Wall clock time and date at job start Tue Mar 31 2020 20:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46735 * 2 1 4 4 C 1.52998 * 109.47057 * 119.99800 * 2 1 3 5 5 H 1.08990 * 115.56470 * 325.69153 * 4 2 1 6 6 C 1.53000 * 117.49463 * 111.38102 * 4 2 1 7 7 C 1.52997 * 60.00347 * 107.48750 * 6 4 2 8 8 H 1.09001 * 117.51673 * 252.52204 * 7 6 4 9 9 C 1.50697 * 117.49950 * 107.48460 * 7 6 4 10 10 O 1.21279 * 120.00470 * 291.37606 * 9 7 6 11 11 N 1.34779 * 119.99671 * 111.38467 * 9 7 6 12 12 C 1.46501 * 119.99809 * 180.02562 * 11 9 7 13 13 H 1.08992 * 112.85132 * 23.79736 * 12 11 9 14 14 C 1.53780 * 113.61454 * 155.00014 * 12 11 9 15 15 C 1.53774 * 87.08576 * 89.11192 * 14 12 11 16 16 H 1.09004 * 113.61637 * 270.80156 * 15 14 12 17 17 C 1.52995 * 113.62006 * 139.97982 * 15 14 12 18 18 N 1.46892 * 109.47700 * 175.00055 * 17 15 14 19 19 C 1.46904 * 111.00114 * 180.02562 * 18 17 15 20 20 C 1.50705 * 109.47286 * 180.02562 * 19 18 17 21 21 O 1.21298 * 119.99376 * 359.97438 * 20 19 18 22 22 N 1.34771 * 120.00383 * 180.02562 * 20 19 18 23 23 C 1.37096 * 120.00130 * 179.97438 * 22 20 19 24 24 H 1.07995 * 120.00404 * 359.97438 * 23 22 20 25 25 C 1.38949 * 119.99696 * 179.97438 * 23 22 20 26 26 N 1.31404 * 120.00440 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99735 * 179.97438 * 25 23 22 28 28 H 1.48492 * 109.47477 * 90.00184 * 27 25 23 29 29 H 1.48503 * 109.47068 * 210.00049 * 27 25 23 30 30 H 1.48507 * 109.47223 * 329.99604 * 27 25 23 31 31 C 1.53782 * 113.60919 * 252.49254 * 12 11 9 32 32 H 1.09003 * 109.47441 * 299.99717 * 1 2 3 33 33 H 1.09000 * 109.47749 * 60.00300 * 1 2 3 34 34 H 1.09002 * 109.47268 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.46937 * 240.00343 * 2 1 3 36 36 H 1.09000 * 109.46771 * 180.02562 * 3 2 1 37 37 H 1.09004 * 109.46979 * 299.99588 * 3 2 1 38 38 H 1.08993 * 109.47403 * 60.00213 * 3 2 1 39 39 H 1.09002 * 117.49696 * 214.97963 * 6 4 2 40 40 H 1.09002 * 117.50343 * 359.97438 * 6 4 2 41 41 H 0.97001 * 120.00143 * 359.97438 * 11 9 7 42 42 H 1.09001 * 113.61518 * 203.66396 * 14 12 11 43 43 H 1.09007 * 113.61357 * 334.47963 * 14 12 11 44 44 H 1.09002 * 109.47233 * 295.00963 * 17 15 14 45 45 H 1.09003 * 109.47133 * 54.99754 * 17 15 14 46 46 H 1.00900 * 110.99948 * 303.95586 * 18 17 15 47 47 H 1.09001 * 109.47210 * 299.99968 * 19 18 17 48 48 H 1.09001 * 109.47398 * 59.99914 * 19 18 17 49 49 H 0.97002 * 119.99814 * 359.97438 * 22 20 19 50 50 H 0.97002 * 120.00321 * 179.97438 * 26 25 23 51 51 H 1.09002 * 113.61710 * 25.43377 * 31 12 11 52 52 H 1.09006 * 113.61360 * 156.33999 * 31 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.4310 -0.5983 2.1448 6 6 2.7419 -2.0662 1.0513 7 6 3.5550 -0.8281 1.4342 8 1 4.1883 -0.3841 0.6661 9 6 4.0911 -0.7552 2.8408 10 8 3.3288 -0.6168 3.7739 11 7 5.4176 -0.8438 3.0617 12 6 5.9387 -0.7736 4.4292 13 1 5.2011 -1.0608 5.1784 14 6 7.2994 -1.4680 4.6063 15 6 7.9457 -0.1232 4.2340 16 1 8.1080 0.0018 3.1634 17 6 9.1851 0.2123 5.0659 18 7 9.7956 1.4483 4.5585 19 6 10.9917 1.8019 5.3347 20 6 11.5888 3.0724 4.7866 21 8 11.0693 3.6283 3.8419 22 7 12.7005 3.5903 5.3454 23 6 13.2440 4.7459 4.8464 24 1 12.7816 5.2409 4.0053 25 6 14.3898 5.2801 5.4229 26 7 14.9528 4.6775 6.4460 27 14 15.1308 6.8541 4.7426 28 1 14.5357 8.0228 5.4391 29 1 16.5998 6.8439 4.9597 30 1 14.8461 6.9470 3.2880 31 6 6.6599 0.5470 4.7464 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 3.1299 1.4425 -0.0005 37 1 1.6765 1.9563 -0.8901 38 1 1.6766 1.9563 0.8899 39 1 2.5947 -2.8282 1.8167 40 1 2.8400 -2.4375 0.0312 41 1 6.0273 -0.9548 2.3155 42 1 7.5002 -1.7801 5.6312 43 1 7.4840 -2.2588 3.8791 44 1 8.8968 0.3507 6.1079 45 1 9.9035 -0.6042 4.9932 46 1 10.0131 1.3675 3.5765 47 1 10.7162 1.9512 6.3787 48 1 11.7224 0.9963 5.2634 49 1 13.1161 3.1455 6.1006 50 1 15.7530 5.0503 6.8482 51 1 6.3289 1.3840 4.1315 52 1 6.6860 0.7859 5.8096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277062349.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:02 Heat of formation + Delta-G solvation = -69.771977 kcal Electronic energy + Delta-G solvation = -27997.717377 eV Core-core repulsion = 23996.759719 eV Total energy + Delta-G solvation = -4000.957658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45744 -40.25438 -39.88122 -38.27177 -36.54332 -35.77501 -34.37804 -33.95472 -33.25795 -29.85486 -28.04295 -27.41583 -26.60836 -25.99277 -24.85861 -23.78956 -22.89474 -21.50323 -21.15565 -20.63294 -20.18605 -19.83301 -18.39232 -17.80734 -17.10096 -16.95813 -16.50804 -16.29528 -16.14264 -15.91409 -15.58061 -15.42287 -15.36462 -15.10047 -14.86435 -14.50525 -14.14306 -13.99970 -13.69105 -13.52275 -13.46883 -13.38561 -13.28178 -13.06103 -13.03064 -12.89167 -12.57934 -12.42647 -12.18690 -12.12521 -12.06481 -11.82765 -11.57825 -11.51518 -11.42340 -11.24029 -11.17017 -11.04045 -10.80936 -10.33931 -10.03608 -10.02044 -9.25317 -8.47190 -5.96125 1.37785 1.41544 1.44962 1.54229 2.05020 2.10249 2.28948 2.83778 2.93372 3.20154 3.47666 3.57459 3.59772 3.75433 3.79918 3.83710 3.90174 4.02576 4.09159 4.19978 4.32025 4.38679 4.43679 4.45962 4.53800 4.55003 4.65286 4.66476 4.74996 4.82533 4.82927 4.85318 4.88101 4.91251 4.95191 5.02734 5.06546 5.12421 5.21431 5.22173 5.27178 5.29762 5.40320 5.41881 5.52783 5.66867 5.90622 6.13351 6.45799 6.53970 6.59832 7.12095 7.23359 7.55862 8.11300 8.70165 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017119 B = 0.001581 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.201706 B =17710.915830 C =18996.381092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.061 4.061 3 C -0.149 4.149 4 C -0.120 4.120 5 H 0.091 0.909 6 C -0.130 4.130 7 C -0.194 4.194 8 H 0.144 0.856 9 C 0.539 3.461 10 O -0.588 6.588 11 N -0.697 5.697 12 C 0.115 3.885 13 H 0.085 0.915 14 C -0.118 4.118 15 C -0.099 4.099 16 H 0.092 0.908 17 C 0.070 3.930 18 N -0.684 5.684 19 C 0.065 3.935 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.336 4.336 24 H 0.078 0.922 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.272 1.272 29 H -0.269 1.269 30 H -0.273 1.273 31 C -0.141 4.141 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.091 0.909 40 H 0.131 0.869 41 H 0.415 0.585 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.045 0.955 46 H 0.343 0.657 47 H 0.101 0.899 48 H 0.067 0.933 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.048 0.952 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.928 -18.767 -9.929 30.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 C -0.206 4.206 4 C -0.139 4.139 5 H 0.109 0.891 6 C -0.167 4.167 7 C -0.215 4.215 8 H 0.162 0.838 9 C 0.328 3.672 10 O -0.468 6.468 11 N -0.347 5.347 12 C 0.009 3.991 13 H 0.103 0.897 14 C -0.157 4.157 15 C -0.118 4.118 16 H 0.110 0.890 17 C -0.058 4.058 18 N -0.316 5.316 19 C -0.067 4.067 20 C 0.224 3.776 21 O -0.511 6.511 22 N -0.210 5.210 23 C -0.466 4.466 24 H 0.096 0.904 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.817 3.183 28 H -0.197 1.197 29 H -0.194 1.194 30 H -0.198 1.198 31 C -0.180 4.180 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.149 0.851 41 H 0.252 0.748 42 H 0.126 0.874 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.162 0.838 47 H 0.119 0.881 48 H 0.085 0.915 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.067 0.933 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.030 -17.850 -9.405 30.619 hybrid contribution 1.692 0.332 -0.065 1.726 sum -21.338 -17.518 -9.470 29.187 Atomic orbital electron populations 1.21806 0.94293 1.02221 1.01892 1.20744 0.96258 0.95549 0.95424 1.21850 1.01109 0.96034 1.01640 1.22444 0.91403 0.99859 1.00154 0.89088 1.23177 0.99579 0.89898 1.04079 1.22314 0.96799 1.07998 0.94410 0.83843 1.20221 0.82156 0.74340 0.90516 1.90673 1.58421 1.51330 1.46380 1.45554 1.06954 1.73160 1.09064 1.21857 0.95732 0.97312 0.84215 0.89703 1.23262 0.92108 0.96129 1.04185 1.22512 0.92938 0.96342 0.99960 0.88993 1.22063 0.95297 0.89119 0.99353 1.60070 1.28157 1.36078 1.07336 1.21528 0.92374 0.93645 0.99183 1.20941 0.82123 0.88841 0.85694 1.90487 1.63642 1.64883 1.32074 1.41936 1.24269 1.23618 1.31221 1.19678 1.09163 1.02319 1.15430 0.90375 1.26032 0.96536 1.02390 0.96212 1.69666 1.21804 1.41418 1.23166 0.84927 0.77552 0.77430 0.78409 1.19749 1.19415 1.19768 1.23398 0.96202 0.96659 1.01705 0.93562 0.91574 0.91978 0.89283 0.92705 0.91573 0.94010 0.89012 0.85102 0.74828 0.87402 0.89112 0.90572 0.93712 0.83843 0.88115 0.91505 0.76961 0.91276 0.93266 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.17 71.98 0.66 -0.84 16 2 C -0.06 -0.68 3.07 -10.80 -0.03 -0.71 16 3 C -0.15 -1.91 9.03 71.98 0.65 -1.26 16 4 C -0.12 -1.74 4.66 -10.79 -0.05 -1.79 16 5 H 0.09 1.83 7.64 -2.39 -0.02 1.81 16 6 C -0.13 -1.40 9.88 30.59 0.30 -1.09 16 7 C -0.19 -2.73 5.39 -11.54 -0.06 -2.79 16 8 H 0.14 1.42 7.61 -2.39 -0.02 1.41 16 9 C 0.54 11.24 7.61 87.66 0.67 11.91 16 10 O -0.59 -17.56 15.86 -3.03 -0.05 -17.61 16 11 N -0.70 -11.45 5.26 -440.04 -2.32 -13.77 16 12 C 0.11 2.06 4.32 45.52 0.20 2.26 16 13 H 0.08 1.83 7.46 -2.39 -0.02 1.82 16 14 C -0.12 -1.53 7.39 31.12 0.23 -1.30 16 15 C -0.10 -1.75 3.78 -10.27 -0.04 -1.79 16 16 H 0.09 1.61 8.13 -2.38 -0.02 1.59 16 17 C 0.07 1.48 5.52 86.30 0.48 1.96 16 18 N -0.68 -21.01 6.13 -517.93 -3.17 -24.18 16 19 C 0.07 2.21 6.17 85.56 0.53 2.74 16 20 C 0.44 20.92 7.82 87.66 0.69 21.61 16 21 O -0.62 -34.96 15.78 -3.09 -0.05 -35.01 16 22 N -0.57 -29.63 5.29 -306.99 -1.62 -31.26 16 23 C -0.34 -19.28 9.68 84.04 0.81 -18.46 16 24 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 25 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 26 N -0.92 -49.70 13.05 21.66 0.28 -49.41 16 27 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 29 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 30 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 31 C -0.14 -2.98 7.43 31.12 0.23 -2.75 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 0.70 7.90 -2.39 -0.02 0.68 16 36 H 0.05 0.71 7.29 -2.39 -0.02 0.69 16 37 H 0.07 0.70 8.14 -2.38 -0.02 0.69 16 38 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.13 0.73 8.05 -2.39 -0.02 0.71 16 41 H 0.41 4.57 8.70 -92.71 -0.81 3.76 16 42 H 0.11 1.19 8.10 -2.39 -0.02 1.17 16 43 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.08 1.57 7.84 -2.39 -0.02 1.56 16 45 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.34 10.97 8.43 -89.69 -0.76 10.21 16 47 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 48 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.40 19.40 7.90 -92.71 -0.73 18.66 16 50 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 51 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.09 1.90 7.90 -2.38 -0.02 1.88 16 Total: -1.00 -74.30 426.64 -0.54 -74.84 By element: Atomic # 1 Polarization: 45.13 SS G_CDS: -1.36 Total: 43.77 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 5.72 Total: 7.53 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -6.83 Total: -118.62 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -0.10 Total: -52.62 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.30 -0.54 -74.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277062349.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.068 kcal (2) G-P(sol) polarization free energy of solvation -74.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds