Wall clock time and date at job start Tue Mar 31 2020 20:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46854 * 2 1 4 4 C 1.53003 * 109.46785 * 240.00204 * 2 1 3 5 5 H 1.09000 * 115.55294 * 40.35945 * 4 2 1 6 6 C 1.53003 * 117.49579 * 186.02625 * 4 2 1 7 7 C 1.52998 * 59.99998 * 107.49242 * 6 4 2 8 8 H 1.08999 * 117.50272 * 107.48735 * 7 6 4 9 9 C 1.50699 * 117.49681 * 252.51306 * 7 6 4 10 10 O 1.21286 * 120.00245 * 105.35279 * 9 7 6 11 11 N 1.34780 * 120.00181 * 285.35164 * 9 7 6 12 12 C 1.46493 * 120.00458 * 180.02562 * 11 9 7 13 13 H 1.09004 * 112.84913 * 336.19471 * 12 11 9 14 14 C 1.53779 * 113.61598 * 107.50015 * 12 11 9 15 15 C 1.53785 * 87.07926 * 89.12069 * 14 12 11 16 16 H 1.09002 * 113.60925 * 270.88724 * 15 14 12 17 17 C 1.53000 * 113.61460 * 139.98357 * 15 14 12 18 18 N 1.46900 * 109.47237 * 87.50093 * 17 15 14 19 19 C 1.46897 * 111.00124 * 179.97438 * 18 17 15 20 20 C 1.50698 * 109.47262 * 179.97438 * 19 18 17 21 21 O 1.21291 * 120.00029 * 0.02562 * 20 19 18 22 22 N 1.34770 * 119.99903 * 179.97438 * 20 19 18 23 23 C 1.37105 * 119.99991 * 180.02562 * 22 20 19 24 24 H 1.07996 * 119.99512 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99740 * 180.02562 * 23 22 20 26 26 N 1.31406 * 120.00534 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99486 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.47240 * 59.99997 * 27 25 23 29 29 H 1.48505 * 109.47031 * 179.97438 * 27 25 23 30 30 H 1.48498 * 109.47146 * 299.99857 * 27 25 23 31 31 C 1.53779 * 87.08191 * 25.43016 * 15 14 12 32 32 H 1.08998 * 109.47625 * 57.39566 * 1 2 3 33 33 H 1.09003 * 109.46936 * 177.39243 * 1 2 3 34 34 H 1.08994 * 109.47040 * 297.39106 * 1 2 3 35 35 H 1.08991 * 109.47316 * 120.00345 * 2 1 3 36 36 H 1.08996 * 109.47140 * 60.00072 * 3 2 1 37 37 H 1.09002 * 109.46906 * 180.02562 * 3 2 1 38 38 H 1.09004 * 109.47257 * 300.00006 * 3 2 1 39 39 H 1.09001 * 117.49677 * 214.97489 * 6 4 2 40 40 H 1.08993 * 117.50091 * 359.97438 * 6 4 2 41 41 H 0.97001 * 119.99580 * 0.02562 * 11 9 7 42 42 H 1.09004 * 113.61635 * 203.66801 * 14 12 11 43 43 H 1.08991 * 113.61792 * 334.57089 * 14 12 11 44 44 H 1.09001 * 109.46695 * 207.49728 * 17 15 14 45 45 H 1.08995 * 109.46836 * 327.49847 * 17 15 14 46 46 H 1.00901 * 111.00019 * 56.04338 * 18 17 15 47 47 H 1.08997 * 109.47078 * 300.00308 * 19 18 17 48 48 H 1.09001 * 109.46971 * 59.99778 * 19 18 17 49 49 H 0.97002 * 120.00525 * 0.02562 * 22 20 19 50 50 H 0.96997 * 120.00501 * 180.02562 * 26 25 23 51 51 H 1.09001 * 113.61772 * 220.01894 * 31 15 14 52 52 H 1.09005 * 113.61017 * 89.11373 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.4901 -0.5162 -2.1679 6 6 3.5479 -0.9527 -1.3653 7 6 2.6142 -2.1278 -1.0682 8 1 2.4420 -2.8485 -1.8675 9 6 2.6341 -2.6967 0.3272 10 8 1.7207 -2.4637 1.0903 11 7 3.6671 -3.4646 0.7271 12 6 3.6862 -4.0182 2.0833 13 1 3.0798 -3.4437 2.7836 14 6 3.4217 -5.5322 2.1345 15 6 4.9395 -5.7231 1.9779 16 1 5.2679 -5.7773 0.9399 17 6 5.5078 -6.8506 2.8420 18 7 5.4152 -8.1217 2.1115 19 6 5.9534 -9.2295 2.9121 20 6 5.8411 -10.5140 2.1321 21 8 5.3604 -10.5072 1.0185 22 7 6.2757 -11.6701 2.6714 23 6 6.1740 -12.8386 1.9616 24 1 5.7452 -12.8327 0.9704 25 6 6.6216 -14.0307 2.5179 26 7 7.1428 -14.0380 3.7242 27 14 6.4823 -15.6228 1.5510 28 1 7.2544 -15.5041 0.2880 29 1 7.0270 -16.7426 2.3602 30 1 5.0555 -15.8875 1.2359 31 6 5.1003 -4.3272 2.6026 32 1 -0.3634 0.5537 -0.8657 33 1 -0.3633 -1.0266 -0.0468 34 1 -0.3633 0.4728 0.9124 35 1 1.8933 -0.5138 0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.1299 1.4425 -0.0005 38 1 1.6766 1.9564 -0.8900 39 1 3.9900 -0.9005 -2.3602 40 1 4.1766 -0.5908 -0.5519 41 1 4.3978 -3.6507 0.1170 42 1 3.0351 -5.8757 3.0941 43 1 2.8451 -5.9036 1.2874 44 1 6.5519 -6.6399 3.0735 45 1 4.9374 -6.9213 3.7681 46 1 5.8821 -8.0608 1.2191 47 1 7.0006 -9.0351 3.1438 48 1 5.3864 -9.3169 3.8389 49 1 6.6605 -11.6755 3.5619 50 1 7.4556 -14.8700 4.1124 51 1 5.8789 -3.7258 2.1333 52 1 5.1727 -4.3413 3.6902 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277062348.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:59 Heat of formation + Delta-G solvation = -63.496325 kcal Electronic energy + Delta-G solvation = -28265.692138 eV Core-core repulsion = 24265.006613 eV Total energy + Delta-G solvation = -4000.685525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.51981 -40.27166 -39.89216 -37.99676 -36.52692 -35.77086 -34.61217 -33.71969 -33.25243 -29.82840 -27.99649 -27.38552 -26.59601 -25.89014 -24.79161 -23.93920 -22.89227 -21.57735 -21.14875 -20.61032 -20.17588 -19.82747 -18.00486 -17.68760 -16.99507 -16.95986 -16.89869 -16.47143 -16.09940 -15.83671 -15.51253 -15.35964 -15.18515 -15.01337 -14.83190 -14.48168 -14.24920 -14.08411 -13.90355 -13.50684 -13.44383 -13.27626 -13.13663 -13.05460 -12.97261 -12.88384 -12.57672 -12.43934 -12.14377 -12.12796 -12.06746 -11.82054 -11.58389 -11.50731 -11.41143 -11.15703 -11.08937 -10.93568 -10.63511 -10.33534 -10.02098 -9.94383 -9.25299 -8.46865 -5.95937 1.39701 1.41601 1.52589 1.58580 2.05204 2.13628 2.29145 2.76242 2.93536 3.20354 3.48119 3.58506 3.60309 3.79519 3.82849 3.89203 3.93451 4.03334 4.13271 4.26589 4.32120 4.44671 4.46305 4.50392 4.54790 4.55554 4.65822 4.74983 4.75875 4.83190 4.86186 4.86785 4.89233 4.93577 4.98812 5.04970 5.05758 5.13751 5.21438 5.23055 5.30058 5.33624 5.40195 5.47822 5.59518 5.71387 5.90697 6.13421 6.45769 6.58143 6.59967 7.12097 7.28499 7.55940 8.11380 8.70238 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028641 B = 0.001500 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.379821 B =18661.293495 C =19047.195020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C -0.140 4.140 4 C -0.119 4.119 5 H 0.122 0.878 6 C -0.137 4.137 7 C -0.199 4.199 8 H 0.142 0.858 9 C 0.540 3.460 10 O -0.568 6.568 11 N -0.698 5.698 12 C 0.117 3.883 13 H 0.086 0.914 14 C -0.141 4.141 15 C -0.099 4.099 16 H 0.091 0.909 17 C 0.070 3.930 18 N -0.684 5.684 19 C 0.065 3.935 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.337 4.337 24 H 0.078 0.922 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.271 1.271 29 H -0.270 1.270 30 H -0.273 1.273 31 C -0.119 4.119 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.413 0.587 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.044 0.956 45 H 0.076 0.924 46 H 0.343 0.657 47 H 0.067 0.933 48 H 0.101 0.899 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.089 0.911 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 30.650 -4.916 31.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.098 4.098 3 C -0.197 4.197 4 C -0.138 4.138 5 H 0.140 0.860 6 C -0.174 4.174 7 C -0.219 4.219 8 H 0.160 0.840 9 C 0.328 3.672 10 O -0.448 6.448 11 N -0.349 5.349 12 C 0.011 3.989 13 H 0.104 0.896 14 C -0.180 4.180 15 C -0.118 4.118 16 H 0.109 0.891 17 C -0.058 4.058 18 N -0.316 5.316 19 C -0.067 4.067 20 C 0.224 3.776 21 O -0.511 6.511 22 N -0.210 5.210 23 C -0.467 4.467 24 H 0.096 0.904 25 C -0.211 4.211 26 N -0.560 5.560 27 Si 0.817 3.183 28 H -0.196 1.196 29 H -0.194 1.194 30 H -0.199 1.199 31 C -0.158 4.158 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.144 0.856 40 H 0.116 0.884 41 H 0.250 0.750 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.161 0.839 47 H 0.085 0.915 48 H 0.119 0.881 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.108 0.892 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.641 30.544 -4.781 31.262 hybrid contribution 1.122 -1.343 -0.139 1.756 sum -3.519 29.200 -4.920 29.820 Atomic orbital electron populations 1.21645 0.95210 1.00826 1.01351 1.20872 0.96070 0.96119 0.96710 1.21784 1.01053 0.95016 1.01882 1.22479 0.96872 0.94205 1.00199 0.85981 1.23152 0.92456 0.97250 1.04578 1.22328 1.10628 0.94090 0.94892 0.84031 1.20165 0.81188 0.77302 0.88591 1.90662 1.37359 1.60266 1.56475 1.45637 1.23913 1.50699 1.14667 1.21825 0.99008 0.93849 0.84204 0.89576 1.23393 0.96858 0.95588 1.02126 1.22515 0.95560 0.93927 0.99803 0.89074 1.22065 0.99595 0.87179 0.96987 1.60073 1.62070 1.03147 1.06349 1.21524 0.99834 0.88680 0.96689 1.20935 0.82546 0.86185 0.87949 1.90484 1.50606 1.87243 1.22762 1.41934 1.54910 1.06243 1.17941 1.19648 1.40233 0.85844 1.00968 0.90363 1.26033 0.95845 1.02167 0.97094 1.69659 1.41021 1.29726 1.15628 0.84990 0.78682 0.76702 0.77959 1.19613 1.19400 1.19854 1.23263 0.95291 0.94837 1.02370 0.91900 0.94258 0.93409 0.91609 0.93082 0.92374 0.91845 0.85561 0.88399 0.75016 0.89467 0.93273 0.93773 0.90586 0.83854 0.91526 0.88120 0.76962 0.91266 0.89205 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.19 71.98 0.66 -1.59 16 2 C -0.08 -1.28 2.33 -10.79 -0.03 -1.30 16 3 C -0.14 -1.70 9.09 71.98 0.65 -1.04 16 4 C -0.12 -1.51 5.06 -10.79 -0.05 -1.56 16 5 H 0.12 1.24 8.14 -2.39 -0.02 1.23 16 6 C -0.14 -1.21 9.54 30.59 0.29 -0.91 16 7 C -0.20 -2.68 6.16 -11.54 -0.07 -2.75 16 8 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 9 C 0.54 10.58 6.90 87.66 0.60 11.19 16 10 O -0.57 -15.62 13.88 -3.05 -0.04 -15.66 16 11 N -0.70 -10.97 5.26 -440.04 -2.32 -13.28 16 12 C 0.12 2.03 4.32 45.52 0.20 2.22 16 13 H 0.09 1.78 7.46 -2.38 -0.02 1.77 16 14 C -0.14 -2.93 7.43 31.12 0.23 -2.70 16 15 C -0.10 -1.74 3.78 -10.27 -0.04 -1.78 16 16 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 17 C 0.07 1.48 5.52 86.30 0.48 1.96 16 18 N -0.68 -21.01 6.13 -517.95 -3.17 -24.18 16 19 C 0.07 2.22 6.17 85.56 0.53 2.74 16 20 C 0.44 20.92 7.82 87.66 0.69 21.60 16 21 O -0.62 -34.96 15.78 -3.06 -0.05 -35.00 16 22 N -0.57 -29.63 5.29 -306.99 -1.62 -31.25 16 23 C -0.34 -19.33 9.68 84.04 0.81 -18.52 16 24 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 25 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 26 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 27 Si 0.99 43.03 29.55 68.60 2.03 45.06 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 29 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 30 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 31 C -0.12 -1.51 7.39 31.12 0.23 -1.28 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 1.44 5.22 -2.39 -0.01 1.42 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 0.63 7.72 -2.39 -0.02 0.61 16 38 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.10 0.90 7.99 -2.39 -0.02 0.88 16 41 H 0.41 4.52 8.70 -92.71 -0.81 3.71 16 42 H 0.09 1.85 7.90 -2.38 -0.02 1.83 16 43 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.08 1.57 7.84 -2.39 -0.02 1.55 16 46 H 0.34 10.98 8.43 -89.69 -0.76 10.22 16 47 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 49 H 0.40 19.40 7.90 -92.71 -0.73 18.66 16 50 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 51 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.11 1.17 8.10 -2.38 -0.02 1.15 16 Total: -1.00 -72.81 422.83 -0.60 -73.42 By element: Atomic # 1 Polarization: 45.52 SS G_CDS: -1.36 Total: 44.16 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 5.65 Total: 6.14 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -6.83 Total: -118.11 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.09 Total: -50.66 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -72.81 -0.60 -73.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277062348.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.921 kcal (2) G-P(sol) polarization free energy of solvation -72.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds