvation = -31758.040403 eV Core-core repulsion = 27757.347291 eV Total energy + Delta-G solvation = -4000.693111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.58118 -40.59250 -39.29891 -38.03494 -36.25855 -35.69035 -35.32333 -33.48830 -31.14276 -30.55634 -29.23916 -27.40927 -26.65733 -26.22099 -25.07589 -24.45978 -22.68010 -22.24389 -21.51619 -20.87456 -20.24111 -19.12483 -18.82971 -17.49988 -17.29286 -17.00078 -16.79059 -16.34542 -16.04633 -15.92104 -15.62998 -15.53804 -15.29658 -14.76525 -14.69109 -14.54168 -14.34632 -14.06414 -13.89063 -13.63767 -13.55227 -13.24990 -13.13327 -13.09992 -12.93779 -12.84660 -12.68648 -12.55686 -12.42411 -12.17406 -12.08055 -12.00917 -11.84585 -11.61405 -11.53257 -11.44771 -11.12578 -11.08273 -10.89135 -10.66996 -10.21940 -9.74758 -8.97162 -7.91857 -5.19314 1.25041 1.40556 1.47479 1.48258 1.57441 1.86533 2.08464 2.57083 3.25386 3.32837 3.41584 3.43756 3.60371 3.73519 3.75757 3.78373 3.96881 4.01141 4.18400 4.26893 4.30355 4.40366 4.44468 4.45962 4.60777 4.61647 4.62600 4.69443 4.75252 4.76886 4.77949 4.84205 4.92380 4.93701 4.95801 4.99151 5.00857 5.03407 5.13859 5.26995 5.31343 5.32777 5.35643 5.44308 5.49745 5.56280 5.62990 6.25700 6.29881 6.33307 6.94863 7.03512 7.36609 8.11827 8.35614 9.31694 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.003447 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.665633 B = 8121.142035 C = 8868.803846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C -0.092 4.092 4 H 0.054 0.946 5 C 0.125 3.875 6 N -0.599 5.599 7 C 0.536 3.464 8 O -0.557 6.557 9 C -0.139 4.139 10 C 0.547 3.453 11 O -0.552 6.552 12 N -0.722 5.722 13 C 0.084 3.916 14 C -0.094 4.094 15 C -0.129 4.129 16 C -0.116 4.116 17 C 0.111 3.889 18 C -0.138 4.138 19 C 0.181 3.819 20 H 0.045 0.955 21 N -0.729 5.729 22 C -0.231 4.231 23 H 0.075 0.925 24 C -0.073 4.073 25 N -0.969 5.969 26 Si 0.965 3.035 27 H -0.266 1.266 28 H -0.296 1.296 29 H -0.297 1.297 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.412 0.588 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.071 0.929 49 H 0.049 0.951 50 H 0.062 0.938 51 H 0.371 0.629 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.860 14.602 18.022 24.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.112 4.112 4 H 0.072 0.928 5 C 0.002 3.998 6 N -0.330 5.330 7 C 0.323 3.677 8 O -0.436 6.436 9 C -0.145 4.145 10 C 0.331 3.669 11 O -0.430 6.430 12 N -0.372 5.372 13 C -0.059 4.059 14 C -0.132 4.132 15 C -0.166 4.166 16 C -0.154 4.154 17 C -0.012 4.012 18 C -0.179 4.179 19 C 0.072 3.928 20 H 0.063 0.937 21 N -0.368 5.368 22 C -0.363 4.363 23 H 0.093 0.907 24 C -0.265 4.265 25 N -0.620 5.620 26 Si 0.795 3.205 27 H -0.191 1.191 28 H -0.223 1.223 29 H -0.225 1.225 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.247 0.753 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.113 0.887 45 H 0.101 0.899 46 H 0.109 0.891 47 H 0.114 0.886 48 H 0.089 0.911 49 H 0.068 0.932 50 H 0.080 0.920 51 H 0.203 0.797 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.465 14.704 18.073 24.789 hybrid contribution 0.610 -0.985 -1.010 1.537 sum -7.856 13.719 17.063 23.261 Atomic orbital electron populations 1.21771 0.94641 1.01945 1.01812 1.21353 0.96223 0.94986 1.01943 1.21619 0.95427 0.96677 0.97481 0.92795 1.21722 0.99633 0.81415 0.96985 1.48159 1.08507 1.06745 1.69561 1.20166 0.86559 0.85020 0.75911 1.90671 1.14426 1.85871 1.52635 1.22415 1.00181 0.94385 0.97567 1.19496 0.86876 0.76446 0.84032 1.90715 1.19103 1.47522 1.85679 1.45757 1.14208 1.68720 1.08558 1.21741 0.94356 1.02183 0.87581 1.22839 0.96519 0.91229 1.02637 1.22856 0.97380 0.95497 1.00888 1.22933 1.01517 0.97015 0.93964 1.21921 0.79261 1.02459 0.97568 1.22442 1.01107 0.98051 0.96322 1.20386 0.92666 0.90789 0.88975 0.93713 1.42554 1.15443 1.64886 1.13897 1.19601 0.92581 1.25735 0.98346 0.90733 1.25436 1.01435 1.03119 0.96505 1.69817 1.36943 1.50068 1.05168 0.85188 0.80354 0.77449 0.77490 1.19088 1.22338 1.22452 0.92124 0.91506 0.93586 0.93527 0.91716 0.88650 0.89966 0.75268 0.92946 0.92160 0.87282 0.88147 0.89177 0.89612 0.88729 0.89938 0.89129 0.88619 0.91057 0.93241 0.91979 0.79659 0.94245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.67 71.98 0.70 -3.05 16 2 C -0.11 -3.38 5.31 30.59 0.16 -3.22 16 3 C -0.09 -2.96 1.92 -10.72 -0.02 -2.98 16 4 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 5 C 0.12 3.32 5.34 86.36 0.46 3.78 16 6 N -0.60 -15.84 2.97 -818.92 -2.43 -18.27 16 7 C 0.54 13.77 6.48 87.66 0.57 14.34 16 8 O -0.56 -16.48 15.49 -3.02 -0.05 -16.53 16 9 C -0.14 -2.99 0.56 -53.15 -0.03 -3.02 16 10 C 0.55 11.96 5.29 87.66 0.46 12.43 16 11 O -0.55 -15.23 15.25 -3.01 -0.05 -15.28 16 12 N -0.72 -11.73 5.60 -484.52 -2.71 -14.44 16 13 C 0.08 1.06 10.71 127.77 1.37 2.43 16 14 C -0.09 -1.63 6.92 31.18 0.22 -1.42 16 15 C -0.13 -2.16 7.79 31.18 0.24 -1.92 16 16 C -0.12 -2.51 5.71 31.12 0.18 -2.33 16 17 C 0.11 3.07 5.57 86.36 0.48 3.55 16 18 C -0.14 -4.76 5.66 30.67 0.17 -4.59 16 19 C 0.18 6.82 2.19 45.02 0.10 6.92 16 20 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 21 N -0.73 -35.48 4.33 -322.81 -1.40 -36.88 16 22 C -0.23 -12.44 9.93 84.03 0.83 -11.61 16 23 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 24 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 25 N -0.97 -58.82 13.06 21.65 0.28 -58.53 16 26 Si 0.97 45.90 29.55 68.60 2.03 47.93 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 29 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.50 6.70 -2.38 -0.02 1.48 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.84 7.22 -2.39 -0.02 1.82 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.10 2.54 5.72 -2.39 -0.01 2.52 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.41 5.48 8.71 -92.71 -0.81 4.67 16 38 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.10 1.85 7.64 -2.39 -0.02 1.84 16 42 H 0.09 1.27 8.09 -2.38 -0.02 1.25 16 43 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.08 1.97 6.40 -2.39 -0.02 1.96 16 46 H 0.09 2.02 8.09 -2.39 -0.02 2.00 16 47 H 0.10 2.58 3.31 -2.39 -0.01 2.58 16 48 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 51 H 0.37 19.83 7.51 -92.71 -0.70 19.14 16 52 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -67.92 401.59 1.46 -66.47 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: -0.58 Total: 39.86 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 6.36 Total: 5.68 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -6.26 Total: -128.13 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.09 Total: -31.81 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -67.92 1.46 -66.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276763208.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.794 kcal (2) G-P(sol) polarization free energy of solvation -67.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds