Wall clock time and date at job start Tue Mar 31 2020 20:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 119.99599 * 2 1 4 4 H 1.09002 * 109.47282 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.46930 * 119.99905 * 3 2 1 6 6 C 1.52999 * 109.47469 * 294.76069 * 5 3 2 7 7 C 1.53000 * 109.47202 * 239.99904 * 3 2 1 8 8 C 1.50697 * 109.47064 * 174.01333 * 7 3 2 9 9 O 1.21278 * 120.00376 * 353.87692 * 8 7 3 10 10 N 1.34774 * 119.99879 * 173.87544 * 8 7 3 11 11 C 1.46501 * 120.00366 * 180.02562 * 10 8 7 12 12 C 1.53005 * 110.27142 * 300.70268 * 11 10 8 13 13 C 1.54596 * 110.30713 * 62.78992 * 11 10 8 14 14 C 1.54930 * 102.92518 * 96.96217 * 13 11 10 15 15 N 1.48537 * 103.22560 * 37.41283 * 14 13 11 16 16 C 1.46895 * 110.99945 * 200.28191 * 15 14 13 17 17 C 1.50699 * 109.47478 * 290.12694 * 16 15 14 18 18 O 1.21294 * 119.99823 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00545 * 180.02562 * 17 16 15 20 20 C 1.37093 * 120.00009 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00203 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00021 * 179.97438 * 20 19 17 23 23 N 1.31421 * 119.99966 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00393 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46876 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47137 * 120.00101 * 24 22 20 27 27 H 1.48494 * 109.47265 * 240.00441 * 24 22 20 28 28 C 1.48123 * 105.86539 * 320.83179 * 15 14 13 29 29 H 1.07999 * 120.00306 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99343 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00564 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46849 * 174.75667 * 5 3 2 33 33 H 1.09005 * 109.47249 * 54.75897 * 5 3 2 34 34 H 1.08991 * 109.47058 * 55.25895 * 6 5 3 35 35 H 1.08998 * 109.46967 * 175.26298 * 6 5 3 36 36 H 1.09006 * 109.46712 * 295.25841 * 6 5 3 37 37 H 1.09002 * 109.47170 * 294.01840 * 7 3 2 38 38 H 1.09002 * 109.46824 * 54.01214 * 7 3 2 39 39 H 0.97004 * 120.00040 * 0.02562 * 10 8 7 40 40 H 1.08999 * 109.46902 * 59.29998 * 12 11 10 41 41 H 1.09003 * 109.46889 * 179.29373 * 12 11 10 42 42 H 1.08991 * 109.46882 * 299.29539 * 12 11 10 43 43 H 1.09001 * 110.72476 * 215.32375 * 13 11 10 44 44 H 1.09006 * 110.72290 * 338.60235 * 13 11 10 45 45 H 1.08999 * 110.67409 * 155.84769 * 14 13 11 46 46 H 1.09005 * 110.66921 * 278.81589 * 14 13 11 47 47 H 1.09002 * 109.47654 * 50.12859 * 16 15 14 48 48 H 1.09005 * 109.47544 * 170.12554 * 16 15 14 49 49 H 0.96997 * 119.99648 * 359.97438 * 19 17 16 50 50 H 0.96999 * 120.00038 * 179.97438 * 23 22 20 51 51 H 1.09003 * 109.94278 * 265.94825 * 28 15 14 52 52 H 1.08997 * 109.99716 * 144.58511 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1337 -0.0005 5 6 2.9430 1.3863 1.2492 6 6 2.0562 1.4368 2.4950 7 6 2.9431 1.3863 -1.2492 8 6 3.5828 2.7486 -1.3255 9 8 3.2728 3.6096 -0.5297 10 7 4.4995 3.0102 -2.2782 11 6 5.1219 4.3344 -2.3521 12 6 4.0547 5.4108 -2.5607 13 6 5.9285 4.6208 -1.0648 14 6 7.3748 4.2413 -1.4704 15 7 7.4634 4.6991 -2.8807 16 6 8.5574 4.0193 -3.5870 17 6 9.8796 4.5080 -3.0543 18 8 9.9079 5.3410 -2.1731 19 7 11.0308 4.0202 -3.5575 20 6 12.2337 4.4652 -3.0732 21 1 12.2588 5.2063 -2.2880 22 6 13.4205 3.9619 -3.5916 23 7 13.3900 3.0597 -4.5467 24 14 15.0595 4.5677 -2.9312 25 1 14.8222 5.5755 -1.8666 26 1 15.8197 3.4231 -2.3680 27 1 15.8394 5.1857 -4.0334 28 6 6.1542 4.3769 -3.4940 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 3.5570 2.2858 1.2035 33 1 3.5875 0.5085 1.2974 34 1 1.3831 0.5796 2.4968 35 1 2.6815 1.4096 3.3874 36 1 1.4724 2.3573 2.4883 37 1 3.7193 0.6228 -1.1973 38 1 2.3308 1.2222 -2.1360 39 1 4.7472 2.3217 -2.9150 40 1 3.3459 5.3849 -1.7330 41 1 4.5302 6.3908 -2.6012 42 1 3.5279 5.2236 -3.4963 43 1 5.8670 5.6757 -0.7977 44 1 5.5808 3.9932 -0.2441 45 1 8.0993 4.7675 -0.8489 46 1 7.5230 3.1635 -1.4031 47 1 8.4779 2.9435 -3.4306 48 1 8.4924 4.2372 -4.6531 49 1 11.0082 3.3543 -4.2625 50 1 14.2185 2.7087 -4.9090 51 1 6.2033 3.4057 -3.9866 52 1 5.8800 5.1479 -4.2140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278421512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:31 Heat of formation + Delta-G solvation = -57.955031 kcal Electronic energy + Delta-G solvation = -29687.992630 eV Core-core repulsion = 25687.547394 eV Total energy + Delta-G solvation = -4000.445237 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.68714 -39.01872 -37.81864 -36.79264 -34.58762 -33.78902 -32.11255 -31.98713 -31.21478 -30.20770 -29.49538 -27.52546 -25.52693 -24.85519 -23.80526 -22.22528 -21.61108 -20.63688 -19.88842 -19.62836 -19.13404 -17.88195 -17.23947 -16.38148 -16.03376 -15.67544 -15.20385 -15.08149 -14.85819 -14.74567 -14.50747 -14.32237 -14.00161 -13.70140 -13.48846 -13.33409 -13.20823 -13.13899 -12.84843 -12.49596 -12.34304 -12.20575 -12.00709 -11.77093 -11.50973 -11.48513 -11.41884 -11.25412 -11.21560 -11.02612 -10.98390 -10.88313 -10.75111 -10.73265 -10.34151 -10.22281 -9.78577 -9.59590 -9.50261 -9.14684 -8.48920 -8.01497 -7.93632 -6.41683 -3.82219 1.93092 2.50562 2.98924 3.16342 3.26913 3.34328 3.90759 4.04705 4.25543 4.33859 4.42968 4.47381 4.70359 4.76169 4.87904 4.90386 4.93882 5.06484 5.12759 5.15471 5.23440 5.24206 5.33406 5.42610 5.46794 5.51289 5.53614 5.65753 5.68077 5.70857 5.71677 5.80516 5.82660 5.89215 5.93674 6.02600 6.09342 6.12718 6.21003 6.23831 6.28305 6.31040 6.45601 6.46950 6.51288 7.13754 7.18294 7.37438 7.55723 8.06818 8.10673 8.62258 9.18797 9.54814 10.06902 10.76248 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.002045 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.578535 B =13691.334526 C =14143.350070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C -0.045 4.045 4 H 0.084 0.916 5 C -0.119 4.119 6 C -0.148 4.148 7 C -0.136 4.136 8 C 0.515 3.485 9 O -0.530 6.530 10 N -0.723 5.723 11 C 0.164 3.836 12 C -0.153 4.153 13 C -0.119 4.119 14 C 0.040 3.960 15 N -0.488 5.488 16 C 0.037 3.963 17 C 0.445 3.555 18 O -0.576 6.576 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.035 3.965 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.397 0.603 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.101 0.899 46 H 0.036 0.964 47 H 0.048 0.952 48 H 0.088 0.912 49 H 0.391 0.609 50 H 0.270 0.730 51 H 0.047 0.953 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.388 -7.669 3.485 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.163 4.163 3 C -0.064 4.064 4 H 0.102 0.898 5 C -0.157 4.157 6 C -0.206 4.206 7 C -0.176 4.176 8 C 0.301 3.699 9 O -0.406 6.406 10 N -0.375 5.375 11 C 0.078 3.922 12 C -0.212 4.212 13 C -0.158 4.158 14 C -0.087 4.087 15 N -0.212 5.212 16 C -0.095 4.095 17 C 0.231 3.769 18 O -0.459 6.459 19 N -0.203 5.203 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.094 4.094 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.232 0.768 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.119 0.881 46 H 0.054 0.946 47 H 0.066 0.934 48 H 0.107 0.893 49 H 0.224 0.776 50 H 0.080 0.920 51 H 0.065 0.935 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.299 -6.000 4.524 25.435 hybrid contribution 0.937 -1.641 -0.730 2.026 sum -23.362 -7.642 3.794 24.872 Atomic orbital electron populations 1.23864 0.95954 1.01792 1.01338 1.22940 0.95927 0.98051 0.99387 1.20157 0.96937 0.95730 0.93593 0.89779 1.21602 0.97980 1.02620 0.93482 1.21731 0.99779 1.01632 0.97427 1.21728 1.00369 0.95125 1.00404 1.20597 0.78930 0.89987 0.80357 1.90668 1.61987 1.47797 1.40176 1.46348 1.42743 1.14575 1.33883 1.21165 0.92558 0.82441 0.96006 1.22151 0.98876 0.97836 1.02305 1.22848 0.93808 1.02856 0.96289 1.23317 0.97189 0.97918 0.90301 1.64597 1.00389 1.54092 1.02111 1.22075 0.92039 0.96154 0.99241 1.19682 0.84596 0.86152 0.86514 1.90512 1.86942 1.35279 1.33182 1.41860 1.04665 1.38420 1.35366 1.19746 0.81992 1.21983 1.18892 0.87864 1.25260 0.99809 0.96528 0.96457 1.69622 1.28733 1.29229 1.26880 0.85804 0.81246 0.78581 0.78748 1.19214 1.20812 1.20757 1.23263 0.89591 1.00453 0.96106 0.88592 0.88578 0.87428 0.90250 0.92523 0.92914 0.92995 0.92783 0.89003 0.88823 0.76833 0.90395 0.91184 0.92965 0.89913 0.90516 0.88104 0.94612 0.93392 0.89330 0.77566 0.91975 0.93502 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 14.32 29.01 0.42 -0.80 16 2 C -0.14 -0.97 7.69 -36.02 -0.28 -1.24 16 3 C -0.05 -0.36 1.79 -91.77 -0.16 -0.52 16 4 H 0.08 0.79 7.47 -51.93 -0.39 0.40 16 5 C -0.12 -1.06 5.19 -26.73 -0.14 -1.20 16 6 C -0.15 -1.24 9.80 37.16 0.36 -0.88 16 7 C -0.14 -0.96 5.15 -27.88 -0.14 -1.11 16 8 C 0.51 5.11 6.57 -10.99 -0.07 5.03 16 9 O -0.53 -6.87 11.18 5.56 0.06 -6.81 16 10 N -0.72 -6.70 5.15 -46.35 -0.24 -6.94 16 11 C 0.16 1.88 0.94 -130.46 -0.12 1.76 16 12 C -0.15 -1.71 8.14 37.16 0.30 -1.40 16 13 C -0.12 -1.64 5.83 -24.87 -0.14 -1.79 16 14 C 0.04 0.65 5.86 -1.90 -0.01 0.64 16 15 N -0.49 -8.00 4.96 -231.70 -1.15 -9.14 16 16 C 0.04 0.64 5.19 -4.98 -0.03 0.62 16 17 C 0.45 10.47 7.58 -10.99 -0.08 10.39 16 18 O -0.58 -15.55 14.42 5.55 0.08 -15.47 16 19 N -0.57 -14.28 5.29 -10.97 -0.06 -14.34 16 20 C -0.30 -8.26 9.68 -14.94 -0.14 -8.40 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.56 5.50 -17.46 -0.10 0.46 16 23 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 24 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 C 0.03 0.42 6.16 -2.63 -0.02 0.40 16 29 H 0.10 0.61 7.83 -52.49 -0.41 0.20 16 30 H 0.10 0.50 8.06 -52.48 -0.42 0.08 16 31 H 0.11 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.08 0.88 6.19 -51.93 -0.32 0.56 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.40 7.24 -51.93 -0.38 0.03 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.40 2.78 8.09 -40.82 -0.33 2.45 16 40 H 0.08 0.98 6.17 -51.93 -0.32 0.65 16 41 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 1.19 7.86 -51.93 -0.41 0.79 16 44 H 0.08 1.08 6.69 -51.93 -0.35 0.73 16 45 H 0.10 1.96 6.92 -51.93 -0.36 1.61 16 46 H 0.04 0.56 7.86 -51.93 -0.41 0.15 16 47 H 0.05 0.76 7.90 -51.93 -0.41 0.35 16 48 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 49 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 50 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 51 H 0.05 0.48 7.10 -51.93 -0.37 0.11 16 52 H 0.09 1.04 7.68 -51.93 -0.40 0.64 16 LS Contribution 409.89 15.07 6.18 6.18 Total: -1.00 -32.04 409.89 -8.69 -40.73 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -8.91 Total: 11.56 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -0.36 Total: 1.96 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.72 Total: -54.20 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.14 Total: -22.28 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.04 -8.69 -40.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278421512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.224 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds