Wall clock time and date at job start Tue Mar 31 2020 20:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 119.99599 * 2 1 4 4 H 1.09002 * 109.47282 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.46930 * 119.99905 * 3 2 1 6 6 C 1.52999 * 109.47469 * 294.76069 * 5 3 2 7 7 C 1.53000 * 109.47202 * 239.99904 * 3 2 1 8 8 C 1.50697 * 109.47064 * 174.01333 * 7 3 2 9 9 O 1.21278 * 120.00376 * 353.87692 * 8 7 3 10 10 N 1.34774 * 119.99879 * 173.87544 * 8 7 3 11 11 C 1.46501 * 120.00366 * 180.02562 * 10 8 7 12 12 C 1.53005 * 110.27142 * 300.70268 * 11 10 8 13 13 C 1.54596 * 110.30713 * 62.78992 * 11 10 8 14 14 C 1.54930 * 102.92518 * 96.96217 * 13 11 10 15 15 N 1.48537 * 103.22560 * 37.41283 * 14 13 11 16 16 C 1.46895 * 110.99945 * 200.28191 * 15 14 13 17 17 C 1.50699 * 109.47478 * 290.12694 * 16 15 14 18 18 O 1.21294 * 119.99823 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00545 * 180.02562 * 17 16 15 20 20 C 1.37093 * 120.00009 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00203 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00021 * 179.97438 * 20 19 17 23 23 N 1.31421 * 119.99966 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00393 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46876 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47137 * 120.00101 * 24 22 20 27 27 H 1.48494 * 109.47265 * 240.00441 * 24 22 20 28 28 C 1.48123 * 105.86539 * 320.83179 * 15 14 13 29 29 H 1.07999 * 120.00306 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99343 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00564 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46849 * 174.75667 * 5 3 2 33 33 H 1.09005 * 109.47249 * 54.75897 * 5 3 2 34 34 H 1.08991 * 109.47058 * 55.25895 * 6 5 3 35 35 H 1.08998 * 109.46967 * 175.26298 * 6 5 3 36 36 H 1.09006 * 109.46712 * 295.25841 * 6 5 3 37 37 H 1.09002 * 109.47170 * 294.01840 * 7 3 2 38 38 H 1.09002 * 109.46824 * 54.01214 * 7 3 2 39 39 H 0.97004 * 120.00040 * 0.02562 * 10 8 7 40 40 H 1.08999 * 109.46902 * 59.29998 * 12 11 10 41 41 H 1.09003 * 109.46889 * 179.29373 * 12 11 10 42 42 H 1.08991 * 109.46882 * 299.29539 * 12 11 10 43 43 H 1.09001 * 110.72476 * 215.32375 * 13 11 10 44 44 H 1.09006 * 110.72290 * 338.60235 * 13 11 10 45 45 H 1.08999 * 110.67409 * 155.84769 * 14 13 11 46 46 H 1.09005 * 110.66921 * 278.81589 * 14 13 11 47 47 H 1.09002 * 109.47654 * 50.12859 * 16 15 14 48 48 H 1.09005 * 109.47544 * 170.12554 * 16 15 14 49 49 H 0.96997 * 119.99648 * 359.97438 * 19 17 16 50 50 H 0.96999 * 120.00038 * 179.97438 * 23 22 20 51 51 H 1.09003 * 109.94278 * 265.94825 * 28 15 14 52 52 H 1.08997 * 109.99716 * 144.58511 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1337 -0.0005 5 6 2.9430 1.3863 1.2492 6 6 2.0562 1.4368 2.4950 7 6 2.9431 1.3863 -1.2492 8 6 3.5828 2.7486 -1.3255 9 8 3.2728 3.6096 -0.5297 10 7 4.4995 3.0102 -2.2782 11 6 5.1219 4.3344 -2.3521 12 6 4.0547 5.4108 -2.5607 13 6 5.9285 4.6208 -1.0648 14 6 7.3748 4.2413 -1.4704 15 7 7.4634 4.6991 -2.8807 16 6 8.5574 4.0193 -3.5870 17 6 9.8796 4.5080 -3.0543 18 8 9.9079 5.3410 -2.1731 19 7 11.0308 4.0202 -3.5575 20 6 12.2337 4.4652 -3.0732 21 1 12.2588 5.2063 -2.2880 22 6 13.4205 3.9619 -3.5916 23 7 13.3900 3.0597 -4.5467 24 14 15.0595 4.5677 -2.9312 25 1 14.8222 5.5755 -1.8666 26 1 15.8197 3.4231 -2.3680 27 1 15.8394 5.1857 -4.0334 28 6 6.1542 4.3769 -3.4940 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 3.5570 2.2858 1.2035 33 1 3.5875 0.5085 1.2974 34 1 1.3831 0.5796 2.4968 35 1 2.6815 1.4096 3.3874 36 1 1.4724 2.3573 2.4883 37 1 3.7193 0.6228 -1.1973 38 1 2.3308 1.2222 -2.1360 39 1 4.7472 2.3217 -2.9150 40 1 3.3459 5.3849 -1.7330 41 1 4.5302 6.3908 -2.6012 42 1 3.5279 5.2236 -3.4963 43 1 5.8670 5.6757 -0.7977 44 1 5.5808 3.9932 -0.2441 45 1 8.0993 4.7675 -0.8489 46 1 7.5230 3.1635 -1.4031 47 1 8.4779 2.9435 -3.4306 48 1 8.4924 4.2372 -4.6531 49 1 11.0082 3.3543 -4.2625 50 1 14.2185 2.7087 -4.9090 51 1 6.2033 3.4057 -3.9866 52 1 5.8800 5.1479 -4.2140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278421512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:30 Heat of formation + Delta-G solvation = -80.479383 kcal Electronic energy + Delta-G solvation = -29688.969359 eV Core-core repulsion = 25687.547394 eV Total energy + Delta-G solvation = -4001.421966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.60651 -40.35006 -39.25650 -37.56934 -36.04598 -35.39306 -33.32751 -32.89708 -32.64077 -31.12885 -30.43963 -28.88827 -26.92044 -25.87145 -25.13013 -23.01793 -22.66350 -21.52048 -21.05674 -20.49337 -20.36925 -19.86464 -18.14484 -17.74534 -17.25156 -16.68745 -16.41839 -16.16414 -16.01907 -15.88677 -15.72621 -15.52793 -15.30264 -14.78491 -14.71495 -14.31366 -14.25482 -14.11950 -13.83939 -13.63078 -13.49322 -13.34546 -13.15101 -12.96143 -12.91120 -12.73962 -12.42466 -12.37382 -12.36412 -12.12276 -12.10915 -12.00946 -11.97071 -11.84216 -11.61123 -11.48626 -11.45329 -10.54421 -10.30554 -10.17160 -10.01720 -9.98471 -9.33213 -8.46428 -5.94468 1.36100 1.41392 1.43957 1.55293 1.75136 2.06833 2.19441 2.30256 2.85614 3.20300 3.31531 3.49794 3.71754 3.76647 3.83716 3.94423 4.12401 4.20025 4.25423 4.29974 4.32535 4.42009 4.43378 4.45519 4.51790 4.58877 4.59500 4.65195 4.75698 4.82162 4.84961 4.89866 4.96039 4.99544 5.05542 5.09656 5.11479 5.12762 5.21410 5.32829 5.41359 5.41836 5.45466 5.59443 5.80249 5.83352 5.95194 5.97075 6.09662 6.61879 6.65659 7.14371 7.37672 7.57825 8.14516 8.71196 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.002045 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.578535 B =13691.334526 C =14143.350070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.148 4.148 3 C -0.042 4.042 4 H 0.064 0.936 5 C -0.119 4.119 6 C -0.146 4.146 7 C -0.129 4.129 8 C 0.511 3.489 9 O -0.564 6.564 10 N -0.714 5.714 11 C 0.173 3.827 12 C -0.147 4.147 13 C -0.111 4.111 14 C 0.046 3.954 15 N -0.512 5.512 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.330 4.330 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.276 1.276 26 H -0.271 1.271 27 H -0.270 1.270 28 C 0.039 3.961 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.043 0.957 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.412 0.588 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.042 0.958 47 H 0.073 0.927 48 H 0.115 0.885 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.076 0.924 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.405 -9.690 1.868 27.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.165 4.165 3 C -0.061 4.061 4 H 0.083 0.917 5 C -0.156 4.156 6 C -0.204 4.204 7 C -0.168 4.168 8 C 0.299 3.701 9 O -0.443 6.443 10 N -0.368 5.368 11 C 0.086 3.914 12 C -0.205 4.205 13 C -0.150 4.150 14 C -0.082 4.082 15 N -0.236 5.236 16 C -0.081 4.081 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.213 5.213 20 C -0.460 4.460 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.089 4.089 29 H 0.109 0.891 30 H 0.128 0.872 31 H 0.139 0.861 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.250 0.750 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.091 0.909 48 H 0.133 0.867 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.095 0.905 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -25.333 -8.061 2.866 26.739 hybrid contribution 1.196 -0.981 -0.179 1.557 sum -24.138 -9.042 2.687 25.915 Atomic orbital electron populations 1.23991 0.95998 1.02249 1.00631 1.22913 0.95971 0.97680 0.99986 1.20073 0.96597 0.95921 0.93509 0.91713 1.21564 0.98056 1.01630 0.94353 1.21710 0.99769 1.01523 0.97357 1.21741 1.00809 0.93502 1.00795 1.21144 0.78563 0.90736 0.79648 1.90669 1.63066 1.49134 1.41454 1.46212 1.42298 1.14063 1.34184 1.20947 0.92416 0.83813 0.94231 1.22074 0.98393 0.97467 1.02603 1.22717 0.92883 1.01826 0.97589 1.23116 0.97379 0.97518 0.90211 1.64493 1.02123 1.54877 1.02131 1.21948 0.88777 0.97268 1.00146 1.20813 0.86233 0.84858 0.85317 1.90493 1.87905 1.37005 1.34902 1.41915 1.04668 1.38887 1.35786 1.19659 0.83895 1.22865 1.19595 0.90568 1.26001 1.02482 0.96367 0.96437 1.69672 1.29917 1.29391 1.27115 0.84900 0.77278 0.78172 0.78163 1.20028 1.19589 1.19562 1.23311 0.87002 1.02493 0.96081 0.89095 0.87237 0.86109 0.92891 0.91648 0.91928 0.93009 0.93783 0.87100 0.86660 0.75030 0.91986 0.91732 0.91031 0.91341 0.91060 0.92436 0.94018 0.90887 0.86735 0.76966 0.91335 0.90543 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 14.32 67.78 0.97 -1.07 16 2 C -0.15 -1.64 7.69 25.65 0.20 -1.44 16 3 C -0.04 -0.61 1.79 -11.54 -0.02 -0.63 16 4 H 0.06 1.20 7.47 -2.39 -0.02 1.18 16 5 C -0.12 -2.05 5.19 30.59 0.16 -1.89 16 6 C -0.15 -2.42 9.80 71.98 0.71 -1.71 16 7 C -0.13 -1.51 5.15 29.85 0.15 -1.35 16 8 C 0.51 9.38 6.57 87.66 0.58 9.95 16 9 O -0.56 -14.66 11.18 -3.02 -0.03 -14.69 16 10 N -0.71 -11.49 5.15 -418.96 -2.16 -13.65 16 11 C 0.17 3.67 0.94 4.48 0.00 3.68 16 12 C -0.15 -3.08 8.14 71.98 0.59 -2.49 16 13 C -0.11 -3.10 5.83 31.80 0.19 -2.92 16 14 C 0.05 1.50 5.86 86.65 0.51 2.01 16 15 N -0.51 -16.21 4.96 -886.97 -4.40 -20.60 16 16 C 0.05 1.66 5.19 85.56 0.44 2.11 16 17 C 0.44 20.95 7.58 87.66 0.66 21.62 16 18 O -0.62 -34.63 14.42 -3.07 -0.04 -34.67 16 19 N -0.57 -29.36 5.29 -306.99 -1.62 -30.98 16 20 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 23 N -0.92 -49.32 13.05 21.66 0.28 -49.03 16 24 Si 0.99 43.17 29.55 68.60 2.03 45.19 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 C 0.04 0.83 6.16 86.40 0.53 1.36 16 29 H 0.09 1.05 7.83 -2.91 -0.02 1.03 16 30 H 0.11 0.87 8.06 -2.91 -0.02 0.85 16 31 H 0.12 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.05 1.21 6.19 -2.38 -0.01 1.19 16 33 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.06 0.90 7.24 -2.39 -0.02 0.88 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.41 4.20 8.09 -92.70 -0.75 3.45 16 40 H 0.06 1.53 6.17 -2.39 -0.01 1.52 16 41 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 42 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 2.08 7.86 -2.39 -0.02 2.06 16 44 H 0.07 2.06 6.69 -2.38 -0.02 2.04 16 45 H 0.06 2.38 6.92 -2.39 -0.02 2.37 16 46 H 0.04 1.30 7.86 -2.38 -0.02 1.28 16 47 H 0.07 2.10 7.90 -2.39 -0.02 2.08 16 48 H 0.11 3.26 8.11 -2.38 -0.02 3.24 16 49 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 50 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 51 H 0.08 1.22 7.10 -2.39 -0.02 1.20 16 52 H 0.10 2.00 7.68 -2.39 -0.02 1.99 16 Total: -1.00 -72.19 409.89 0.44 -71.76 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: -0.57 Total: 37.74 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 6.95 Total: 8.93 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -7.89 Total: -114.26 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -0.08 Total: -49.36 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -72.19 0.44 -71.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278421512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.723 kcal (2) G-P(sol) polarization free energy of solvation -72.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds