Wall clock time and date at job start Tue Mar 31 2020 20:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 C 1.53003 * 109.47384 * 120.00416 * 2 1 3 5 5 H 1.09003 * 115.55779 * 274.31031 * 4 2 1 6 6 C 1.53066 * 117.49369 * 128.60009 * 4 2 1 7 7 C 1.52997 * 117.49647 * 59.99777 * 4 2 1 8 8 H 1.08995 * 117.49919 * 359.97438 * 7 4 2 9 9 C 1.50702 * 117.49647 * 214.97923 * 7 4 2 10 10 O 1.21278 * 119.99973 * 0.09149 * 9 7 4 11 11 N 1.34779 * 120.00083 * 180.08856 * 9 7 4 12 12 C 1.46494 * 120.00015 * 179.97438 * 11 9 7 13 13 H 1.08996 * 112.91136 * 336.25334 * 12 11 9 14 14 C 1.53786 * 113.61224 * 107.50683 * 12 11 9 15 15 C 1.53781 * 87.08233 * 89.11291 * 14 12 11 16 16 H 1.08993 * 113.69206 * 270.87514 * 15 14 12 17 17 C 1.52998 * 113.61150 * 139.97813 * 15 14 12 18 18 N 1.46907 * 109.47021 * 87.50365 * 17 15 14 19 19 C 1.46895 * 110.99969 * 179.97438 * 18 17 15 20 20 C 1.50700 * 109.47051 * 180.02562 * 19 18 17 21 21 O 1.21292 * 119.99931 * 0.02562 * 20 19 18 22 22 N 1.34784 * 119.99961 * 180.02562 * 20 19 18 23 23 C 1.37090 * 119.99722 * 179.97438 * 22 20 19 24 24 H 1.07999 * 120.00228 * 0.02562 * 23 22 20 25 25 C 1.38955 * 119.99996 * 179.97438 * 23 22 20 26 26 N 1.31411 * 119.99860 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00198 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47088 * 90.00074 * 27 25 23 29 29 H 1.48495 * 109.47293 * 210.00276 * 27 25 23 30 30 H 1.48502 * 109.47297 * 330.00060 * 27 25 23 31 31 C 1.53781 * 87.07995 * 25.43365 * 15 14 12 32 32 H 1.08996 * 109.46804 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46929 * 299.99426 * 1 2 3 34 34 H 1.09000 * 109.47022 * 59.99873 * 1 2 3 35 35 H 1.09000 * 109.46929 * 240.00574 * 2 1 3 36 36 H 1.08994 * 109.47202 * 179.97438 * 3 2 1 37 37 H 1.08999 * 109.47621 * 300.00394 * 3 2 1 38 38 H 1.09000 * 109.46768 * 60.00476 * 3 2 1 39 39 H 1.09002 * 117.50904 * 145.03418 * 6 4 2 40 40 H 1.09004 * 117.51896 * 359.97438 * 6 4 2 41 41 H 0.97005 * 119.99859 * 0.02562 * 11 9 7 42 42 H 1.09001 * 113.61200 * 334.56665 * 14 12 11 43 43 H 1.09001 * 113.61370 * 203.66414 * 14 12 11 44 44 H 1.09003 * 109.47314 * 327.50475 * 17 15 14 45 45 H 1.09004 * 109.47259 * 207.50413 * 17 15 14 46 46 H 1.00902 * 110.99728 * 56.04647 * 18 17 15 47 47 H 1.09004 * 109.47210 * 60.00310 * 19 18 17 48 48 H 1.08997 * 109.47605 * 300.00670 * 19 18 17 49 49 H 0.96995 * 120.00015 * 359.72695 * 22 20 19 50 50 H 0.97000 * 120.00310 * 180.02562 * 26 25 23 51 51 H 1.08996 * 113.61859 * 89.11596 * 31 15 14 52 52 H 1.09001 * 113.61348 * 220.01504 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 2.1272 -0.1062 2.1448 6 6 3.0743 -1.8322 1.0509 7 6 1.6358 -2.1853 1.4341 8 1 1.0061 -2.6344 0.6661 9 6 1.3886 -2.6665 2.8407 10 8 1.5106 -1.9013 3.7736 11 7 1.0317 -3.9472 3.0618 12 6 0.7919 -4.4151 4.4292 13 1 1.3061 -3.8146 5.1794 14 6 -0.6935 -4.6570 4.7458 15 6 -0.4879 -6.0924 4.2338 16 1 -0.6591 -6.2042 3.1632 17 6 -1.2161 -7.1500 5.0657 18 7 -2.5845 -7.3157 4.5577 19 6 -3.3154 -8.3263 5.3338 20 6 -4.7115 -8.4687 4.7844 21 8 -5.0628 -7.7950 3.8389 22 7 -5.5696 -9.3448 5.3436 23 6 -6.8397 -9.4740 4.8441 24 1 -7.1526 -8.8741 4.0022 25 6 -7.7243 -10.3775 5.4202 26 7 -7.3435 -11.1078 6.4442 27 14 -9.4547 -10.5541 4.7392 28 1 -9.4666 -11.5971 3.6822 29 1 -10.3794 -10.9470 5.8327 30 1 -9.8938 -9.2586 4.1612 31 6 0.9951 -5.9291 4.6067 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8933 -0.5137 -0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6767 1.9563 0.8900 39 1 3.8419 -1.9479 1.8162 40 1 3.3909 -2.0493 0.0307 41 1 0.9343 -4.5594 2.3156 42 1 -1.3728 -4.0670 4.1305 43 1 -0.9278 -4.6020 5.8089 44 1 -1.2514 -6.8318 6.1076 45 1 -0.6843 -8.0987 4.9933 46 1 -2.5801 -7.5478 3.5757 47 1 -3.3653 -8.0166 6.3777 48 1 -2.7981 -9.2830 5.2630 49 1 -5.2874 -9.8864 6.0971 50 1 -7.9609 -11.7388 6.8462 51 1 1.2224 -6.2219 5.6317 52 1 1.6789 -6.3662 3.8791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277062350.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:05 Heat of formation + Delta-G solvation = -69.731337 kcal Electronic energy + Delta-G solvation = -27997.390684 eV Core-core repulsion = 23996.434788 eV Total energy + Delta-G solvation = -4000.955896 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45696 -40.25452 -39.88075 -38.26965 -36.54304 -35.77525 -34.37799 -33.95389 -33.25716 -29.85474 -28.04299 -27.41522 -26.60836 -25.99138 -24.85788 -23.79126 -22.89502 -21.50331 -21.15580 -20.63211 -20.18580 -19.83319 -18.39204 -17.80833 -17.10134 -16.95798 -16.50772 -16.29542 -16.14168 -15.91409 -15.57982 -15.42367 -15.36536 -15.10011 -14.86414 -14.50597 -14.14221 -13.99953 -13.69078 -13.52293 -13.46869 -13.38611 -13.28285 -13.06101 -13.03070 -12.88867 -12.58037 -12.42646 -12.18696 -12.13020 -12.06546 -11.82831 -11.57804 -11.51327 -11.42185 -11.24016 -11.16981 -11.04067 -10.80814 -10.34009 -10.03563 -10.01989 -9.25331 -8.47206 -5.96090 1.37677 1.41525 1.44995 1.54363 2.04952 2.10242 2.28979 2.83665 2.93415 3.20075 3.47662 3.57446 3.59798 3.75404 3.79889 3.83720 3.90152 4.02584 4.09161 4.19932 4.32019 4.38670 4.43702 4.45932 4.53816 4.55004 4.65275 4.66478 4.75004 4.82533 4.82915 4.85386 4.88091 4.91266 4.95197 5.02749 5.06566 5.12435 5.21417 5.22137 5.27176 5.29797 5.40304 5.41887 5.52778 5.66924 5.90602 6.13324 6.45777 6.53957 6.59836 7.12091 7.23351 7.55843 8.11287 8.70159 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.001580 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.471236 B =17713.758581 C =18998.162951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.061 4.061 3 C -0.145 4.145 4 C -0.120 4.120 5 H 0.091 0.909 6 C -0.130 4.130 7 C -0.194 4.194 8 H 0.144 0.856 9 C 0.539 3.461 10 O -0.588 6.588 11 N -0.697 5.697 12 C 0.115 3.885 13 H 0.085 0.915 14 C -0.141 4.141 15 C -0.099 4.099 16 H 0.092 0.908 17 C 0.070 3.930 18 N -0.684 5.684 19 C 0.065 3.935 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.336 4.336 24 H 0.078 0.922 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.269 1.269 29 H -0.270 1.270 30 H -0.274 1.274 31 C -0.118 4.118 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.091 0.909 40 H 0.131 0.869 41 H 0.415 0.585 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.045 0.955 46 H 0.343 0.657 47 H 0.101 0.899 48 H 0.067 0.933 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.108 0.892 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.997 14.437 -9.932 30.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.202 4.202 4 C -0.139 4.139 5 H 0.109 0.891 6 C -0.167 4.167 7 C -0.215 4.215 8 H 0.162 0.838 9 C 0.328 3.672 10 O -0.468 6.468 11 N -0.347 5.347 12 C 0.009 3.991 13 H 0.103 0.897 14 C -0.180 4.180 15 C -0.118 4.118 16 H 0.110 0.890 17 C -0.058 4.058 18 N -0.316 5.316 19 C -0.067 4.067 20 C 0.224 3.776 21 O -0.511 6.511 22 N -0.211 5.211 23 C -0.466 4.466 24 H 0.096 0.904 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.817 3.183 28 H -0.195 1.195 29 H -0.195 1.195 30 H -0.199 1.199 31 C -0.157 4.157 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.149 0.851 41 H 0.252 0.748 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.162 0.838 47 H 0.119 0.881 48 H 0.085 0.915 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.126 0.874 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 24.494 15.790 -9.401 30.621 hybrid contribution -0.871 -1.499 -0.076 1.735 sum 23.623 14.291 -9.477 29.191 Atomic orbital electron populations 1.21851 0.95275 1.01868 1.01639 1.20746 0.95390 0.96416 0.95427 1.21805 1.01426 0.95087 1.01891 1.22456 1.02140 0.89113 1.00151 0.89083 1.23189 0.89277 1.00198 1.04075 1.22314 1.03028 1.01767 0.94407 0.83848 1.20224 0.74816 0.81681 0.90517 1.90672 1.53863 1.55873 1.46393 1.45552 1.69034 1.11077 1.09064 1.21855 0.96520 0.96522 0.84221 0.89699 1.23400 0.95979 0.96894 1.01704 1.22513 0.95385 0.93903 0.99959 0.88992 1.22067 0.86457 0.97961 0.99350 1.60075 1.15790 1.48450 1.07329 1.21525 0.90502 0.95523 0.99178 1.20943 0.88676 0.82297 0.85682 1.90485 1.79610 1.48961 1.32022 1.41936 1.11660 1.36170 1.31285 1.19678 0.89453 1.22077 1.15377 0.90380 1.26036 1.03703 0.95252 0.96191 1.69669 1.38352 1.24948 1.23088 0.84923 0.76835 0.78534 0.78011 1.19486 1.19519 1.19928 1.23264 0.95471 0.92767 1.04176 0.92705 0.94011 0.91572 0.89286 0.91976 0.91574 0.93563 0.89006 0.85102 0.74824 0.93273 0.89390 0.90571 0.93706 0.83842 0.88110 0.91512 0.76962 0.91278 0.87394 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.03 71.98 0.65 -1.26 16 2 C -0.06 -0.68 3.07 -10.79 -0.03 -0.71 16 3 C -0.14 -1.50 9.18 71.98 0.66 -0.84 16 4 C -0.12 -1.74 4.67 -10.77 -0.05 -1.79 16 5 H 0.09 1.83 7.64 -2.39 -0.02 1.81 16 6 C -0.13 -1.39 9.88 30.62 0.30 -1.09 16 7 C -0.19 -2.73 5.39 -11.54 -0.06 -2.79 16 8 H 0.14 1.42 7.61 -2.39 -0.02 1.41 16 9 C 0.54 11.24 7.61 87.66 0.67 11.91 16 10 O -0.59 -17.56 15.86 -3.02 -0.05 -17.61 16 11 N -0.70 -11.45 5.26 -440.04 -2.32 -13.77 16 12 C 0.11 2.06 4.32 45.52 0.20 2.26 16 13 H 0.08 1.84 7.47 -2.39 -0.02 1.82 16 14 C -0.14 -2.98 7.43 31.12 0.23 -2.75 16 15 C -0.10 -1.75 3.78 -10.27 -0.04 -1.79 16 16 H 0.09 1.61 8.13 -2.39 -0.02 1.59 16 17 C 0.07 1.48 5.52 86.30 0.48 1.96 16 18 N -0.68 -21.01 6.13 -517.92 -3.17 -24.18 16 19 C 0.07 2.22 6.17 85.56 0.53 2.74 16 20 C 0.44 20.93 7.82 87.66 0.69 21.61 16 21 O -0.62 -34.96 15.78 -3.07 -0.05 -35.01 16 22 N -0.57 -29.64 5.29 -306.98 -1.62 -31.26 16 23 C -0.34 -19.28 9.68 84.04 0.81 -18.46 16 24 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 25 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 26 N -0.92 -49.70 13.05 21.66 0.28 -49.42 16 27 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 30 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 31 C -0.12 -1.53 7.39 31.12 0.23 -1.30 16 32 H 0.05 0.71 7.29 -2.39 -0.02 0.69 16 33 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 35 H 0.09 0.70 7.90 -2.39 -0.02 0.68 16 36 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.13 0.73 8.05 -2.39 -0.02 0.71 16 41 H 0.41 4.56 8.70 -92.70 -0.81 3.76 16 42 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.09 1.90 7.90 -2.39 -0.02 1.88 16 44 H 0.08 1.58 7.84 -2.39 -0.02 1.56 16 45 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.34 10.97 8.42 -89.69 -0.76 10.21 16 47 H 0.10 3.14 8.14 -2.38 -0.02 3.12 16 48 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 50 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 51 H 0.11 1.19 8.10 -2.39 -0.02 1.17 16 52 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -74.32 426.65 -0.54 -74.86 By element: Atomic # 1 Polarization: 45.12 SS G_CDS: -1.36 Total: 43.76 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 5.72 Total: 7.52 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -6.83 Total: -118.63 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: -0.10 Total: -52.62 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -74.32 -0.54 -74.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277062350.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.127 kcal (2) G-P(sol) polarization free energy of solvation -74.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds